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The map label for this gene is yciC [H]

Identifier: 78356660

GI number: 78356660

Start: 1665690

End: 1667567

Strand: Direct

Name: yciC [H]

Synonym: Dde_1617

Alternate gene names: 78356660

Gene position: 1665690-1667567 (Clockwise)

Preceding gene: 78356659

Following gene: 78356665

Centisome position: 44.65

GC content: 60.12

Gene sequence:

>1878_bases
ATGCTTACAGATTTTTTCATGCCGCCATCGGGCGGGGCAGCCACAGCCGGCCAGTTGTGTGCTCTGCCGGCCAATGCCAT
TGCCGTAGCCTGCCGTGATGACCGCTTCAGGCGGCTGGTGCGCTGGCTCGGGCTGGCCCGCTGTCAGGGGGCGGAAGGTG
CTTTTACCTGCCGTGTGGCTGATATGCCGGGAGTGTTCGGGCTGGCATGCGAAGAAGTATGCTCTTCGGGCTGCACTCAG
CAGGCGCGTTTCGGCATTTATTATTTTCCCCATGCGGACGAGCAGCTGTGTGATGCCATGCGGCTTGATGCTGCTGTGCT
GACGCAACATACGGCCTATGCGGCACGGGTGCGCGGCTTTGCCACCGATCCTGATTTTGCGGGGCTGTTTCGAACCGGAA
CACTGGATGTTCTGTATGGTTCCGTGCCTGCGGCTTTCGGTTTGCGGCTTGTGGCTGAAAACAGGCTGCGGATACGCTGC
GATGCCGGATTGTACAGTGAAGAAACCGGCTGGGTGGTTGAGCCGGGCGGGCTGGAAGAAGACCTGCCTGCGCTGCTGTT
GTCCAGAAGGATTTATGATGTGCTGGGCGCGGCTCTTTCTGCATGTCTGCAGGAAGCCCCTGTGTTTTTTTCGCGCACGG
AGTATGGCTGCGGACTGCGGCACAGACAGGCTGACGGCAGTGTCAGGCTTGACGAACGGGCGGAAGGAGCCGATGCCGGG
CGCCGTACCGGCGAACTGCTTGTCTGGGGTAACGTCGGCAGTCTGACTGCAGACATTGACGCGGGCCCTCAGCCGGGCGC
AGAGGTGTTGTCATATGTTGCCTGCACTGACTGCAACGTGCAGAAAGGAAACATGCCGGAAGAAGTGGCGGCGGCCCCCT
GCTGGGTGGCGCATGATCTTGAATCGGAAGCCTGCGGCCGCATGCATCCGGTGCTCAACGACAGGCGACCTGCCCTTGTG
GTGGTCAGCGGTTTTCTGGGGTCCGGAAAAACAACTTTTCTCAACAACTGCATAGAATACCACCGTGCCCGCGAACGCTT
TGTGGCTGTTATTCAGAATGAAATGGGGGCTACCGGCGTCGACGGGCATCTGCTGGGCGATTCCGCGTCTGTTCTGGCAC
TGGATGAAGGCTGTGTGTGCTGCACTCTGGCAGGCAGTCTGGCTGCGGGGGTGCGTGATCTGACAGCGCGTTTCAACCCT
CAGGTGATTCTGCTGGAAACAACAGGACTTGCCAATCCGCTGAACCTGCTGGAGGAAATGGGCTCGCTTCGTGAGCTTGT
GCGGCTGGAATGCATGGTAACCGTTGTGGATGCCGCAAACGGAATTTCGACGCTGTCTGACAGCGAAGTCGCCCGCGACC
AGATACGGGGGGCAGATGTCGTCGTCTGCAATAAATGTGATGTGGCCGGGCCGCAAGCCGTTGCCGCCCTGAAGGACGCT
GTGCAGGGCCTTAACCCCAGAGCAATGATTCATACGACGGAGTTCGGCAGCGTGCACCCAGCACTGTTCATGGATGCCGG
CGATGGCAGAAGCGGCAGCGGCCTGATGCCGGCCGTACCCGCGGCGCATGCCGACCACAGACACGAAGGCTATGGCGCTG
TACGTTTTTTCATGCCGCACCCCGTTTCGCGGGAGCAGCTGCGGCAGGCTGTGCAGCAATGCCCGGGGCAACCGTTCCGC
ATCAAGGGGATAGTAACCTCGGCAGGGCAGGACGCAGACCTGCGGGAGAGTCTGCTGGTCCAGCATGTGGCTGGCAGGAC
GGATTTTGAACTGTTGGGTGGCTTTGAGGGAAAGCCCTTTGTGGTTGTCATCGGTAAAAACCTTGATGACGAAGCGCTGT
ACAGTCATTGGCAGCGGCTGGGAGCAACGCGGGAATAA

Upstream 100 bases:

>100_bases
CGTTCGTCTTCGCCTGATTATCTGGGCAACGGCGATACCATTACCTTCTAGGCTGTGTAACCGGGCGGGGCATATGCTCC
GCCCGTTTTCGGGTTTCGCT

Downstream 100 bases:

>100_bases
AGCCGTGTTGCGGCAGCGTACAGTACGGCACGCAGGAACAGGCTGAAAAAAACGGCCTTGCGGAGCTGTTGATAAGAGCA
CACCGGCAGCGGCGGAAAAG

Product: G3E family GTPase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 625; Mature: 625

Protein sequence:

>625_residues
MLTDFFMPPSGGAATAGQLCALPANAIAVACRDDRFRRLVRWLGLARCQGAEGAFTCRVADMPGVFGLACEEVCSSGCTQ
QARFGIYYFPHADEQLCDAMRLDAAVLTQHTAYAARVRGFATDPDFAGLFRTGTLDVLYGSVPAAFGLRLVAENRLRIRC
DAGLYSEETGWVVEPGGLEEDLPALLLSRRIYDVLGAALSACLQEAPVFFSRTEYGCGLRHRQADGSVRLDERAEGADAG
RRTGELLVWGNVGSLTADIDAGPQPGAEVLSYVACTDCNVQKGNMPEEVAAAPCWVAHDLESEACGRMHPVLNDRRPALV
VVSGFLGSGKTTFLNNCIEYHRARERFVAVIQNEMGATGVDGHLLGDSASVLALDEGCVCCTLAGSLAAGVRDLTARFNP
QVILLETTGLANPLNLLEEMGSLRELVRLECMVTVVDAANGISTLSDSEVARDQIRGADVVVCNKCDVAGPQAVAALKDA
VQGLNPRAMIHTTEFGSVHPALFMDAGDGRSGSGLMPAVPAAHADHRHEGYGAVRFFMPHPVSREQLRQAVQQCPGQPFR
IKGIVTSAGQDADLRESLLVQHVAGRTDFELLGGFEGKPFVVVIGKNLDDEALYSHWQRLGATRE

Sequences:

>Translated_625_residues
MLTDFFMPPSGGAATAGQLCALPANAIAVACRDDRFRRLVRWLGLARCQGAEGAFTCRVADMPGVFGLACEEVCSSGCTQ
QARFGIYYFPHADEQLCDAMRLDAAVLTQHTAYAARVRGFATDPDFAGLFRTGTLDVLYGSVPAAFGLRLVAENRLRIRC
DAGLYSEETGWVVEPGGLEEDLPALLLSRRIYDVLGAALSACLQEAPVFFSRTEYGCGLRHRQADGSVRLDERAEGADAG
RRTGELLVWGNVGSLTADIDAGPQPGAEVLSYVACTDCNVQKGNMPEEVAAAPCWVAHDLESEACGRMHPVLNDRRPALV
VVSGFLGSGKTTFLNNCIEYHRARERFVAVIQNEMGATGVDGHLLGDSASVLALDEGCVCCTLAGSLAAGVRDLTARFNP
QVILLETTGLANPLNLLEEMGSLRELVRLECMVTVVDAANGISTLSDSEVARDQIRGADVVVCNKCDVAGPQAVAALKDA
VQGLNPRAMIHTTEFGSVHPALFMDAGDGRSGSGLMPAVPAAHADHRHEGYGAVRFFMPHPVSREQLRQAVQQCPGQPFR
IKGIVTSAGQDADLRESLLVQHVAGRTDFELLGGFEGKPFVVVIGKNLDDEALYSHWQRLGATRE
>Mature_625_residues
MLTDFFMPPSGGAATAGQLCALPANAIAVACRDDRFRRLVRWLGLARCQGAEGAFTCRVADMPGVFGLACEEVCSSGCTQ
QARFGIYYFPHADEQLCDAMRLDAAVLTQHTAYAARVRGFATDPDFAGLFRTGTLDVLYGSVPAAFGLRLVAENRLRIRC
DAGLYSEETGWVVEPGGLEEDLPALLLSRRIYDVLGAALSACLQEAPVFFSRTEYGCGLRHRQADGSVRLDERAEGADAG
RRTGELLVWGNVGSLTADIDAGPQPGAEVLSYVACTDCNVQKGNMPEEVAAAPCWVAHDLESEACGRMHPVLNDRRPALV
VVSGFLGSGKTTFLNNCIEYHRARERFVAVIQNEMGATGVDGHLLGDSASVLALDEGCVCCTLAGSLAAGVRDLTARFNP
QVILLETTGLANPLNLLEEMGSLRELVRLECMVTVVDAANGISTLSDSEVARDQIRGADVVVCNKCDVAGPQAVAALKDA
VQGLNPRAMIHTTEFGSVHPALFMDAGDGRSGSGLMPAVPAAHADHRHEGYGAVRFFMPHPVSREQLRQAVQQCPGQPFR
IKGIVTSAGQDADLRESLLVQHVAGRTDFELLGGFEGKPFVVVIGKNLDDEALYSHWQRLGATRE

