Click here to switch to the map view.

The map label for this gene is rubB [H]

Identifier: 78484383

GI number: 78484383

Start: 46099

End: 47466

Strand: Reverse

Name: rubB [H]

Synonym: Tcr_0037

Alternate gene names: 78484383

Gene position: 47466-46099 (Counterclockwise)

Preceding gene: 78484384

Following gene: 78484382

Centisome position: 1.96

GC content: 47.22

Gene sequence:

>1368_bases
ATGAGTGAAGATTTTAAAAAATATATTTGTAAAACTTGTGGACTGATTTATGACGAGGAGTTAGGTGATCCAGACTCGGG
TCTGGCTCCTGGAACGCGTTTTGAAGACATTCCAGAGGATTGGTACTGCCCATTATGTCTGGTAAGTAAATCAGATTTTA
TTCCGCTTGATCAGGCCAAAGTAAAATCTTCACCCGATGGATCACCTAAGCGTAAAGCCAGCACGCACGCTGATGTATTA
ATTATTGGTGCGGGTTATGCCGGTTGGCAAGCAGCGGAAAACATTCGGGCGGCTTTGCCAGAGGCCGAAATCAGTTTGCT
CACCGCTTGTGACGGCACAGTGTATCCGAAACCGTCACTGTCCATGGCCTTAAGCCAAGGGCGCACGCCGGATGACTTAA
AAGAAATGACCGCCGAAGCCAAAGCCGCCGAACTGAATATGGGTGTTAAAACCCGGACCAAAGTCATGTCCATCAACACC
AAGCGTAAAAAGGTCATGACCACTTCGGGCAGCTTCCAATACGATAAATTGATTCTGGCAACCGGTGCAAAAGCGATGGT
TCCTCAAGTCGAAGGAAATGCCGCACACGACATCATGACCATTAATGATCTATCGGCTTATCGACGTTTTTATAAAGCAC
TGGTGGGTAAACAATCTGTAACGTTGATTGGTGGTGGTTTGATTGCCACCGAGCTGGCCGAAGACCTAAGTTCACAAGAC
ATTGAAGTCAATATGGTGGTACGCGGCGCGCATTTGATGAGTCAGATTTTACCGGAAGCAATTTCCAACTCGTTGGAGAC
AAAACTGAAAGAAAATGGCGTTCATCTGTACAAAAACTCTGAACTGAAAGAGATCAATGAATCGGAAAATGGTTATGTAT
TACAAACCGATCAAGGTGAATTTCTGGAAACAAATATTGTGATTGCCGCGATTGGTTTGGCTCCGAATTTAGATTTGGCA
AAAAAAGCCAAGCTGGAAACCAACCGGGGTATTTGCATCAATGGGGCTTGCCAAACTTCTGACCCGGATATTTTTGCGAT
TGGCGACTGCGCCGAAGCGGGTGGCGTGTTGCAAGCCTATCTAGAACCGATTCGTCGTCAGGCCAAAGCCATTGCCGCGC
ACTTGAAGGGTGAAGACACTGATCAATTCCAAGTGCTTCCAAGTTTGATCAAAACCAAAACACCAAGCTTATCCATTATG
ATTAGCCCGCCATTGCACGCCACGCACGGTCAATGGGAGCAAACCATAATGGTCGGCGACAACCAACGTTTGCTATATAA
AGAGGGTGAAGGCGTCTCCGGTTTTGCCCTCAGCGGCGACTTGGTCACCAGCGCCAACGCCCTTTACCAAGAGCTGTTCA
GCGCGTAA

Upstream 100 bases:

>100_bases
ACGAAAGTTACGTGAGGCTTATTTTGTCATTATCGTGACCCCTTCTATCAAGCATCTTAGAAAGGAAATAGCCCGTATCG
AAGCGGCTTAGGAGTGCAAT

Downstream 100 bases:

>100_bases
TTCAGCATTTAATCCGCACCCAAAACAACGACCAAAAAGCGTTAAACGTCATAAGAAGTCACTTCGGTGGCCTTTTTATG
CTTGATTAAAATGAATGTAA

Product: rubredoxin-type Fe(Cys)4 protein

Products: NA

Alternate protein names: RdxR [H]

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSEDFKKYICKTCGLIYDEELGDPDSGLAPGTRFEDIPEDWYCPLCLVSKSDFIPLDQAKVKSSPDGSPKRKASTHADVL
IIGAGYAGWQAAENIRAALPEAEISLLTACDGTVYPKPSLSMALSQGRTPDDLKEMTAEAKAAELNMGVKTRTKVMSINT
KRKKVMTTSGSFQYDKLILATGAKAMVPQVEGNAAHDIMTINDLSAYRRFYKALVGKQSVTLIGGGLIATELAEDLSSQD
IEVNMVVRGAHLMSQILPEAISNSLETKLKENGVHLYKNSELKEINESENGYVLQTDQGEFLETNIVIAAIGLAPNLDLA
KKAKLETNRGICINGACQTSDPDIFAIGDCAEAGGVLQAYLEPIRRQAKAIAAHLKGEDTDQFQVLPSLIKTKTPSLSIM
ISPPLHATHGQWEQTIMVGDNQRLLYKEGEGVSGFALSGDLVTSANALYQELFSA

Sequences:

>Translated_455_residues
MSEDFKKYICKTCGLIYDEELGDPDSGLAPGTRFEDIPEDWYCPLCLVSKSDFIPLDQAKVKSSPDGSPKRKASTHADVL
IIGAGYAGWQAAENIRAALPEAEISLLTACDGTVYPKPSLSMALSQGRTPDDLKEMTAEAKAAELNMGVKTRTKVMSINT
KRKKVMTTSGSFQYDKLILATGAKAMVPQVEGNAAHDIMTINDLSAYRRFYKALVGKQSVTLIGGGLIATELAEDLSSQD
IEVNMVVRGAHLMSQILPEAISNSLETKLKENGVHLYKNSELKEINESENGYVLQTDQGEFLETNIVIAAIGLAPNLDLA
KKAKLETNRGICINGACQTSDPDIFAIGDCAEAGGVLQAYLEPIRRQAKAIAAHLKGEDTDQFQVLPSLIKTKTPSLSIM
ISPPLHATHGQWEQTIMVGDNQRLLYKEGEGVSGFALSGDLVTSANALYQELFSA
>Mature_454_residues
SEDFKKYICKTCGLIYDEELGDPDSGLAPGTRFEDIPEDWYCPLCLVSKSDFIPLDQAKVKSSPDGSPKRKASTHADVLI
IGAGYAGWQAAENIRAALPEAEISLLTACDGTVYPKPSLSMALSQGRTPDDLKEMTAEAKAAELNMGVKTRTKVMSINTK
RKKVMTTSGSFQYDKLILATGAKAMVPQVEGNAAHDIMTINDLSAYRRFYKALVGKQSVTLIGGGLIATELAEDLSSQDI
EVNMVVRGAHLMSQILPEAISNSLETKLKENGVHLYKNSELKEINESENGYVLQTDQGEFLETNIVIAAIGLAPNLDLAK
KAKLETNRGICINGACQTSDPDIFAIGDCAEAGGVLQAYLEPIRRQAKAIAAHLKGEDTDQFQVLPSLIKTKTPSLSIMI
SPPLHATHGQWEQTIMVGDNQRLLYKEGEGVSGFALSGDLVTSANALYQELFSA

Specific function: Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase [H]

