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The map label for this gene is bcd [H]

Identifier: 78484384

GI number: 78484384

Start: 47476

End: 48558

Strand: Reverse

Name: bcd [H]

Synonym: Tcr_0038

Alternate gene names: 78484384

Gene position: 48558-47476 (Counterclockwise)

Preceding gene: 78484385

Following gene: 78484383

Centisome position: 2.0

GC content: 39.61

Gene sequence:

>1083_bases
ATGATAAGTCAAATTGTTCAAAAGGATCTTAAGCCGTTAACGTTGGCGATTGATCATGGACAGTACACAACAGAAATTTT
ATCGAAAATTGGTCAAGCTGGAGGATTCCGTCACCACATTCCTTCTTTAAATAATGGTGAACTGAATTTGTTTGGAACCA
TTCAAGACATGGCAACCGTTTCTGAAGAGTGTATGTCAACAGGTTTTATGATGTGGGCACAAACCGTTTGTGCTTGGTAT
ATCGAAAACTCTGAAAATGAATGGTTGAAGTCTGAAATTTTACCAAAAATAGTAGATGGTGAATATTTTGGGGCCACAGC
TTTATCGAATCCAATGAAGTATTTTGCTGGCATTGAAGACTTGAAGCTGTCTGCCGAGGAAACGGAAGATGGTTATATTA
TTAATGGAACCTTGCCTTGGGTATCGAACTTATTAGAAGGATCGGATAAACATTTCTTTGGCTCGATTTTCAATGTACAT
GATCATGATAAAAAAAATAAAAAAGATGTGATGGCGATCATTCCATGTAACTTGGAAGGATTGACCATGAAACAAATGGC
GGAATTTGTCGGAATGGAGGGGACTGGGACTTATTCTTTGATGTTTGATAATGCGTTTTTACCTAAGAAATATTTGTTGG
CCGACTCATTAAAACCGTATTTAAATAAAATTAAATCGGGCTTTATTTTATTGCAAACGGGCATGGCTGGAGGCGTCATT
AAAGGCGCCATCAATGAAATGGAAAGAGCCAATTTAACGCTTTCAGAAATTAATGAATATTTGGACGACTCCCCGGAAGA
ATTGGCTGAGGATTTAGAGGATGCGATAGATTTGATTGAATCTCTCTGTGAAGAGCCGTTTACACCAGGAGAAGAATATT
TCAAATCCGTATTGGAAGCCAGATTGGTAGGCGCTGAAATATGTAGGCGTGCTGCAGACTCCGTGATGCAGCATGCCGGA
GCAAAAGGATATCTAGTCGATGCCGGACCACAACGAAAGTTACGTGAGGCTTATTTTGTCATTATCGTGACCCCTTCTAT
CAAGCATCTTAGAAAGGAAATAGCCCGTATCGAAGCGGCTTAG

Upstream 100 bases:

>100_bases
TATATGAATGCAGTGGATTTGTCTGGCAAATTAGTCAGCTAAGTCTTGTCCAGGCCTGGTAAATTTTGTCAGGCCAATCC
CACTTTGAAGGAGAATGACT

Downstream 100 bases:

>100_bases
GAGTGCAATATGAGTGAAGATTTTAAAAAATATATTTGTAAAACTTGTGGACTGATTTATGACGAGGAGTTAGGTGATCC
AGACTCGGGTCTGGCTCCTG

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MISQIVQKDLKPLTLAIDHGQYTTEILSKIGQAGGFRHHIPSLNNGELNLFGTIQDMATVSEECMSTGFMMWAQTVCAWY
IENSENEWLKSEILPKIVDGEYFGATALSNPMKYFAGIEDLKLSAEETEDGYIINGTLPWVSNLLEGSDKHFFGSIFNVH
DHDKKNKKDVMAIIPCNLEGLTMKQMAEFVGMEGTGTYSLMFDNAFLPKKYLLADSLKPYLNKIKSGFILLQTGMAGGVI
KGAINEMERANLTLSEINEYLDDSPEELAEDLEDAIDLIESLCEEPFTPGEEYFKSVLEARLVGAEICRRAADSVMQHAG
AKGYLVDAGPQRKLREAYFVIIVTPSIKHLRKEIARIEAA

Sequences:

>Translated_360_residues
MISQIVQKDLKPLTLAIDHGQYTTEILSKIGQAGGFRHHIPSLNNGELNLFGTIQDMATVSEECMSTGFMMWAQTVCAWY
IENSENEWLKSEILPKIVDGEYFGATALSNPMKYFAGIEDLKLSAEETEDGYIINGTLPWVSNLLEGSDKHFFGSIFNVH
DHDKKNKKDVMAIIPCNLEGLTMKQMAEFVGMEGTGTYSLMFDNAFLPKKYLLADSLKPYLNKIKSGFILLQTGMAGGVI
KGAINEMERANLTLSEINEYLDDSPEELAEDLEDAIDLIESLCEEPFTPGEEYFKSVLEARLVGAEICRRAADSVMQHAG
AKGYLVDAGPQRKLREAYFVIIVTPSIKHLRKEIARIEAA
>Mature_360_residues
MISQIVQKDLKPLTLAIDHGQYTTEILSKIGQAGGFRHHIPSLNNGELNLFGTIQDMATVSEECMSTGFMMWAQTVCAWY
IENSENEWLKSEILPKIVDGEYFGATALSNPMKYFAGIEDLKLSAEETEDGYIINGTLPWVSNLLEGSDKHFFGSIFNVH
DHDKKNKKDVMAIIPCNLEGLTMKQMAEFVGMEGTGTYSLMFDNAFLPKKYLLADSLKPYLNKIKSGFILLQTGMAGGVI
KGAINEMERANLTLSEINEYLDDSPEELAEDLEDAIDLIESLCEEPFTPGEEYFKSVLEARLVGAEICRRAADSVMQHAG
AKGYLVDAGPQRKLREAYFVIIVTPSIKHLRKEIARIEAA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=355, Percent_Identity=23.3802816901408, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 40097; Mature: 40097

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISQIVQKDLKPLTLAIDHGQYTTEILSKIGQAGGFRHHIPSLNNGELNLFGTIQDMATV
CCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECHHHHHHH
SEECMSTGFMMWAQTVCAWYIENSENEWLKSEILPKIVDGEYFGATALSNPMKYFAGIED
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHCCCCCCHHHHCCHHHHHCCHHH
LKLSAEETEDGYIINGTLPWVSNLLEGSDKHFFGSIFNVHDHDKKNKKDVMAIIPCNLEG
HCCCCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCCCC
LTMKQMAEFVGMEGTGTYSLMFDNAFLPKKYLLADSLKPYLNKIKSGFILLQTGMAGGVI
CCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
KGAINEMERANLTLSEINEYLDDSPEELAEDLEDAIDLIESLCEEPFTPGEEYFKSVLEA
HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RLVGAEICRRAADSVMQHAGAKGYLVDAGPQRKLREAYFVIIVTPSIKHLRKEIARIEAA
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCEEEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MISQIVQKDLKPLTLAIDHGQYTTEILSKIGQAGGFRHHIPSLNNGELNLFGTIQDMATV
CCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCHHCCCCCCCCCEEEEECHHHHHHH
SEECMSTGFMMWAQTVCAWYIENSENEWLKSEILPKIVDGEYFGATALSNPMKYFAGIED
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHCCCCCCHHHHCCHHHHHCCHHH
LKLSAEETEDGYIINGTLPWVSNLLEGSDKHFFGSIFNVHDHDKKNKKDVMAIIPCNLEG
HCCCCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCCCEEEEECCCCCC
LTMKQMAEFVGMEGTGTYSLMFDNAFLPKKYLLADSLKPYLNKIKSGFILLQTGMAGGVI
CCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
KGAINEMERANLTLSEINEYLDDSPEELAEDLEDAIDLIESLCEEPFTPGEEYFKSVLEA
HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
RLVGAEICRRAADSVMQHAGAKGYLVDAGPQRKLREAYFVIIVTPSIKHLRKEIARIEAA
HHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHCCEEEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]