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The map label for this gene is yrrC [H]

Identifier: 78357767

GI number: 78357767

Start: 2726144

End: 2728339

Strand: Reverse

Name: yrrC [H]

Synonym: Dde_2725

Alternate gene names: 78357767

Gene position: 2728339-2726144 (Counterclockwise)

Preceding gene: 78357768

Following gene: 78357766

Centisome position: 73.14

GC content: 58.38

Gene sequence:

>2196_bases
ATGCAGGATCCCGCCCCGCAGGAAGAGATGGACGCACAGGTCGAGCTGGTAGGCACACTGGAGCGTGTGGTTTTTCACAA
TGAGGAAAACGGATACACGGTGTTCCGGCTTAAGGTGCAGGGCAACCGCGATCAGGTGACGGTGGTGGGCCACATGGTGG
AGCCGCAGGCCGGTGTGGCGTTGTCGCTCAAGGGGGACTGGACGGAAAATCCCCGTTTCGGCCGTCAGTTTCAGATGTCC
AGCTTTGATCAGGTGCTGCCTGCCACGCTGGAAGGCATCCGGCATTATCTTTCTTCGGGCCTTATCAAAGGCGTGGGGGA
AAAGATGGCGGGCCGCATCGTTGAAACCTTCGGCACCGGGACATTCAACGTGCTGGATGACGAACCGGAGCGCATGCTGG
AGGTGGAGGGCGTCGGGCAGAAGCTTATGGAGCGCATCCGCGACGGATGGGCCGAGCACAGGGGTATCCGCGACCTCATC
ATGTTTTTGCAGCCCCACGGGGTAAGCACCTCGTACGCGGTGCGCATATACCGGCATTACGGTCAGCAGGCTCTGGCCGT
GGTGCGCGAAAACCCCTACCGGCTGGCCATGGACATACGCGGCATAGGTTTTCTGACCGCAGATGCCGTGGCGCAGAAAC
TGGGTTTTGCCCGCGACTGCGACCTGCGTGCGGAGGCCGGTCTGCTCTACATGCTCATGCGTCTGACTGAGGACGGCCAT
GTGTACTACCCCCGCGACGAACTGGTCATACAGACTTCGGACAAGCTGGAAATTTCCGCGCCCATGGTCGATCAGGCCAT
AGACAACCTGCAGCTGGAAGAGCGCATCGTTCTGGATGAGACGGACAGCGGTCAGGCTGTGTATCTTTCGCGGTATCACC
GGTACGAATCTGGCATATCGCATTATCTGCGCCGTATTCTGCATTCACCCAAATCCGTGTCCGGCGGCGACGAGGATGCG
CTGGTGGACGAGATAGTCGCAGGACTGGACATCACGCTGGCCGAAGAGCAGGAGCAGGCCGTGCGCACCGCGGCCCGCAG
CAAAGTAATGGTGCTTACCGGCGGTCCGGGTACAGGCAAGACCACAATCATCAACGCCATTATCAAAGTGTTCGCGGCCA
TGAAGGCGCGCATTCTGCTGGCTGCTCCCACGGGAAGAGCGGCCAAACGCATGAGCGAAACCAGCGGGCGCGAGTCCAAG
ACCATTCACCGGCTTCTGGAATACAGCCCGCGCGAGGACGGTTTTTCGCGCAACGAGAACAATCCGCTGGCCTGCAGCCT
GCTGGTGGTGGATGAAGCCTCGATGATGGACACCATGCTCATGTACCATCTGCTTAAAGCGGTGCCGCTGGGGGCCACTG
TGGTTTTTGTGGGTGATGTGAATCAGCTGCCTTCCGTCGGGCCGGGCAACGTGCTGCAGGATGTCATCCGGTCGGGCGTG
GTGGACGTGGTGGAACTGGTGGAAGTGTTCCGGCAGGCGCAGGAAAGTGAAATAATCTGCAACGCACACCTTATCAATCA
GGGCGAGATTCCGTCGCTGGAATCTTCCAAAGACCGGTTGAGCGATTTTTATTTCATCAGGCAGGAAGACCCGGACCGCG
TGGCCGATATGGTTGTCGATCTGGTGAAAAATCATATTCCCCGCAGATTCCGGCTGGACTCCATAAATGATATTCAGGTG
CTGACGCCCATGCACAAGGGAACAGCCGGCGCCGCCAACCTGAATACGCGGCTGCAGGAGGCTCTTAACCCCAAAACGCT
GGTCATTCAGCGCGGCGAGCGGCAGTTCCGGCTGGACGACAAAGTGATGCAGATACGCAATAACTACGAAAAAGATGTCT
TTAACGGAGACATAGGGCGCATCTGCAGGCTTGATAAGGAAGAGCGCGAGCTGACTGTCCGGTTCGACGAAGAACGTAAT
GTAGTGTACGAATTTTCAGAGCTGGATGAACTGGTTCCTGCCTATGCCATATCAGTGCACAAGTCGCAGGGGTCGGAATA
TCCCGCCGTGGTCATGCCTGTGCTGACACAGCACTATGTGCTGCTGCAGCGCAACCTGCTGTATACCGGTGTCACCCGCG
GCAAGCGGCTGGTGGTGCTGGTGGGTTCGCAGCGCGCGCTGGCCATTGCCGTCAAAAATAATAAGATGCAGAAACGCTTT
ACGTATCTGGCGCAGCGCCTGGCCCGCGGGGTATGA

Upstream 100 bases:

>100_bases
AGTAACACCTTGACGGCATGTCGGGTACCGCCCATACCGGCAGAAAACATAACATCAAATAATCGACGGCTGATGCCGGA
GTTGACGGACTGGTAAGAGC

Downstream 100 bases:

>100_bases
CCGGCGGCGCCGGACGGTGCGGTGCTGCGGTGTATGTAAACAGCGGATGCTTCCGCGACAGGTGCTGCCATGATTTCATT
GCGTGTTGTCTGTGTGCTGC

Product: helicase RecD/TraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 731; Mature: 731

Protein sequence:

>731_residues
MQDPAPQEEMDAQVELVGTLERVVFHNEENGYTVFRLKVQGNRDQVTVVGHMVEPQAGVALSLKGDWTENPRFGRQFQMS
SFDQVLPATLEGIRHYLSSGLIKGVGEKMAGRIVETFGTGTFNVLDDEPERMLEVEGVGQKLMERIRDGWAEHRGIRDLI
MFLQPHGVSTSYAVRIYRHYGQQALAVVRENPYRLAMDIRGIGFLTADAVAQKLGFARDCDLRAEAGLLYMLMRLTEDGH
VYYPRDELVIQTSDKLEISAPMVDQAIDNLQLEERIVLDETDSGQAVYLSRYHRYESGISHYLRRILHSPKSVSGGDEDA
LVDEIVAGLDITLAEEQEQAVRTAARSKVMVLTGGPGTGKTTIINAIIKVFAAMKARILLAAPTGRAAKRMSETSGRESK
TIHRLLEYSPREDGFSRNENNPLACSLLVVDEASMMDTMLMYHLLKAVPLGATVVFVGDVNQLPSVGPGNVLQDVIRSGV
VDVVELVEVFRQAQESEIICNAHLINQGEIPSLESSKDRLSDFYFIRQEDPDRVADMVVDLVKNHIPRRFRLDSINDIQV
LTPMHKGTAGAANLNTRLQEALNPKTLVIQRGERQFRLDDKVMQIRNNYEKDVFNGDIGRICRLDKEERELTVRFDEERN
VVYEFSELDELVPAYAISVHKSQGSEYPAVVMPVLTQHYVLLQRNLLYTGVTRGKRLVVLVGSQRALAIAVKNNKMQKRF
TYLAQRLARGV

Sequences:

>Translated_731_residues
MQDPAPQEEMDAQVELVGTLERVVFHNEENGYTVFRLKVQGNRDQVTVVGHMVEPQAGVALSLKGDWTENPRFGRQFQMS
SFDQVLPATLEGIRHYLSSGLIKGVGEKMAGRIVETFGTGTFNVLDDEPERMLEVEGVGQKLMERIRDGWAEHRGIRDLI
MFLQPHGVSTSYAVRIYRHYGQQALAVVRENPYRLAMDIRGIGFLTADAVAQKLGFARDCDLRAEAGLLYMLMRLTEDGH
VYYPRDELVIQTSDKLEISAPMVDQAIDNLQLEERIVLDETDSGQAVYLSRYHRYESGISHYLRRILHSPKSVSGGDEDA
LVDEIVAGLDITLAEEQEQAVRTAARSKVMVLTGGPGTGKTTIINAIIKVFAAMKARILLAAPTGRAAKRMSETSGRESK
TIHRLLEYSPREDGFSRNENNPLACSLLVVDEASMMDTMLMYHLLKAVPLGATVVFVGDVNQLPSVGPGNVLQDVIRSGV
VDVVELVEVFRQAQESEIICNAHLINQGEIPSLESSKDRLSDFYFIRQEDPDRVADMVVDLVKNHIPRRFRLDSINDIQV
LTPMHKGTAGAANLNTRLQEALNPKTLVIQRGERQFRLDDKVMQIRNNYEKDVFNGDIGRICRLDKEERELTVRFDEERN
VVYEFSELDELVPAYAISVHKSQGSEYPAVVMPVLTQHYVLLQRNLLYTGVTRGKRLVVLVGSQRALAIAVKNNKMQKRF
TYLAQRLARGV
>Mature_731_residues
MQDPAPQEEMDAQVELVGTLERVVFHNEENGYTVFRLKVQGNRDQVTVVGHMVEPQAGVALSLKGDWTENPRFGRQFQMS
SFDQVLPATLEGIRHYLSSGLIKGVGEKMAGRIVETFGTGTFNVLDDEPERMLEVEGVGQKLMERIRDGWAEHRGIRDLI
MFLQPHGVSTSYAVRIYRHYGQQALAVVRENPYRLAMDIRGIGFLTADAVAQKLGFARDCDLRAEAGLLYMLMRLTEDGH
VYYPRDELVIQTSDKLEISAPMVDQAIDNLQLEERIVLDETDSGQAVYLSRYHRYESGISHYLRRILHSPKSVSGGDEDA
LVDEIVAGLDITLAEEQEQAVRTAARSKVMVLTGGPGTGKTTIINAIIKVFAAMKARILLAAPTGRAAKRMSETSGRESK
TIHRLLEYSPREDGFSRNENNPLACSLLVVDEASMMDTMLMYHLLKAVPLGATVVFVGDVNQLPSVGPGNVLQDVIRSGV
VDVVELVEVFRQAQESEIICNAHLINQGEIPSLESSKDRLSDFYFIRQEDPDRVADMVVDLVKNHIPRRFRLDSINDIQV
LTPMHKGTAGAANLNTRLQEALNPKTLVIQRGERQFRLDDKVMQIRNNYEKDVFNGDIGRICRLDKEERELTVRFDEERN
VVYEFSELDELVPAYAISVHKSQGSEYPAVVMPVLTQHYVLLQRNLLYTGVTRGKRLVVLVGSQRALAIAVKNNKMQKRF
TYLAQRLARGV

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=411, Percent_Identity=27.9805352798054, Blast_Score=134, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 82123; Mature: 82123

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDPAPQEEMDAQVELVGTLERVVFHNEENGYTVFRLKVQGNRDQVTVVGHMVEPQAGVA
CCCCCCCHHHCCHHHHHHHHHHHHEECCCCCEEEEEEEEECCCCEEEEEEEEECCCCCEE
LSLKGDWTENPRFGRQFQMSSFDQVLPATLEGIRHYLSSGLIKGVGEKMAGRIVETFGTG
EEECCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TFNVLDDEPERMLEVEGVGQKLMERIRDGWAEHRGIRDLIMFLQPHGVSTSYAVRIYRHY
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHH
GQQALAVVRENPYRLAMDIRGIGFLTADAVAQKLGFARDCDLRAEAGLLYMLMRLTEDGH
CHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
VYYPRDELVIQTSDKLEISAPMVDQAIDNLQLEERIVLDETDSGQAVYLSRYHRYESGIS
EEECCCCEEEEECCCEEECCCHHHHHHHCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHH
HYLRRILHSPKSVSGGDEDALVDEIVAGLDITLAEEQEQAVRTAARSKVMVLTGGPGTGK
HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHCEEEEEECCCCCCH
TTIINAIIKVFAAMKARILLAAPTGRAAKRMSETSGRESKTIHRLLEYSPREDGFSRNEN
HHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
NPLACSLLVVDEASMMDTMLMYHLLKAVPLGATVVFVGDVNQLPSVGPGNVLQDVIRSGV
CCEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
VDVVELVEVFRQAQESEIICNAHLINQGEIPSLESSKDRLSDFYFIRQEDPDRVADMVVD
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHEEEEECCCHHHHHHHHHH
LVKNHIPRRFRLDSINDIQVLTPMHKGTAGAANLNTRLQEALNPKTLVIQRGERQFRLDD
HHHHCCCCEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHH
KVMQIRNNYEKDVFNGDIGRICRLDKEERELTVRFDEERNVVYEFSELDELVPAYAISVH
HHHHHHHCCCHHHCCCCHHHHHCCCCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHEEEE
KSQGSEYPAVVMPVLTQHYVLLQRNLLYTGVTRGKRLVVLVGSQRALAIAVKNNKMQKRF
CCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCEEEEEEECCHHHHHH
TYLAQRLARGV
HHHHHHHHCCC
>Mature Secondary Structure
MQDPAPQEEMDAQVELVGTLERVVFHNEENGYTVFRLKVQGNRDQVTVVGHMVEPQAGVA
CCCCCCCHHHCCHHHHHHHHHHHHEECCCCCEEEEEEEEECCCCEEEEEEEEECCCCCEE
LSLKGDWTENPRFGRQFQMSSFDQVLPATLEGIRHYLSSGLIKGVGEKMAGRIVETFGTG
EEECCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TFNVLDDEPERMLEVEGVGQKLMERIRDGWAEHRGIRDLIMFLQPHGVSTSYAVRIYRHY
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHH
GQQALAVVRENPYRLAMDIRGIGFLTADAVAQKLGFARDCDLRAEAGLLYMLMRLTEDGH
CHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCC
VYYPRDELVIQTSDKLEISAPMVDQAIDNLQLEERIVLDETDSGQAVYLSRYHRYESGIS
EEECCCCEEEEECCCEEECCCHHHHHHHCCCCCCEEEEECCCCCCEEEHHHHHHHHHHHH
HYLRRILHSPKSVSGGDEDALVDEIVAGLDITLAEEQEQAVRTAARSKVMVLTGGPGTGK
HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHCEEEEEECCCCCCH
TTIINAIIKVFAAMKARILLAAPTGRAAKRMSETSGRESKTIHRLLEYSPREDGFSRNEN
HHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
NPLACSLLVVDEASMMDTMLMYHLLKAVPLGATVVFVGDVNQLPSVGPGNVLQDVIRSGV
CCEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHH
VDVVELVEVFRQAQESEIICNAHLINQGEIPSLESSKDRLSDFYFIRQEDPDRVADMVVD
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHEEEEECCCHHHHHHHHHH
LVKNHIPRRFRLDSINDIQVLTPMHKGTAGAANLNTRLQEALNPKTLVIQRGERQFRLDD
HHHHCCCCEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHH
KVMQIRNNYEKDVFNGDIGRICRLDKEERELTVRFDEERNVVYEFSELDELVPAYAISVH
HHHHHHHCCCHHHCCCCHHHHHCCCCCCCEEEEEECCCCCEEEEHHHHHHHHHHHHEEEE
KSQGSEYPAVVMPVLTQHYVLLQRNLLYTGVTRGKRLVVLVGSQRALAIAVKNNKMQKRF
CCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEEECCCCEEEEEEECCHHHHHH
TYLAQRLARGV
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]