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The map label for this gene is rfaQ [H]

Identifier: 78356478

GI number: 78356478

Start: 1458277

End: 1459395

Strand: Reverse

Name: rfaQ [H]

Synonym: Dde_1433

Alternate gene names: 78356478

Gene position: 1459395-1458277 (Counterclockwise)

Preceding gene: 78356486

Following gene: 78356469

Centisome position: 39.12

GC content: 59.34

Gene sequence:

>1119_bases
ATGAATATGCATCATCAAGAGCAGATAACAGAAATCGCCATAAATGACAGCACTGTCCGTAAAATTCTTGTGTGCCAGCT
GCGTCAGATAGGTGATGTGGTACTGGCCACACCCGCCATAGAGCTGCTTGCCAGACGTTTTCCCTATGCCGAAATACATG
TGCTGACGGAAAAACGCTGCGCCGCCATGCTGGAAAACAATCCTTTTGTCACCACCGTGTGGAGCATCGACAAAAAGGAA
CTGCCCGACCTCATCCGTGAAATAGCCTTTTACCGCAAGGTGGCAGCCGAAAAATTCGATATTGTGGTTGCCTTTCAACA
GCTGCCCCGCTGCCGCTGGGTTCTGGCTTTTTCCCGCGCACCTGTCAGGCTGAGCTACCCGCCGGCATGGCACAGCCGCT
GGCTTTTCACCCACTGGCATCCGCTGGAGCCGGGGTATTCCGCCCGGACAAAAGCCAATGTGCTCAAGCCGCTGGGAATC
GCATGGCAGGGCGAAAAACCGCGCATATACCTGACCGACGAAGAAATGGACAATGCCGCGCACCTGCTGGAACAGGCAGG
CGTGGCCCCCCGTCATCAGCTGATTACACTGGACCCGACCCACCGCCGCGCCACCCGCCGCTATCCGGCACGACACTACG
GGCGTGTGGTTGCCGACCTGTACCGCCGCAACCCCGACATACGTTTTCTGCTGCTGTTCGGCCCCGGTGAAGAACAGGAA
GCCATGGAGGTTGTCCGGCAGGCCGGGTGCGACGGGGCTTTCATCATTCCGCAGCACATCCTCACCCTGCGGCAGATGGC
CGCGTGCATGGCGCATGCACGCATGCATCTGGGCAACTGCTCCGCACCGCGCCACATCGCCGTGGCCGTGGATACGCCCA
GCATGACCGTACTGGGGTCCACCACCTCGTCATGGACCTTTCCTTCCCCCGAACATGACCACATTATTCTGGGGCTGGAC
TGTCAGCACTGCAATCAGGACACCTGCCGCCGCAACGACATGGCATGTCTGGAGCAGCTGGCACCGCAGGTGGTGACACA
ACGCGTGCTGGATCATCTGGAAAAGACCGGAGGGCATCCCGCCGCCCTGAGGCATCGCCAGAAAACAGCGGCAGTCTGA

Upstream 100 bases:

>100_bases
CAGACTGTACTTTGCGACAGCTTCAAGATACATTCCGCGCCTTGCAGGCGCCGGTGCCCCTGCGCCGCTGCCTACCCGTA
TACGGAGCACAACCGCCATA

Downstream 100 bases:

>100_bases
AAAAACCGTATCGTCCGGCACAAAAAAAGCGGAGCACTGCTCCGCTTTTTTACATCTTTTCACAGCATGTCCGCAGGCTG
CGGCCGCTATTCCCAGATCA

Product: heptosyltransferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MNMHHQEQITEIAINDSTVRKILVCQLRQIGDVVLATPAIELLARRFPYAEIHVLTEKRCAAMLENNPFVTTVWSIDKKE
LPDLIREIAFYRKVAAEKFDIVVAFQQLPRCRWVLAFSRAPVRLSYPPAWHSRWLFTHWHPLEPGYSARTKANVLKPLGI
AWQGEKPRIYLTDEEMDNAAHLLEQAGVAPRHQLITLDPTHRRATRRYPARHYGRVVADLYRRNPDIRFLLLFGPGEEQE
AMEVVRQAGCDGAFIIPQHILTLRQMAACMAHARMHLGNCSAPRHIAVAVDTPSMTVLGSTTSSWTFPSPEHDHIILGLD
CQHCNQDTCRRNDMACLEQLAPQVVTQRVLDHLEKTGGHPAALRHRQKTAAV

Sequences:

>Translated_372_residues
MNMHHQEQITEIAINDSTVRKILVCQLRQIGDVVLATPAIELLARRFPYAEIHVLTEKRCAAMLENNPFVTTVWSIDKKE
LPDLIREIAFYRKVAAEKFDIVVAFQQLPRCRWVLAFSRAPVRLSYPPAWHSRWLFTHWHPLEPGYSARTKANVLKPLGI
AWQGEKPRIYLTDEEMDNAAHLLEQAGVAPRHQLITLDPTHRRATRRYPARHYGRVVADLYRRNPDIRFLLLFGPGEEQE
AMEVVRQAGCDGAFIIPQHILTLRQMAACMAHARMHLGNCSAPRHIAVAVDTPSMTVLGSTTSSWTFPSPEHDHIILGLD
CQHCNQDTCRRNDMACLEQLAPQVVTQRVLDHLEKTGGHPAALRHRQKTAAV
>Mature_372_residues
MNMHHQEQITEIAINDSTVRKILVCQLRQIGDVVLATPAIELLARRFPYAEIHVLTEKRCAAMLENNPFVTTVWSIDKKE
LPDLIREIAFYRKVAAEKFDIVVAFQQLPRCRWVLAFSRAPVRLSYPPAWHSRWLFTHWHPLEPGYSARTKANVLKPLGI
AWQGEKPRIYLTDEEMDNAAHLLEQAGVAPRHQLITLDPTHRRATRRYPARHYGRVVADLYRRNPDIRFLLLFGPGEEQE
AMEVVRQAGCDGAFIIPQHILTLRQMAACMAHARMHLGNCSAPRHIAVAVDTPSMTVLGSTTSSWTFPSPEHDHIILGLD
CQHCNQDTCRRNDMACLEQLAPQVVTQRVLDHLEKTGGHPAALRHRQKTAAV

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=307, Percent_Identity=25.7328990228013, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 42367; Mature: 42367

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMHHQEQITEIAINDSTVRKILVCQLRQIGDVVLATPAIELLARRFPYAEIHVLTEKRC
CCCCHHHHHHHEEECHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCEEEEEHHHHH
AAMLENNPFVTTVWSIDKKELPDLIREIAFYRKVAAEKFDIVVAFQQLPRCRWVLAFSRA
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCEEEEEEECCC
PVRLSYPPAWHSRWLFTHWHPLEPGYSARTKANVLKPLGIAWQGEKPRIYLTDEEMDNAA
CEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEECCCCEEEECCCCCHHHH
HLLEQAGVAPRHQLITLDPTHRRATRRYPARHYGRVVADLYRRNPDIRFLLLFGPGEEQE
HHHHHCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH
AMEVVRQAGCDGAFIIPQHILTLRQMAACMAHARMHLGNCSAPRHIAVAVDTPSMTVLGS
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEC
TTSSWTFPSPEHDHIILGLDCQHCNQDTCRRNDMACLEQLAPQVVTQRVLDHLEKTGGHP
CCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AALRHRQKTAAV
HHHHHHHHHCCC
>Mature Secondary Structure
MNMHHQEQITEIAINDSTVRKILVCQLRQIGDVVLATPAIELLARRFPYAEIHVLTEKRC
CCCCHHHHHHHEEECHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHCCCCEEEEEHHHHH
AAMLENNPFVTTVWSIDKKELPDLIREIAFYRKVAAEKFDIVVAFQQLPRCRWVLAFSRA
HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCEEEEEEECCC
PVRLSYPPAWHSRWLFTHWHPLEPGYSARTKANVLKPLGIAWQGEKPRIYLTDEEMDNAA
CEEEECCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCEEEECCCCEEEECCCCCHHHH
HLLEQAGVAPRHQLITLDPTHRRATRRYPARHYGRVVADLYRRNPDIRFLLLFGPGEEQE
HHHHHCCCCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH
AMEVVRQAGCDGAFIIPQHILTLRQMAACMAHARMHLGNCSAPRHIAVAVDTPSMTVLGS
HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEC
TTSSWTFPSPEHDHIILGLDCQHCNQDTCRRNDMACLEQLAPQVVTQRVLDHLEKTGGHP
CCCCCCCCCCCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AALRHRQKTAAV
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Glycosyltransferases; Transferring other glycosyl groups [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA