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The map label for this gene is ydaL [H]

Identifier: 78356486

GI number: 78356486

Start: 1465656

End: 1466597

Strand: Reverse

Name: ydaL [H]

Synonym: Dde_1441

Alternate gene names: 78356486

Gene position: 1466597-1465656 (Counterclockwise)

Preceding gene: 78356488

Following gene: 78356478

Centisome position: 39.32

GC content: 57.75

Gene sequence:

>942_bases
ATGACCGACACATTTAACAATCCCTTTGCAGAAATTGACAACAACGAATTCCCCGAAGCAGAAAGGGAAGACCAGACTGC
AGGTACTGCTCCTGATGAAGAGCTGGACGACGCCGGACTTTTCGCACAGGCGTTGCAGGGACTCGAGCGTCCCGCAAAGG
ACAGAAATCAGGCTCCGCAGCAGGGCCGCAGAACCGCAGAACAGTCATCCGGCGGTATGCTGCTGGGAGAACATGAGGCT
TTCAGACGCGTGCAGAACAGAACGCCCCGCTCCGGCACGCAGGAGCGCAAGGACAAGGTGCAGCAGAAATCACGCGCGGC
AGTGACCAGACGCGCCGCTCAGCCGGTTTCGACTCCGGACGACGATGCCCTGTTCGGACAGGCAATGACGGGGGTTGCTC
CGCTTACTTCCCGCGGGCGCGAAGTAAACCCGGAAGCCGCCCTGAATGCCAAAACCACGCTGTCGTCCGACCCGCGCGCA
AGCCTGCAGGAATTTATGGAAGGCAAGGTGCAGTTCCAGATCGAATACACCGACGAATTCATTCAGGCGCATGTGCAGGG
GCTTGATCCCGTCGTTATGGGTAAAATGCGTGCGGGACACTACAGTCCCGAAGGTCATCTTGATCTGCACGGCCAGAACA
TCATCCAGTCGTATTCCGCCATGGTGCAGTTCATCCAGACAAGCTACACCAAAGGCAAGCGCTGTGTGCTGCTTATACCC
GGACGCGGAAAGAACAGCCCCGAAGGTTACGGCGTTCTGCGGGACAAAGTGCAGACATGGCTTACACGGGATCCGTTCAA
ACGGGTGGTACTGGCTTTCTGCACCGCCCAGCCCAAAGACGGCGGTGCCGGTGCCCTGTATGTGCTGCTGCGCAAATTCA
AAAAAAGCTCGGGGAAAATACACTGGAACCGCACCCCCAGCGATGCGGACCTGTTTCTGTAA

Upstream 100 bases:

>100_bases
TATAAAACTCCTGTAAGAACGGAAGATGAGAGTTGCAGTGATGCCGATTTAACCTTGACACCCCGTTCATCGGCGTCAAA
TATCTGCTGTGGAGAATAGC

Downstream 100 bases:

>100_bases
CACCCTGCGTTTTTCTGCCTGCTGCACGCCGCAAAGGCGCCTTGCATGCAGCCTGCCTCATTCTGTCTGTCCGGTCTGCC
GGATTATTCTGCGCATCCCA

Product: Smr protein/MutS2-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MTDTFNNPFAEIDNNEFPEAEREDQTAGTAPDEELDDAGLFAQALQGLERPAKDRNQAPQQGRRTAEQSSGGMLLGEHEA
FRRVQNRTPRSGTQERKDKVQQKSRAAVTRRAAQPVSTPDDDALFGQAMTGVAPLTSRGREVNPEAALNAKTTLSSDPRA
SLQEFMEGKVQFQIEYTDEFIQAHVQGLDPVVMGKMRAGHYSPEGHLDLHGQNIIQSYSAMVQFIQTSYTKGKRCVLLIP
GRGKNSPEGYGVLRDKVQTWLTRDPFKRVVLAFCTAQPKDGGAGALYVLLRKFKKSSGKIHWNRTPSDADLFL

Sequences:

>Translated_313_residues
MTDTFNNPFAEIDNNEFPEAEREDQTAGTAPDEELDDAGLFAQALQGLERPAKDRNQAPQQGRRTAEQSSGGMLLGEHEA
FRRVQNRTPRSGTQERKDKVQQKSRAAVTRRAAQPVSTPDDDALFGQAMTGVAPLTSRGREVNPEAALNAKTTLSSDPRA
SLQEFMEGKVQFQIEYTDEFIQAHVQGLDPVVMGKMRAGHYSPEGHLDLHGQNIIQSYSAMVQFIQTSYTKGKRCVLLIP
GRGKNSPEGYGVLRDKVQTWLTRDPFKRVVLAFCTAQPKDGGAGALYVLLRKFKKSSGKIHWNRTPSDADLFL
>Mature_312_residues
TDTFNNPFAEIDNNEFPEAEREDQTAGTAPDEELDDAGLFAQALQGLERPAKDRNQAPQQGRRTAEQSSGGMLLGEHEAF
RRVQNRTPRSGTQERKDKVQQKSRAAVTRRAAQPVSTPDDDALFGQAMTGVAPLTSRGREVNPEAALNAKTTLSSDPRAS
LQEFMEGKVQFQIEYTDEFIQAHVQGLDPVVMGKMRAGHYSPEGHLDLHGQNIIQSYSAMVQFIQTSYTKGKRCVLLIPG
RGKNSPEGYGVLRDKVQTWLTRDPFKRVVLAFCTAQPKDGGAGALYVLLRKFKKSSGKIHWNRTPSDADLFL

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=185, Percent_Identity=31.8918918918919, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 34692; Mature: 34561

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTFNNPFAEIDNNEFPEAEREDQTAGTAPDEELDDAGLFAQALQGLERPAKDRNQAPQ
CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHH
QGRRTAEQSSGGMLLGEHEAFRRVQNRTPRSGTQERKDKVQQKSRAAVTRRAAQPVSTPD
HHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DDALFGQAMTGVAPLTSRGREVNPEAALNAKTTLSSDPRASLQEFMEGKVQFQIEYTDEF
CHHHHHHHHHCCCHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEEHHHHH
IQAHVQGLDPVVMGKMRAGHYSPEGHLDLHGQNIIQSYSAMVQFIQTSYTKGKRCVLLIP
HHHHHHCCCHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GRGKNSPEGYGVLRDKVQTWLTRDPFKRVVLAFCTAQPKDGGAGALYVLLRKFKKSSGKI
CCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCE
HWNRTPSDADLFL
EECCCCCCCCCCC
>Mature Secondary Structure 
TDTFNNPFAEIDNNEFPEAEREDQTAGTAPDEELDDAGLFAQALQGLERPAKDRNQAPQ
CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCHH
QGRRTAEQSSGGMLLGEHEAFRRVQNRTPRSGTQERKDKVQQKSRAAVTRRAAQPVSTPD
HHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DDALFGQAMTGVAPLTSRGREVNPEAALNAKTTLSSDPRASLQEFMEGKVQFQIEYTDEF
CHHHHHHHHHCCCHHHHCCCCCCCHHHCCCCCCCCCCCHHHHHHHHCCCEEEEEEHHHHH
IQAHVQGLDPVVMGKMRAGHYSPEGHLDLHGQNIIQSYSAMVQFIQTSYTKGKRCVLLIP
HHHHHHCCCHHHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GRGKNSPEGYGVLRDKVQTWLTRDPFKRVVLAFCTAQPKDGGAGALYVLLRKFKKSSGKI
CCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCE
HWNRTPSDADLFL
EECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]