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FAD-dependent oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI226437568, Length=288, Percent_Identity=26.3888888888889, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI65787454, Length=288, Percent_Identity=26.3888888888889, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI21389617, Length=288, Percent_Identity=26.3888888888889, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI22202629, Length=318, Percent_Identity=27.3584905660377, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4757732, Length=318, Percent_Identity=26.7295597484277, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI1789065, Length=335, Percent_Identity=35.2238805970149, Blast_Score=209, Evalue=3e-55,
Organism=Escherichia coli, GI1788892, Length=274, Percent_Identity=27.7372262773723, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789765, Length=310, Percent_Identity=26.4516129032258, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787352, Length=210, Percent_Identity=27.6190476190476, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI32564386, Length=371, Percent_Identity=25.3369272237197, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17559934, Length=290, Percent_Identity=23.448275862069, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581020, Length=349, Percent_Identity=22.3495702005731, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI28573993, Length=349, Percent_Identity=22.3495702005731, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24585130, Length=303, Percent_Identity=22.4422442244224, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24639257, Length=297, Percent_Identity=24.5791245791246, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI281359715, Length=297, Percent_Identity=24.5791245791246, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI281359713, Length=297, Percent_Identity=24.5791245791246, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24639250, Length=297, Percent_Identity=24.5791245791246, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI18543267, Length=297, Percent_Identity=24.5791245791246, Blast_Score=65, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24639252, Length=297, Percent_Identity=24.5791245791246, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.18.1.1 [H]

Molecular weight: Translated: 49166; Mature: 49034

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50903 RUBREDOXIN_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEDFKKYICKTCGLIYDEELGDPDSGLAPGTRFEDIPEDWYCPLCLVSKSDFIPLDQAK
CCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
VKSSPDGSPKRKASTHADVLIIGAGYAGWQAAENIRAALPEAEISLLTACDGTVYPKPSL
CCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH
SMALSQGRTPDDLKEMTAEAKAAELNMGVKTRTKVMSINTKRKKVMTTSGSFQYDKLILA
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHEEEECCCCCCCCEEEEE
TGAKAMVPQVEGNAAHDIMTINDLSAYRRFYKALVGKQSVTLIGGGLIATELAEDLSSQD
CCCHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCC
IEVNMVVRGAHLMSQILPEAISNSLETKLKENGVHLYKNSELKEINESENGYVLQTDQGE
EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCEEEECCCCC
FLETNIVIAAIGLAPNLDLAKKAKLETNRGICINGACQTSDPDIFAIGDCAEAGGVLQAY
EEECCEEEEEECCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCEEEECCCHHHCHHHHHH
LEPIRRQAKAIAAHLKGEDTDQFQVLPSLIKTKTPSLSIMISPPLHATHGQWEQTIMVGD
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEECC
NQRLLYKEGEGVSGFALSGDLVTSANALYQELFSA
CCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SEDFKKYICKTCGLIYDEELGDPDSGLAPGTRFEDIPEDWYCPLCLVSKSDFIPLDQAK
CHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
VKSSPDGSPKRKASTHADVLIIGAGYAGWQAAENIRAALPEAEISLLTACDGTVYPKPSL
CCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH
SMALSQGRTPDDLKEMTAEAKAAELNMGVKTRTKVMSINTKRKKVMTTSGSFQYDKLILA
HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHEEEECCCCCCCCEEEEE
TGAKAMVPQVEGNAAHDIMTINDLSAYRRFYKALVGKQSVTLIGGGLIATELAEDLSSQD
CCCHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCC
IEVNMVVRGAHLMSQILPEAISNSLETKLKENGVHLYKNSELKEINESENGYVLQTDQGE
EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHCCCCCCCEEEECCCCC
FLETNIVIAAIGLAPNLDLAKKAKLETNRGICINGACQTSDPDIFAIGDCAEAGGVLQAY
EEECCEEEEEECCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCEEEECCCHHHCHHHHHH
LEPIRRQAKAIAAHLKGEDTDQFQVLPSLIKTKTPSLSIMISPPLHATHGQWEQTIMVGD
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEEEEECC
NQRLLYKEGEGVSGFALSGDLVTSANALYQELFSA
CCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA