| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is purH [H]
Identifier: 78355424
GI number: 78355424
Start: 372342
End: 373100
Strand: Reverse
Name: purH [H]
Synonym: Dde_0377
Alternate gene names: 78355424
Gene position: 373100-372342 (Counterclockwise)
Preceding gene: 78355439
Following gene: 78355423
Centisome position: 10.0
GC content: 60.08
Gene sequence:
>759_bases ATGCCGCGTACGGCCTTTTGGCAAAGGCGGCAGGGCAAGGCCGTGTCAGCCTTTCGACGGCACCGGCACAAACACGTTGC CCCTGCCGTCAGGTGCGGATACTGTTGCCAAGGGCCGATGTTTCTGGCACTGCCTCAAAAAACCGAATACGGAGGCGATA TGGATTTTCTGCCCATACGGCGAGCGCTGCTGAGCGTGACCGACAAAAGCGGGCTTGTGGAATTTGCCACGTTTCTCACA CAGAACGGCGTGGAACTGGTTTCCACCGGCGGCACCCAGCGGACGCTGACCGAAGCGGGACTGGACGTCACCCCTGTGAG CAAGGTCACCGGCTTTCCTGAAATAATGGGCGGCCGCGTCAAGACCCTGCACCCGCACATCCACGGCGGCATTCTGGCCG ACAAGGACAACCCCGAACACCTTGCCACTCTCAAGGAGCTGGGAATCCGCACGTTCGACCTCATCTGTGTCAACCTTTAC AACTTTGCGGATGCCGCCGCCCGCGGTCTTGACCTGCGCGGTGCCGTGGAGGAAGTGGACATCGGCGGGCCGTGCATGCT GCGCGCCACCGCCAAAAACTTCCATTCCATGCTTGTACTGCCCGACCCTGCCGATTATCAGGCAGCTATGCAGGAAATGC GCGACAACGACATGCGGGTGGGACTTGCCATGCGTCAGGCCATGGCTGTCAAAACATTCCGCGCCACTTCCGCCTATGAC GGCATGATTGCCGACTATCTGGGCAGCAAAACGGCTTAA
Upstream 100 bases:
>100_bases AGAGGCTTCATCAAAATTGAAGAGATCCATGCCGTCTCAAAAAGCAAAAAACAGACCATCGCACCGCAGCCGGACGCAAA AGCCCGCGCAAGGCCGGTAA
Downstream 100 bases:
>100_bases ACGCCGGACGGAGACCCGCCATAGCAACCAAGGTTCTCGGCAATACCCAGGGGCTGAAGCCCAGTCAGGTCAAGGCGCTT TCGCGTCTGTACACACGCCG
Product: phosphoribosylaminoimidazolecarboxamide formyltransferase
Products: NA
Alternate protein names: Phosphoribosylaminoimidazolecarboxamide formyltransferase; AICAR transformylase; IMP cyclohydrolase; ATIC; IMP synthase; Inosinicase [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MPRTAFWQRRQGKAVSAFRRHRHKHVAPAVRCGYCCQGPMFLALPQKTEYGGDMDFLPIRRALLSVTDKSGLVEFATFLT QNGVELVSTGGTQRTLTEAGLDVTPVSKVTGFPEIMGGRVKTLHPHIHGGILADKDNPEHLATLKELGIRTFDLICVNLY NFADAAARGLDLRGAVEEVDIGGPCMLRATAKNFHSMLVLPDPADYQAAMQEMRDNDMRVGLAMRQAMAVKTFRATSAYD GMIADYLGSKTA
Sequences:
>Translated_252_residues MPRTAFWQRRQGKAVSAFRRHRHKHVAPAVRCGYCCQGPMFLALPQKTEYGGDMDFLPIRRALLSVTDKSGLVEFATFLT QNGVELVSTGGTQRTLTEAGLDVTPVSKVTGFPEIMGGRVKTLHPHIHGGILADKDNPEHLATLKELGIRTFDLICVNLY NFADAAARGLDLRGAVEEVDIGGPCMLRATAKNFHSMLVLPDPADYQAAMQEMRDNDMRVGLAMRQAMAVKTFRATSAYD GMIADYLGSKTA >Mature_251_residues PRTAFWQRRQGKAVSAFRRHRHKHVAPAVRCGYCCQGPMFLALPQKTEYGGDMDFLPIRRALLSVTDKSGLVEFATFLTQ NGVELVSTGGTQRTLTEAGLDVTPVSKVTGFPEIMGGRVKTLHPHIHGGILADKDNPEHLATLKELGIRTFDLICVNLYN FADAAARGLDLRGAVEEVDIGGPCMLRATAKNFHSMLVLPDPADYQAAMQEMRDNDMRVGLAMRQAMAVKTFRATSAYDG MIADYLGSKTA
Specific function: De novo purine biosynthesis; ninth step. De novo purine biosynthesis; tenth step. [C]
COG id: COG0138
COG function: function code F; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purH family [H]
Homologues:
Organism=Homo sapiens, GI20127454, Length=192, Percent_Identity=45.3125, Blast_Score=159, Evalue=3e-39, Organism=Escherichia coli, GI1790439, Length=193, Percent_Identity=53.3678756476684, Blast_Score=200, Evalue=8e-53, Organism=Caenorhabditis elegans, GI71985564, Length=187, Percent_Identity=39.572192513369, Blast_Score=138, Evalue=3e-33, Organism=Saccharomyces cerevisiae, GI6323768, Length=190, Percent_Identity=42.6315789473684, Blast_Score=150, Evalue=2e-37, Organism=Saccharomyces cerevisiae, GI6323056, Length=189, Percent_Identity=41.7989417989418, Blast_Score=147, Evalue=1e-36, Organism=Drosophila melanogaster, GI24649832, Length=187, Percent_Identity=42.7807486631016, Blast_Score=144, Evalue=4e-35,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002695 - InterPro: IPR013982 - InterPro: IPR016193 - InterPro: IPR011607 [H]
Pfam domain/function: PF01808 AICARFT_IMPCHas; PF02142 MGS [H]
EC number: =2.1.2.3; =3.5.4.10 [H]
Molecular weight: Translated: 27628; Mature: 27497
Theoretical pI: Translated: 8.73; Mature: 8.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRTAFWQRRQGKAVSAFRRHRHKHVAPAVRCGYCCQGPMFLALPQKTEYGGDMDFLPIR CCCCHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHH RALLSVTDKSGLVEFATFLTQNGVELVSTGGTQRTLTEAGLDVTPVSKVTGFPEIMGGRV HHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHCCCHHHHCCCE KTLHPHIHGGILADKDNPEHLATLKELGIRTFDLICVNLYNFADAAARGLDLRGAVEEVD EEECCCCCCCEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC IGGPCMLRATAKNFHSMLVLPDPADYQAAMQEMRDNDMRVGLAMRQAMAVKTFRATSAYD CCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHC GMIADYLGSKTA CHHHHHHCCCCC >Mature Secondary Structure PRTAFWQRRQGKAVSAFRRHRHKHVAPAVRCGYCCQGPMFLALPQKTEYGGDMDFLPIR CCCHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHHH RALLSVTDKSGLVEFATFLTQNGVELVSTGGTQRTLTEAGLDVTPVSKVTGFPEIMGGRV HHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHCCCCCCCHHHHCCCHHHHCCCE KTLHPHIHGGILADKDNPEHLATLKELGIRTFDLICVNLYNFADAAARGLDLRGAVEEVD EEECCCCCCCEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC IGGPCMLRATAKNFHSMLVLPDPADYQAAMQEMRDNDMRVGLAMRQAMAVKTFRATSAYD CCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHC GMIADYLGSKTA CHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA