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The map label for this gene is rpmE2

Identifier: 78484470

GI number: 78484470

Start: 158047

End: 158298

Strand: Reverse

Name: rpmE2

Synonym: Tcr_0125

Alternate gene names: 78484470

Gene position: 158298-158047 (Counterclockwise)

Preceding gene: 78484471

Following gene: 78484469

Centisome position: 6.52

GC content: 39.29

Gene sequence:

>252_bases
ATGCAAGCAGGCATTCATCCAGAATATAATGAAGTTGTTTTCCAGGATATCTCTACTGGTGAAACCTTTTTAACTCGTTC
AACGATTGAAAAGACTTCTGGCGACACCATTACTTTAGACGGTAAAGAATACCCACTAGTTCGTATCGAAGTTTCTAGTG
CATCACATCCTTTCTTCACAGGTAAGCAATCACTTGTTGATACGGAAGGTCGTGTTGAAAAATTCCGTCAAAAATACGGT
ATGCGCAAGTAA

Upstream 100 bases:

>100_bases
CTGATTGCGAGTGATTCACTTAAGTTGGTTTCCAACCTAATCACTCAGCAAAAATGATAAAGGGTAAATTGAAAGCTACA
TAATACAATGGACCGTCATC

Downstream 100 bases:

>100_bases
GTACTTCACTTTACTATTTTGTAAAATTTACAAAATATTCAAAAAAGGCCGTCTTTTCGGCCTTTTTTATTTTCTGAATT
CCCAAACGTTTTTTCCCTCT

Product: ribosomal protein L31

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 83

Protein sequence:

>83_residues
MQAGIHPEYNEVVFQDISTGETFLTRSTIEKTSGDTITLDGKEYPLVRIEVSSASHPFFTGKQSLVDTEGRVEKFRQKYG
MRK

Sequences:

>Translated_83_residues
MQAGIHPEYNEVVFQDISTGETFLTRSTIEKTSGDTITLDGKEYPLVRIEVSSASHPFFTGKQSLVDTEGRVEKFRQKYG
MRK
>Mature_83_residues
MQAGIHPEYNEVVFQDISTGETFLTRSTIEKTSGDTITLDGKEYPLVRIEVSSASHPFFTGKQSLVDTEGRVEKFRQKYG
MRK

Specific function: Binds the 23S rRNA

COG id: COG0254

COG function: function code J; Ribosomal protein L31

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L31P family. Type B subfamily

Homologues:

Organism=Escherichia coli, GI2367109, Length=80, Percent_Identity=51.25, Blast_Score=77, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL31B_THICR (Q31JF2)

Other databases:

- EMBL:   CP000109
- RefSeq:   YP_390395.1
- ProteinModelPortal:   Q31JF2
- SMR:   Q31JF2
- STRING:   Q31JF2
- GeneID:   3762494
- GenomeReviews:   CP000109_GR
- KEGG:   tcx:Tcr_0125
- NMPDR:   fig|317025.3.peg.141
- eggNOG:   COG0254
- HOGENOM:   HBG610087
- OMA:   QFLTRST
- PhylomeDB:   Q31JF2
- BioCyc:   TCRU317025:TCR_0125-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00502
- InterPro:   IPR002150
- PRINTS:   PR01249
- TIGRFAMs:   TIGR00105

Pfam domain/function: PF01197 Ribosomal_L31

EC number: NA

Molecular weight: Translated: 9416; Mature: 9416

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01143 RIBOSOMAL_L31

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAGIHPEYNEVVFQDISTGETFLTRSTIEKTSGDTITLDGKEYPLVRIEVSSASHPFFT
CCCCCCCCCCCEEEECCCCCCEEEEHHHHHCCCCCEEEECCCCCCEEEEEECCCCCCEEC
GKQSLVDTEGRVEKFRQKYGMRK
CCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure
MQAGIHPEYNEVVFQDISTGETFLTRSTIEKTSGDTITLDGKEYPLVRIEVSSASHPFFT
CCCCCCCCCCCEEEECCCCCCEEEEHHHHHCCCCCEEEECCCCCCEEEEEECCCCCCEEC
GKQSLVDTEGRVEKFRQKYGMRK
CCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA