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The map label for this gene is rpfG [H]

Identifier: 78356436

GI number: 78356436

Start: 1408553

End: 1409815

Strand: Direct

Name: rpfG [H]

Synonym: Dde_1391

Alternate gene names: 78356436

Gene position: 1408553-1409815 (Clockwise)

Preceding gene: 78356435

Following gene: 78356437

Centisome position: 37.76

GC content: 60.57

Gene sequence:

>1263_bases
ATGGATTGTGGAATTCGGGTCGGGCTTTTTCCTTTGGTGGGGGCACTGGCCAGAGCGCTGGACCTTGTCAGCAGAGAGGT
CTCGCACCATCACGCCCGTGTGGCCTGTCTGACGGACAGCATTGCGCTGGAGCTGCGGCTGCCCGCTGCAGAACGACGCA
ACCTGCTGCTGGCGGCACTGCTGCACGATGCCGGTGCGCTTTCTTTGCAGGGCAGGCTTGATGCGCTGCAGTTCGAGACC
GATGGAGTGACGCACGCCCGTGCCGGGTATGCGCTGCTGGGCATTTGTCCGCAGCTGCGTGACGTGGCGGAGCTGGTGCT
GCATCATCACACCGGCTATCAGGTGCTTGCGCGCAACATAGGCAGGGCGCCCATGCTGGCCAATGTTATCAACCTGGCTG
ACAGGCTGGATGTTTCTCTGCCCCGCAGCGGCGGGCAGGCGGTTGATATCTGCGCCACGGCGCGTGGTATGCGCCGGTAC
GCGGGTTCTCTTTTTCATCCTGACTATGTGGAGGCCCTGTGCCGCGCCGTGGAAACGGGCGTCGCGCAGGAGTGTTTCAC
CACGCCCTGGGGAGTGCTGGGCCGCCTTGACCCGGACATGATGGGTGAGACGCTTGACAGCGACGGGCTGTTCGATTTCG
CCTCTGTATTTTCTCAGGTCATTGACTTCCGGAGCAGGTTCACCGCCACCCATTCCAGCGGTGTGGCCGCGTGTGCGGCC
AAGCTGGGACAGCTGGCAGGTTTTTCACACTCCGAACAGGCGCAGCTGTATCTTGCCGGTCTGCTGCATGACGTGGGCAA
ACTGGCCATCAGCAGCGAACTGCTGGAAAAACCGGGTCCCCTGACGGAAGAAGAATTTGCACGGATGAAACGTCATCCGG
AATATACCGCCGAGGTGCTGGGTGAAGTGCCGGGCCTTGAAAGGGTGAGCCACTGGGCTTCTCATCATCACGAGCGTGTC
AACGGCAGCGGATATCCATACGGGCGCAAGGGAGGCGAGCTTGAACTGGGAGCGCGCATCATGGCTGTGGCGGATATTTT
TACCGCTTTGTCCGAAGACAGACCATACCGCAGCGGCATGACGCGTGAACAGGCGCACGGTGTGCTGACGGCTTTGTGCA
ACGAGGATGCGCTGGACCCGGTGGTGGCCAACCTGCTGTTCACCCATTACGATGAACTGGACGATGTAAGACTGACAGCC
CAGAGCAAGGCTTTGAAGGAATTCAGAGCGTTTGCCGCCAGACTGGATGATGCGGATCAATAA

Upstream 100 bases:

>100_bases
GCCAAGCTGCGGGGAGACAAGGCCGACTGCGGAACGTAATCTGAACGTCTCATACGGCGGGGGGGACATATCTTGCCGGT
ATGAGCTTGTGAGACTGATA

Downstream 100 bases:

>100_bases
ACTGCAACCCTTAACAGAACGGAACGGAAGATGACAGTGTTCGGCAGATTCGGCGCGGTGTGCCGCATGGTTAAAATTGA
ACATTCCGTATTTGCACTGC

Product: metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MDCGIRVGLFPLVGALARALDLVSREVSHHHARVACLTDSIALELRLPAAERRNLLLAALLHDAGALSLQGRLDALQFET
DGVTHARAGYALLGICPQLRDVAELVLHHHTGYQVLARNIGRAPMLANVINLADRLDVSLPRSGGQAVDICATARGMRRY
AGSLFHPDYVEALCRAVETGVAQECFTTPWGVLGRLDPDMMGETLDSDGLFDFASVFSQVIDFRSRFTATHSSGVAACAA
KLGQLAGFSHSEQAQLYLAGLLHDVGKLAISSELLEKPGPLTEEEFARMKRHPEYTAEVLGEVPGLERVSHWASHHHERV
NGSGYPYGRKGGELELGARIMAVADIFTALSEDRPYRSGMTREQAHGVLTALCNEDALDPVVANLLFTHYDELDDVRLTA
QSKALKEFRAFAARLDDADQ

