Click here to switch to the map view.

The map label for this gene is 78355084

Identifier: 78355084

GI number: 78355084

Start: 28946

End: 30304

Strand: Reverse

Name: 78355084

Synonym: Dde_0037

Alternate gene names: NA

Gene position: 30304-28946 (Counterclockwise)

Preceding gene: 78355085

Following gene: 78355083

Centisome position: 0.81

GC content: 57.98

Gene sequence:

>1359_bases
ATGAACACGTCTCATGCTCTGTATCGCAAAATAACGGCCATTTGCGCCACATTATGCTTTTTCGCAGCCTTTCACCCTGC
CATGCCAGCTTCCGGAGCTGAAAATGCCGTGCAGAAACACACTGTTTCTGTGGTGCATGTAACGATAAAGGCGGGCATCG
GTCCTGCCACGGCTGACCTTTTACGCGGAGCCATCAAACAGGCCGAAAGCGGCAGCGACATGGTACTGGTGACGCTGGAC
ACGCCCGGCGGCCTTGTATCTTCCATGCGCGAAATGGTGCAGGACATTCTGAATGCGGATGTACCCGTGGGAGTATGGGT
CGGTCCTTCCGGAGCACATGCAGCCAGTGCGGGGGTGTTTATTGTGGCGGCTTCCAGCATCAGCGGCATGGCCCCGCAGA
CAACCATGGGAGCGGCCATCCCCGTCACACCGGACGGAGCCGACACCAAAGGGGATATGGCCACAAAGGTAAAAAACGAC
CTGTCCAGCCTTGTGTCCGGTCTGGCAGAACGGCGCAACCGCAATGTGGACTGGTATGTTTCGGCAGTTAGGGAAGGCAA
AAGCCTGCCTGCCTCACAGGCAATAATGAACAATGTTGTTGAGTTTATGGCCACCACCCCCGAAGACTTTCTTGTACAGG
CGGGCAGCAGGGGTGTACCGGCAGGCATGGGGACATTGCGGTTCACCGCCGACGACATACGCATTATCCCTTACGAGCCA
GGTTTGCGGTACCGCTTTCTGGGCTGGTTGCTCGACCCGCAGGTGGCGTATCTGCTGCTGCTTGCCGGTGTGGCTCTGCT
TTTTGTCGAATTTACCCATGCAGGAGCCATACTGCCCGGAGTGCTCGGAGCGCTCTCACTGCTGTTGGGGCTGTATGCCA
TGACCATACTCCCCACGGCGGCGGCGGGCCTGCTTCTTATTCTTCTGGGGCTTGTCCTCTTTCTGCTGGAAATCAAAGTG
GTCAGTTTCGGCCTGCTTTCACTGGCCGGTGTGGCCGCGCTGTTCATCGGCTCGCTCATACTCTTTCCCGAAAGTGAAGG
GCTGCGCCTGCCCATGATGACCATCGGCCCCACCGTACTGGGCATAAGCGCCTTCATGGGCGGTCTGGTATGGCTTGCGG
TCAAGGCGCAGCGCAGCAAATCCGCAATGGCTTCAGATCAGCTGGCAGGACAACAGGCCATGGTCATGCGCTGGCAGGGC
CGCAAAGGAACCGTAAAACTGCACGGCACCCTGTGGAATGCCGTAACCAGAGAAGAACAACCCATCGCCAAAGGCGAGAC
AGTCACAGTTACCGGTGCAAAGGGGCTGACACTCCATGTGTCGACGCATCCGGCACCGGAGGATGCTGTGCAGGAATAG

Upstream 100 bases:

>100_bases
GCGCCCCGCATCTCCGAAAAAACTGTTCACAGAATATGCTTTACTGTACACTGACTCCGGATCCTCTTTTTTCATGCCCG
CCTGTCCACGGAGGAACACG

Downstream 100 bases:

>100_bases
CAACCAAAACCGCAAGTACCGGACAGCCGGTACCCGCCCGACAGGAGACTTCATCATGCTTGCCTATCTGCCTATTATCG
TAGCGGTCATAGCGTTTTTC

Product: nodulation efficiency protein NfeD

Products: NA

Alternate protein names: Membrane-Bound Serine Protease; Nodulation Protein NfeD; Nodulation Efficiency Protein D; Nodulation Competitiveness Protein NfeD; NfeD Protein; Membrane Bound Peptidase; Transmembrane Protein; NfeD Family Protein; Serine Protease; NfeD-Like Family; Protease/Transporter; Membrane-Bound Serine Protease-Like Protein; Membrane-Bound ClpP-Class Protease; Nodulation Efficiency Family Protein; Membrane-Bound Serine Protease ClpP Class; S49 Family Serine Protease; Membrane-Bound Serine Protease NfeD-Like Protein; NfeD Nodulation Like Protein Membrane Protein; Nodulation Efficiency Protein Nfed; NfeD-Like Membrane-Bound Serine Protease; Nfed Family Protein; Nodulation Protein; Membrane-Bound Protease; Nodulation Protein Nfed; Membrane-Bound Serine Protease Protein

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MNTSHALYRKITAICATLCFFAAFHPAMPASGAENAVQKHTVSVVHVTIKAGIGPATADLLRGAIKQAESGSDMVLVTLD
TPGGLVSSMREMVQDILNADVPVGVWVGPSGAHAASAGVFIVAASSISGMAPQTTMGAAIPVTPDGADTKGDMATKVKND
LSSLVSGLAERRNRNVDWYVSAVREGKSLPASQAIMNNVVEFMATTPEDFLVQAGSRGVPAGMGTLRFTADDIRIIPYEP
GLRYRFLGWLLDPQVAYLLLLAGVALLFVEFTHAGAILPGVLGALSLLLGLYAMTILPTAAAGLLLILLGLVLFLLEIKV
VSFGLLSLAGVAALFIGSLILFPESEGLRLPMMTIGPTVLGISAFMGGLVWLAVKAQRSKSAMASDQLAGQQAMVMRWQG
RKGTVKLHGTLWNAVTREEQPIAKGETVTVTGAKGLTLHVSTHPAPEDAVQE

Sequences:

>Translated_452_residues
MNTSHALYRKITAICATLCFFAAFHPAMPASGAENAVQKHTVSVVHVTIKAGIGPATADLLRGAIKQAESGSDMVLVTLD
TPGGLVSSMREMVQDILNADVPVGVWVGPSGAHAASAGVFIVAASSISGMAPQTTMGAAIPVTPDGADTKGDMATKVKND
LSSLVSGLAERRNRNVDWYVSAVREGKSLPASQAIMNNVVEFMATTPEDFLVQAGSRGVPAGMGTLRFTADDIRIIPYEP
GLRYRFLGWLLDPQVAYLLLLAGVALLFVEFTHAGAILPGVLGALSLLLGLYAMTILPTAAAGLLLILLGLVLFLLEIKV
VSFGLLSLAGVAALFIGSLILFPESEGLRLPMMTIGPTVLGISAFMGGLVWLAVKAQRSKSAMASDQLAGQQAMVMRWQG
RKGTVKLHGTLWNAVTREEQPIAKGETVTVTGAKGLTLHVSTHPAPEDAVQE
>Mature_452_residues
MNTSHALYRKITAICATLCFFAAFHPAMPASGAENAVQKHTVSVVHVTIKAGIGPATADLLRGAIKQAESGSDMVLVTLD
TPGGLVSSMREMVQDILNADVPVGVWVGPSGAHAASAGVFIVAASSISGMAPQTTMGAAIPVTPDGADTKGDMATKVKND
LSSLVSGLAERRNRNVDWYVSAVREGKSLPASQAIMNNVVEFMATTPEDFLVQAGSRGVPAGMGTLRFTADDIRIIPYEP
GLRYRFLGWLLDPQVAYLLLLAGVALLFVEFTHAGAILPGVLGALSLLLGLYAMTILPTAAAGLLLILLGLVLFLLEIKV
VSFGLLSLAGVAALFIGSLILFPESEGLRLPMMTIGPTVLGISAFMGGLVWLAVKAQRSKSAMASDQLAGQQAMVMRWQG
RKGTVKLHGTLWNAVTREEQPIAKGETVTVTGAKGLTLHVSTHPAPEDAVQE

Specific function: Unknown

COG id: COG1030

COG function: function code O; Membrane-bound serine protease (ClpP class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47315; Mature: 47315

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSHALYRKITAICATLCFFAAFHPAMPASGAENAVQKHTVSVVHVTIKAGIGPATADL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEEEEECCCCHHHHHH
LRGAIKQAESGSDMVLVTLDTPGGLVSSMREMVQDILNADVPVGVWVGPSGAHAASAGVF
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEE
IVAASSISGMAPQTTMGAAIPVTPDGADTKGDMATKVKNDLSSLVSGLAERRNRNVDWYV
EEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SAVREGKSLPASQAIMNNVVEFMATTPEDFLVQAGSRGVPAGMGTLRFTADDIRIIPYEP
HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCC
GLRYRFLGWLLDPQVAYLLLLAGVALLFVEFTHAGAILPGVLGALSLLLGLYAMTILPTA
CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAGLLLILLGLVLFLLEIKVVSFGLLSLAGVAALFIGSLILFPESEGLRLPMMTIGPTVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECHHHHCHHHH
GISAFMGGLVWLAVKAQRSKSAMASDQLAGQQAMVMRWQGRKGTVKLHGTLWNAVTREEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHCCCC
PIAKGETVTVTGAKGLTLHVSTHPAPEDAVQE
CCCCCCEEEEECCCCEEEEEECCCCCHHHHCC
>Mature Secondary Structure
MNTSHALYRKITAICATLCFFAAFHPAMPASGAENAVQKHTVSVVHVTIKAGIGPATADL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEEEEEEECCCCHHHHHH
LRGAIKQAESGSDMVLVTLDTPGGLVSSMREMVQDILNADVPVGVWVGPSGAHAASAGVF
HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEE
IVAASSISGMAPQTTMGAAIPVTPDGADTKGDMATKVKNDLSSLVSGLAERRNRNVDWYV
EEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SAVREGKSLPASQAIMNNVVEFMATTPEDFLVQAGSRGVPAGMGTLRFTADDIRIIPYEP
HHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCEEEEECCCEEEEECCC
GLRYRFLGWLLDPQVAYLLLLAGVALLFVEFTHAGAILPGVLGALSLLLGLYAMTILPTA
CCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
AAGLLLILLGLVLFLLEIKVVSFGLLSLAGVAALFIGSLILFPESEGLRLPMMTIGPTVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEECHHHHCHHHH
GISAFMGGLVWLAVKAQRSKSAMASDQLAGQQAMVMRWQGRKGTVKLHGTLWNAVTREEQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEHHHHHHHCCCC
PIAKGETVTVTGAKGLTLHVSTHPAPEDAVQE
CCCCCCEEEEECCCCEEEEEECCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA