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The map label for this gene is secD

Identifier: 78356861

GI number: 78356861

Start: 1868267

End: 1869859

Strand: Direct

Name: secD

Synonym: Dde_1818

Alternate gene names: 78356861

Gene position: 1868267-1869859 (Clockwise)

Preceding gene: 78356860

Following gene: 78356862

Centisome position: 50.08

GC content: 56.94

Gene sequence:

>1593_bases
ATGAAAGAGGGCCTGCGATGGAGAATCGCGCTCACACTCGTTGTGGCAGTGATGGGGCTGGCCTATACACTGCCTAGCAT
TCCCGCCTTCAAATCCTCCCCGTTGCAGAAAATCCTGCCCGACAACAAAGTCAGCCTCGGCCTTGACCTTATGGGCGGTA
TTCATCTGACACTGGGTGTAGATGTGGACAAAGCGCTGGAAAACGCATTGTCCCAGACGGGAAATGATCTGCGTGAGATC
GCGCGTGACGAAGGAATTTTTCTTATGCGGCCCCGCGTGGTCGCAGGAGACCGGCTGGAGTTCATTCTGCTGAAAAAAGA
GCAGCGGGGTGAACTGGATAGCCTGCTGAAAAAACAGTTCGAAAGACTTACTGTTTCGCCCCCTCAGGTGCTGAACGACG
GCAGGGTGAAATATTCTCTGGCCTTCAGCTCTGAGTACAAAAAGTATCTTTCTAATCTGGCACTTGATCAGGCCGTTAAA
ACCATCCGCAACCGTATTGACCAGTTCGGCGTGGCCGAACCCGACATACGCAAGCAGCAGGACAACCGCATTCAGGTGCA
GCTGCCCGGCCTTAACGATCCGGAAAGGGCCATCCAGATCATCGGCAAAACCGCCCACCTTGAGTTCAAGATGGTGCGCG
ACGATGTGGATCCCGCCAATGTGGCCAGAGGCATTGTTCCGCCCGGAACTGAAATCCGCGAGATGCAGGAACGGGGCGCC
TCGGGTGCCTCGATACCCGTTGTAGTCAACCGCGAAGCGGTAATGACCGGCGAAAATATTGTGGACGCCCGCGCCAGCTT
CGACCAGTTCAACCAGCCCTACGTCATCATGACCTTCAACGACCGCGGGGCACGGATGTTTGAACTGGTGACCGGTGAAA
ACAAAGGTAAGCGGATGGCCATTGTGCTGGACGGCAAAGTGTACTCCGCGCCTGTTATTCAGGAAAAAATCAGAGGCGGG
CGGGCCAGCATCACAGGCCGCTTCAGCGATGCCGAAGCACACGACCTTGCGCTTGTGCTGCGTGCCGGCGCATTGCCCGC
ACCGGTGCATATTCTTGAAGAACGGTCTGTCGGCCCTTCGCTGGGCCAGCAGTCCATTGACCAGGGTGTCACCGCGGCTC
TGGCCGGCGGTGTGCTGGTGGTCATATTCATGGTTGTCTACTACGGTTTCGCCGGTCTGGTTGCCAACGTGGCACTCAGT
TTCACTCTGGTGCTCATCCTTGCCGGCCTTGCCGGATTCGGGGCAACCCTGACGCTGCCGGGCATTGCCGGCATCATCCT
GACACTGGGGATGGCCGTAGACGCCAACGTACTGATCTTCGAACGAATCCGGGAAGAACTGCGTAAGGGGCTAACCCCCC
GGGCAGCCATTCAGGAAGGGTACAGCAGGGCCACTCTGACCATTGTGGATGCCAACATCACCACCATCATAGCGGCTGTC
ATTCTGTATCAGTTCGGAACCGGCCCGATACGCGGTTTTGCCGTCACGCTGAGTCTCGGCATTCTGGCCTCCATGTTCAC
CGCTATCTTTGTATCGCGCGTGCTTATGGATATCTGGAGCCTGAAACGCCAGGGCCGAAAGCTCAGCATCTAA

Upstream 100 bases:

>100_bases
AAAGAAGCCTGATGCCCCGCATCGGGCGACAAGGCACGCCTGCCTGCATCAGCAGGCACACAACGGCGTGTTTTTCAGCC
CACTGAATAGAGGAGTTGCA

Downstream 100 bases:

>100_bases
GGAGAGGAATTCATGGGATTGTCCATAATAAAGCCCGATATCAATATTGATTTTGTCGGTCTGCGCAAAATATCTCTGTG
CCTTTCCGGAGTGGTTCTCC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MKEGLRWRIALTLVVAVMGLAYTLPSIPAFKSSPLQKILPDNKVSLGLDLMGGIHLTLGVDVDKALENALSQTGNDLREI
ARDEGIFLMRPRVVAGDRLEFILLKKEQRGELDSLLKKQFERLTVSPPQVLNDGRVKYSLAFSSEYKKYLSNLALDQAVK
TIRNRIDQFGVAEPDIRKQQDNRIQVQLPGLNDPERAIQIIGKTAHLEFKMVRDDVDPANVARGIVPPGTEIREMQERGA
SGASIPVVVNREAVMTGENIVDARASFDQFNQPYVIMTFNDRGARMFELVTGENKGKRMAIVLDGKVYSAPVIQEKIRGG
RASITGRFSDAEAHDLALVLRAGALPAPVHILEERSVGPSLGQQSIDQGVTAALAGGVLVVIFMVVYYGFAGLVANVALS
FTLVLILAGLAGFGATLTLPGIAGIILTLGMAVDANVLIFERIREELRKGLTPRAAIQEGYSRATLTIVDANITTIIAAV
ILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRKLSI

Sequences:

>Translated_530_residues
MKEGLRWRIALTLVVAVMGLAYTLPSIPAFKSSPLQKILPDNKVSLGLDLMGGIHLTLGVDVDKALENALSQTGNDLREI
ARDEGIFLMRPRVVAGDRLEFILLKKEQRGELDSLLKKQFERLTVSPPQVLNDGRVKYSLAFSSEYKKYLSNLALDQAVK
TIRNRIDQFGVAEPDIRKQQDNRIQVQLPGLNDPERAIQIIGKTAHLEFKMVRDDVDPANVARGIVPPGTEIREMQERGA
SGASIPVVVNREAVMTGENIVDARASFDQFNQPYVIMTFNDRGARMFELVTGENKGKRMAIVLDGKVYSAPVIQEKIRGG
RASITGRFSDAEAHDLALVLRAGALPAPVHILEERSVGPSLGQQSIDQGVTAALAGGVLVVIFMVVYYGFAGLVANVALS
FTLVLILAGLAGFGATLTLPGIAGIILTLGMAVDANVLIFERIREELRKGLTPRAAIQEGYSRATLTIVDANITTIIAAV
ILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRKLSI
>Mature_530_residues
MKEGLRWRIALTLVVAVMGLAYTLPSIPAFKSSPLQKILPDNKVSLGLDLMGGIHLTLGVDVDKALENALSQTGNDLREI
ARDEGIFLMRPRVVAGDRLEFILLKKEQRGELDSLLKKQFERLTVSPPQVLNDGRVKYSLAFSSEYKKYLSNLALDQAVK
TIRNRIDQFGVAEPDIRKQQDNRIQVQLPGLNDPERAIQIIGKTAHLEFKMVRDDVDPANVARGIVPPGTEIREMQERGA
SGASIPVVVNREAVMTGENIVDARASFDQFNQPYVIMTFNDRGARMFELVTGENKGKRMAIVLDGKVYSAPVIQEKIRGG
RASITGRFSDAEAHDLALVLRAGALPAPVHILEERSVGPSLGQQSIDQGVTAALAGGVLVVIFMVVYYGFAGLVANVALS
FTLVLILAGLAGFGATLTLPGIAGIILTLGMAVDANVLIFERIREELRKGLTPRAAIQEGYSRATLTIVDANITTIIAAV
ILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=554, Percent_Identity=39.5306859205776, Blast_Score=338, Evalue=5e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57668; Mature: 57668

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEGLRWRIALTLVVAVMGLAYTLPSIPAFKSSPLQKILPDNKVSLGLDLMGGIHLTLGV
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEECEEEECCEEEEEEC
DVDKALENALSQTGNDLREIARDEGIFLMRPRVVAGDRLEFILLKKEQRGELDSLLKKQF
CHHHHHHHHHHHCCHHHHHHHHCCCEEEECCEEECCCCEEEEEECCHHCCCHHHHHHHHH
ERLTVSPPQVLNDGRVKYSLAFSSEYKKYLSNLALDQAVKTIRNRIDQFGVAEPDIRKQQ
HHCCCCCHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCC
DNRIQVQLPGLNDPERAIQIIGKTAHLEFKMVRDDVDPANVARGIVPPGTEIREMQERGA
CCEEEEEECCCCCHHHHHHHHCCHHCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHCCC
SGASIPVVVNREAVMTGENIVDARASFDQFNQPYVIMTFNDRGARMFELVTGENKGKRMA
CCCCCEEEECCCEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCEEE
IVLDGKVYSAPVIQEKIRGGRASITGRFSDAEAHDLALVLRAGALPAPVHILEERSVGPS
EEECCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCC
LGQQSIDQGVTAALAGGVLVVIFMVVYYGFAGLVANVALSFTLVLILAGLAGFGATLTLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECH
GIAGIILTLGMAVDANVLIFERIREELRKGLTPRAAIQEGYSRATLTIVDANITTIIAAV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCHHHHHHHH
ILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRKLSI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKEGLRWRIALTLVVAVMGLAYTLPSIPAFKSSPLQKILPDNKVSLGLDLMGGIHLTLGV
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEECEEEECCEEEEEEC
DVDKALENALSQTGNDLREIARDEGIFLMRPRVVAGDRLEFILLKKEQRGELDSLLKKQF
CHHHHHHHHHHHCCHHHHHHHHCCCEEEECCEEECCCCEEEEEECCHHCCCHHHHHHHHH
ERLTVSPPQVLNDGRVKYSLAFSSEYKKYLSNLALDQAVKTIRNRIDQFGVAEPDIRKQQ
HHCCCCCHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCC
DNRIQVQLPGLNDPERAIQIIGKTAHLEFKMVRDDVDPANVARGIVPPGTEIREMQERGA
CCEEEEEECCCCCHHHHHHHHCCHHCEEEEEECCCCCHHHHHCCCCCCCHHHHHHHHCCC
SGASIPVVVNREAVMTGENIVDARASFDQFNQPYVIMTFNDRGARMFELVTGENKGKRMA
CCCCCEEEECCCEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCEEE
IVLDGKVYSAPVIQEKIRGGRASITGRFSDAEAHDLALVLRAGALPAPVHILEERSVGPS
EEECCCCCCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCC
LGQQSIDQGVTAALAGGVLVVIFMVVYYGFAGLVANVALSFTLVLILAGLAGFGATLTLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECH
GIAGIILTLGMAVDANVLIFERIREELRKGLTPRAAIQEGYSRATLTIVDANITTIIAAV
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCHHHHHHHH
ILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRKLSI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA