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The map label for this gene is rlpA [H]

Identifier: 78355566

GI number: 78355566

Start: 526929

End: 527669

Strand: Reverse

Name: rlpA [H]

Synonym: Dde_0519

Alternate gene names: 78355566

Gene position: 527669-526929 (Counterclockwise)

Preceding gene: 78355567

Following gene: 78355565

Centisome position: 14.15

GC content: 58.43

Gene sequence:

>741_bases
ATGCACCATCCGGCACTGCAACGCCGTACCGCCAGAATCATACTGCTGCTCATGCTCGCTGCATTACTGTCTCTTGCCGG
CGGCTGCGGCAAAAAAGTTCTGGACACCTCACCCCGTCCGGCACCTAAAGGCCCCGTAAAATCGCACACCTATACCATTG
ACGGCAAATCATACACCACCATGACATCCGCTCACGGCTACACCGAAGAAGGGCTGGCGTCATGGTACGGTAAAGATTTT
CACGGCAGGCGCACGGCCAACGGCGAAGTCTATGACATGTACGGCATGACCGCCGCGCACAAACTGCTGCCCTTCGGCAC
GCGGCTGCGCGTGACCAACCTTGAAAACGGCAAAGCCATCAACGTGGTGGTCAACGACCGCGGTCCCTTTGTGAAAGACC
GCATCATCGACCTTACCTACACGGGCGCGCAGCGTCTCGACATGGTGGGTCCGGGCATTGCACGGGTGCGCATCGAATCG
CTGGAAGACGTGCCCACATACACCAACGGCGAAATGAGCGGACGCTTCTATGTGCAGGTAGGCGCTTTTGCCAAGCGCGA
AAACGCCGAAAGCCTGAGCAGCCGCATGAAGGCCGAAGGCAAACCGGCACGGCTGGTCTATGCCGATGATATCGGCTTCT
GGCGGGTGCAGGTCGGTGTGTATTCCAAACTGTCCAATGCCGAAGCCGTGCGTGAATCCATGCGCCGCGAATTCCCCAAC
AGCTTTATTGTGGCGGACTGA

Upstream 100 bases:

>100_bases
GCAGCGTACTACAAACAATGTGATGTTTTTTGTTTTTCCGGCCGCACCGCATGCCGACTGCGCTGTACCGCGCGGCCCGA
CCACTACAGGAGGATATGGA

Downstream 100 bases:

>100_bases
CCGCCGCAGCATGCCGCACACGGGGGAAGCCTTCCGCAGGAGGGCTTCCCTTTTTATATGCCGCAGCCATTGTTAATTAT
TTAAAAACGCGTATCATGAT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MHHPALQRRTARIILLLMLAALLSLAGGCGKKVLDTSPRPAPKGPVKSHTYTIDGKSYTTMTSAHGYTEEGLASWYGKDF
HGRRTANGEVYDMYGMTAAHKLLPFGTRLRVTNLENGKAINVVVNDRGPFVKDRIIDLTYTGAQRLDMVGPGIARVRIES
LEDVPTYTNGEMSGRFYVQVGAFAKRENAESLSSRMKAEGKPARLVYADDIGFWRVQVGVYSKLSNAEAVRESMRREFPN
SFIVAD

Sequences:

>Translated_246_residues
MHHPALQRRTARIILLLMLAALLSLAGGCGKKVLDTSPRPAPKGPVKSHTYTIDGKSYTTMTSAHGYTEEGLASWYGKDF
HGRRTANGEVYDMYGMTAAHKLLPFGTRLRVTNLENGKAINVVVNDRGPFVKDRIIDLTYTGAQRLDMVGPGIARVRIES
LEDVPTYTNGEMSGRFYVQVGAFAKRENAESLSSRMKAEGKPARLVYADDIGFWRVQVGVYSKLSNAEAVRESMRREFPN
SFIVAD
>Mature_246_residues
MHHPALQRRTARIILLLMLAALLSLAGGCGKKVLDTSPRPAPKGPVKSHTYTIDGKSYTTMTSAHGYTEEGLASWYGKDF
HGRRTANGEVYDMYGMTAAHKLLPFGTRLRVTNLENGKAINVVVNDRGPFVKDRIIDLTYTGAQRLDMVGPGIARVRIES
LEDVPTYTNGEMSGRFYVQVGAFAKRENAESLSSRMKAEGKPARLVYADDIGFWRVQVGVYSKLSNAEAVRESMRREFPN
SFIVAD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=136, Percent_Identity=36.0294117647059, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 27233; Mature: 27233

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHPALQRRTARIILLLMLAALLSLAGGCGKKVLDTSPRPAPKGPVKSHTYTIDGKSYTT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCEEE
MTSAHGYTEEGLASWYGKDFHGRRTANGEVYDMYGMTAAHKLLPFGTRLRVTNLENGKAI
EECCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCEEEEEECCCCCEE
NVVVNDRGPFVKDRIIDLTYTGAQRLDMVGPGIARVRIESLEDVPTYTNGEMSGRFYVQV
EEEECCCCCCCHHEEEEEEECCCHHHHHCCCCCEEEEEECHHCCCCCCCCCCCCEEEEEE
GAFAKRENAESLSSRMKAEGKPARLVYADDIGFWRVQVGVYSKLSNAEAVRESMRREFPN
CCHHHHCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEHHHHHCCHHHHHHHHHHHCCC
SFIVAD
CEEECC
>Mature Secondary Structure
MHHPALQRRTARIILLLMLAALLSLAGGCGKKVLDTSPRPAPKGPVKSHTYTIDGKSYTT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCEEE
MTSAHGYTEEGLASWYGKDFHGRRTANGEVYDMYGMTAAHKLLPFGTRLRVTNLENGKAI
EECCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHCCCCCEEEEEECCCCCEE
NVVVNDRGPFVKDRIIDLTYTGAQRLDMVGPGIARVRIESLEDVPTYTNGEMSGRFYVQV
EEEECCCCCCCHHEEEEEEECCCHHHHHCCCCCEEEEEECHHCCCCCCCCCCCCEEEEEE
GAFAKRENAESLSSRMKAEGKPARLVYADDIGFWRVQVGVYSKLSNAEAVRESMRREFPN
CCHHHHCCHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEHHHHHCCHHHHHHHHHHHCCC
SFIVAD
CEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]