Sequences:

>Translated_420_residues
MDCGIRVGLFPLVGALARALDLVSREVSHHHARVACLTDSIALELRLPAAERRNLLLAALLHDAGALSLQGRLDALQFET
DGVTHARAGYALLGICPQLRDVAELVLHHHTGYQVLARNIGRAPMLANVINLADRLDVSLPRSGGQAVDICATARGMRRY
AGSLFHPDYVEALCRAVETGVAQECFTTPWGVLGRLDPDMMGETLDSDGLFDFASVFSQVIDFRSRFTATHSSGVAACAA
KLGQLAGFSHSEQAQLYLAGLLHDVGKLAISSELLEKPGPLTEEEFARMKRHPEYTAEVLGEVPGLERVSHWASHHHERV
NGSGYPYGRKGGELELGARIMAVADIFTALSEDRPYRSGMTREQAHGVLTALCNEDALDPVVANLLFTHYDELDDVRLTA
QSKALKEFRAFAARLDDADQ
>Mature_420_residues
MDCGIRVGLFPLVGALARALDLVSREVSHHHARVACLTDSIALELRLPAAERRNLLLAALLHDAGALSLQGRLDALQFET
DGVTHARAGYALLGICPQLRDVAELVLHHHTGYQVLARNIGRAPMLANVINLADRLDVSLPRSGGQAVDICATARGMRRY
AGSLFHPDYVEALCRAVETGVAQECFTTPWGVLGRLDPDMMGETLDSDGLFDFASVFSQVIDFRSRFTATHSSGVAACAA
KLGQLAGFSHSEQAQLYLAGLLHDVGKLAISSELLEKPGPLTEEEFARMKRHPEYTAEVLGEVPGLERVSHWASHHHERV
NGSGYPYGRKGGELELGARIMAVADIFTALSEDRPYRSGMTREQAHGVLTALCNEDALDPVVANLLFTHYDELDDVRLTA
QSKALKEFRAFAARLDDADQ

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 45690; Mature: 45690

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDCGIRVGLFPLVGALARALDLVSREVSHHHARVACLTDSIALELRLPAAERRNLLLAAL
CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEECCHHHHHHHHHHHH
LHDAGALSLQGRLDALQFETDGVTHARAGYALLGICPQLRDVAELVLHHHTGYQVLARNI
HHCCCCEEECCCCHHEEEECCCCCHHHCCHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHC
GRAPMLANVINLADRLDVSLPRSGGQAVDICATARGMRRYAGSLFHPDYVEALCRAVETG
CCCHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VAQECFTTPWGVLGRLDPDMMGETLDSDGLFDFASVFSQVIDFRSRFTATHSSGVAACAA
HHHHHHCCCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KLGQLAGFSHSEQAQLYLAGLLHDVGKLAISSELLEKPGPLTEEEFARMKRHPEYTAEVL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH
GEVPGLERVSHWASHHHERVNGSGYPYGRKGGELELGARIMAVADIFTALSEDRPYRSGM
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCC
TREQAHGVLTALCNEDALDPVVANLLFTHYDELDDVRLTAQSKALKEFRAFAARLDDADQ
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDCGIRVGLFPLVGALARALDLVSREVSHHHARVACLTDSIALELRLPAAERRNLLLAAL
CCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCEEEEEECCHHHHHHHHHHHH
LHDAGALSLQGRLDALQFETDGVTHARAGYALLGICPQLRDVAELVLHHHTGYQVLARNI
HHCCCCEEECCCCHHEEEECCCCCHHHCCHHHHHHCHHHHHHHHHHHHCCCCHHHHHHHC
GRAPMLANVINLADRLDVSLPRSGGQAVDICATARGMRRYAGSLFHPDYVEALCRAVETG
CCCHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
VAQECFTTPWGVLGRLDPDMMGETLDSDGLFDFASVFSQVIDFRSRFTATHSSGVAACAA
HHHHHHCCCHHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
KLGQLAGFSHSEQAQLYLAGLLHDVGKLAISSELLEKPGPLTEEEFARMKRHPEYTAEVL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHH
GEVPGLERVSHWASHHHERVNGSGYPYGRKGGELELGARIMAVADIFTALSEDRPYRSGM
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCC
TREQAHGVLTALCNEDALDPVVANLLFTHYDELDDVRLTAQSKALKEFRAFAARLDDADQ
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]