Specific function: May bind GTP. Might act as metal chaperone (Potential). Contributes to optimal growth under starvation for zinc [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI126722884, Length=341, Percent_Identity=27.5659824046921, Blast_Score=90, Evalue=6e-18,
Organism=Homo sapiens, GI148727351, Length=343, Percent_Identity=27.6967930029155, Blast_Score=90, Evalue=8e-18,
Organism=Homo sapiens, GI146231952, Length=343, Percent_Identity=27.6967930029155, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI33469141, Length=341, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI223941779, Length=328, Percent_Identity=27.4390243902439, Blast_Score=86, Evalue=1e-16,
Organism=Homo sapiens, GI223941776, Length=333, Percent_Identity=27.6276276276276, Blast_Score=82, Evalue=2e-15,
Organism=Escherichia coli, GI1788499, Length=183, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI87082430, Length=278, Percent_Identity=24.8201438848921, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324356, Length=276, Percent_Identity=23.5507246376812, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 66881; Mature: 66881

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDFFMPPSGGAATAGQLCALPANAIAVACRDDRFRRLVRWLGLARCQGAEGAFTCRVA
CCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEE
DMPGVFGLACEEVCSSGCTQQARFGIYYFPHADEQLCDAMRLDAAVLTQHTAYAARVRGF
CCCCHHHHHHHHHHHCCCCCHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ATDPDFAGLFRTGTLDVLYGSVPAAFGLRLVAENRLRIRCDAGLYSEETGWVVEPGGLEE
CCCCCCCHHEECCCCEEEECCCHHHHCEEEEECCCEEEEECCCCCCCCCCCEECCCCCCH
DLPALLLSRRIYDVLGAALSACLQEAPVFFSRTEYGCGLRHRQADGSVRLDERAEGADAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCCCCEEECCCCCCCCCC
RRTGELLVWGNVGSLTADIDAGPQPGAEVLSYVACTDCNVQKGNMPEEVAAAPCWVAHDL
CCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEECC
ESEACGRMHPVLNDRRPALVVVSGFLGSGKTTFLNNCIEYHRARERFVAVIQNEMGATGV
CHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGHLLGDSASVLALDEGCVCCTLAGSLAAGVRDLTARFNPQVILLETTGLANPLNLLEEM
CCEEECCCCCEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
GSLRELVRLECMVTVVDAANGISTLSDSEVARDQIRGADVVVCNKCDVAGPQAVAALKDA
HHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
VQGLNPRAMIHTTEFGSVHPALFMDAGDGRSGSGLMPAVPAAHADHRHEGYGAVRFFMPH
HHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
PVSREQLRQAVQQCPGQPFRIKGIVTSAGQDADLRESLLVQHVAGRTDFELLGGFEGKPF
CCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCE
VVVIGKNLDDEALYSHWQRLGATRE
EEEECCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLTDFFMPPSGGAATAGQLCALPANAIAVACRDDRFRRLVRWLGLARCQGAEGAFTCRVA
CCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEE
DMPGVFGLACEEVCSSGCTQQARFGIYYFPHADEQLCDAMRLDAAVLTQHTAYAARVRGF
CCCCHHHHHHHHHHHCCCCCHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
ATDPDFAGLFRTGTLDVLYGSVPAAFGLRLVAENRLRIRCDAGLYSEETGWVVEPGGLEE
CCCCCCCHHEECCCCEEEECCCHHHHCEEEEECCCEEEEECCCCCCCCCCCEECCCCCCH
DLPALLLSRRIYDVLGAALSACLQEAPVFFSRTEYGCGLRHRQADGSVRLDERAEGADAG
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEECCCCCEEECCCCCCCCCC
RRTGELLVWGNVGSLTADIDAGPQPGAEVLSYVACTDCNVQKGNMPEEVAAAPCWVAHDL
CCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCEEECC
ESEACGRMHPVLNDRRPALVVVSGFLGSGKTTFLNNCIEYHRARERFVAVIQNEMGATGV
CHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DGHLLGDSASVLALDEGCVCCTLAGSLAAGVRDLTARFNPQVILLETTGLANPLNLLEEM
CCEEECCCCCEEEECCCCEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
GSLRELVRLECMVTVVDAANGISTLSDSEVARDQIRGADVVVCNKCDVAGPQAVAALKDA
HHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHH
VQGLNPRAMIHTTEFGSVHPALFMDAGDGRSGSGLMPAVPAAHADHRHEGYGAVRFFMPH
HHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC
PVSREQLRQAVQQCPGQPFRIKGIVTSAGQDADLRESLLVQHVAGRTDFELLGGFEGKPF
CCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHCCCCCCCE
VVVIGKNLDDEALYSHWQRLGATRE
EEEECCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 9811636 [H]