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The map label for this gene is ybbK [C]

Identifier: 78355083

GI number: 78355083

Start: 28150

End: 28962

Strand: Reverse

Name: ybbK [C]

Synonym: Dde_0036

Alternate gene names: 78355083

Gene position: 28962-28150 (Counterclockwise)

Preceding gene: 78355084

Following gene: 78355081

Centisome position: 0.78

GC content: 52.77

Gene sequence:

>813_bases
ATGCTGTGCAGGAATAGCAACCAAAACCGCAAGTACCGGACAGCCGGTACCCGCCCGACAGGAGACTTCATCATGCTTGC
CTATCTGCCTATTATCGTAGCGGTCATAGCGTTTTTCATTGTTTCAATCAAAATTCTCAACGAATACGAACGGGCCGTTG
TATTCCGTCTGGGCAGGGTCATCGGCGCCAAAGGTCCGGGCCTTTTCATTCTCATACCCATCATCGACAGTATGGTGCGC
GTCAGCAAACGTGTTCTTACGCTCGATGTACCCAATCAGGATGTCATCACCATGGACAACGTTTCCGTCGAAGTGAACGC
CGTTGTCTATTTTCGCGTGGTTGATCCGGTAAAGGCCATCATTGAAGTGGAAGATTATCTGTTTGCCACGTCGCAGCTGG
CCCAGACCACACTGCGCAGTGTGTGCGGCAGCGCGGAACTTGATGAACTGCTGTCGCAGCGTGAAGAAATAAATGAAAAA
ATCCAGCAACTGCTCGACGAACAGACAGACCCGTGGGGCATAAAGGTGCAGGCAGTGGAACTGAAACACATAGACCTGCC
CGCAGAAATGCAGCGCGCCATGGCAAAACAGGCCGAAGCTGAACGCGAACGCCGCGCCAAAGTCATTAACGCCGAAGGTG
AACAGCAGGCCGCAACTAAGCTGAAAGAAGCCGCCATAATTCTTGCGGAATCGCCCGCAGCGCTGCAGTTGCGCTACCTG
CAGACCATGCGGGAAATGGCTTCCGGCAGCACATCTACTGTCATCCCCATTCCCTTTGACCTGCTTAAGCCGTTTATGGA
CGGCAAAAAGTAA

Upstream 100 bases:

>100_bases
GTAACCAGAGAAGAACAACCCATCGCCAAAGGCGAGACAGTCACAGTTACCGGTGCAAAGGGGCTGACACTCCATGTGTC
GACGCATCCGGCACCGGAGG

Downstream 100 bases:

>100_bases
CCAGACTGCACAACACACACCGATAAAGGGGCCGCTAGGCCCCTTTTTGATTACTTCCGGCAGTCCCTGTTCTGATGACT
TTTTCATGCCTCCGGCGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLCRNSNQNRKYRTAGTRPTGDFIMLAYLPIIVAVIAFFIVSIKILNEYERAVVFRLGRVIGAKGPGLFILIPIIDSMVR
VSKRVLTLDVPNQDVITMDNVSVEVNAVVYFRVVDPVKAIIEVEDYLFATSQLAQTTLRSVCGSAELDELLSQREEINEK
IQQLLDEQTDPWGIKVQAVELKHIDLPAEMQRAMAKQAEAERERRAKVINAEGEQQAATKLKEAAIILAESPAALQLRYL
QTMREMASGSTSTVIPIPFDLLKPFMDGKK

Sequences:

>Translated_270_residues
MLCRNSNQNRKYRTAGTRPTGDFIMLAYLPIIVAVIAFFIVSIKILNEYERAVVFRLGRVIGAKGPGLFILIPIIDSMVR
VSKRVLTLDVPNQDVITMDNVSVEVNAVVYFRVVDPVKAIIEVEDYLFATSQLAQTTLRSVCGSAELDELLSQREEINEK
IQQLLDEQTDPWGIKVQAVELKHIDLPAEMQRAMAKQAEAERERRAKVINAEGEQQAATKLKEAAIILAESPAALQLRYL
QTMREMASGSTSTVIPIPFDLLKPFMDGKK
>Mature_270_residues
MLCRNSNQNRKYRTAGTRPTGDFIMLAYLPIIVAVIAFFIVSIKILNEYERAVVFRLGRVIGAKGPGLFILIPIIDSMVR
VSKRVLTLDVPNQDVITMDNVSVEVNAVVYFRVVDPVKAIIEVEDYLFATSQLAQTTLRSVCGSAELDELLSQREEINEK
IQQLLDEQTDPWGIKVQAVELKHIDLPAEMQRAMAKQAEAERERRAKVINAEGEQQAATKLKEAAIILAESPAALQLRYL
QTMREMASGSTSTVIPIPFDLLKPFMDGKK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=263, Percent_Identity=47.9087452471483, Blast_Score=222, Evalue=3e-58,
Organism=Homo sapiens, GI21686995, Length=241, Percent_Identity=48.1327800829876, Blast_Score=212, Evalue=3e-55,
Organism=Homo sapiens, GI221316744, Length=241, Percent_Identity=48.1327800829876, Blast_Score=212, Evalue=3e-55,
Organism=Homo sapiens, GI7657615, Length=256, Percent_Identity=36.71875, Blast_Score=162, Evalue=4e-40,
Organism=Homo sapiens, GI7305503, Length=195, Percent_Identity=38.4615384615385, Blast_Score=137, Evalue=8e-33,
Organism=Homo sapiens, GI20149563, Length=160, Percent_Identity=32.5, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI38016907, Length=65, Percent_Identity=50.7692307692308, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI1786697, Length=214, Percent_Identity=38.3177570093458, Blast_Score=144, Evalue=8e-36,
Organism=Caenorhabditis elegans, GI71987612, Length=247, Percent_Identity=51.0121457489879, Blast_Score=228, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI25153583, Length=247, Percent_Identity=51.0121457489879, Blast_Score=228, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI71987621, Length=245, Percent_Identity=51.4285714285714, Blast_Score=226, Evalue=7e-60,
Organism=Caenorhabditis elegans, GI17569493, Length=241, Percent_Identity=47.3029045643153, Blast_Score=220, Evalue=7e-58,
Organism=Caenorhabditis elegans, GI193209764, Length=241, Percent_Identity=47.3029045643153, Blast_Score=219, Evalue=9e-58,
Organism=Caenorhabditis elegans, GI17569499, Length=267, Percent_Identity=44.9438202247191, Blast_Score=209, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17569497, Length=262, Percent_Identity=43.5114503816794, Blast_Score=207, Evalue=3e-54,
Organism=Caenorhabditis elegans, GI17570459, Length=241, Percent_Identity=45.643153526971, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI17570161, Length=267, Percent_Identity=44.1947565543071, Blast_Score=205, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI193210507, Length=258, Percent_Identity=44.5736434108527, Blast_Score=204, Evalue=4e-53,
Organism=Caenorhabditis elegans, GI71989948, Length=232, Percent_Identity=47.8448275862069, Blast_Score=201, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI32566490, Length=244, Percent_Identity=46.3114754098361, Blast_Score=201, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=51.9125683060109, Blast_Score=171, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI32564147, Length=197, Percent_Identity=38.0710659898477, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI71989963, Length=122, Percent_Identity=53.2786885245902, Blast_Score=129, Evalue=1e-30,
Organism=Caenorhabditis elegans, GI17542664, Length=202, Percent_Identity=25.7425742574257, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI18860517, Length=271, Percent_Identity=47.6014760147601, Blast_Score=233, Evalue=1e-61,
Organism=Drosophila melanogaster, GI45556022, Length=250, Percent_Identity=48.8, Blast_Score=228, Evalue=4e-60,
Organism=Drosophila melanogaster, GI24657857, Length=250, Percent_Identity=49.2, Blast_Score=218, Evalue=2e-57,
Organism=Drosophila melanogaster, GI281365664, Length=250, Percent_Identity=49.2, Blast_Score=218, Evalue=3e-57,
Organism=Drosophila melanogaster, GI62484448, Length=250, Percent_Identity=49.2, Blast_Score=218, Evalue=4e-57,
Organism=Drosophila melanogaster, GI62484274, Length=250, Percent_Identity=49.2, Blast_Score=217, Evalue=7e-57,
Organism=Drosophila melanogaster, GI21356845, Length=247, Percent_Identity=40.8906882591093, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI28573263, Length=247, Percent_Identity=40.080971659919, Blast_Score=194, Evalue=8e-50,
Organism=Drosophila melanogaster, GI281361631, Length=245, Percent_Identity=40, Blast_Score=186, Evalue=9e-48,
Organism=Drosophila melanogaster, GI281361633, Length=245, Percent_Identity=40, Blast_Score=186, Evalue=1e-47,
Organism=Drosophila melanogaster, GI281361635, Length=182, Percent_Identity=43.4065934065934, Blast_Score=149, Evalue=2e-36,
Organism=Drosophila melanogaster, GI45550506, Length=176, Percent_Identity=39.7727272727273, Blast_Score=133, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 30218; Mature: 30218

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCRNSNQNRKYRTAGTRPTGDFIMLAYLPIIVAVIAFFIVSIKILNEYERAVVFRLGRV
CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGAKGPGLFILIPIIDSMVRVSKRVLTLDVPNQDVITMDNVSVEVNAVVYFRVVDPVKAI
HCCCCCCCEEEHHHHHHHHHHHHHEEEEECCCCCEEEECCCEEEEEEEEEEEEHHHHHHH
IEVEDYLFATSQLAQTTLRSVCGSAELDELLSQREEINEKIQQLLDEQTDPWGIKVQAVE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
LKHIDLPAEMQRAMAKQAEAERERRAKVINAEGEQQAATKLKEAAIILAESPAALQLRYL
EEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHEEEEECCCHHHHHHHH
QTMREMASGSTSTVIPIPFDLLKPFMDGKK
HHHHHHHCCCCCEEEECCHHHHHHHHCCCC
>Mature Secondary Structure
MLCRNSNQNRKYRTAGTRPTGDFIMLAYLPIIVAVIAFFIVSIKILNEYERAVVFRLGRV
CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGAKGPGLFILIPIIDSMVRVSKRVLTLDVPNQDVITMDNVSVEVNAVVYFRVVDPVKAI
HCCCCCCCEEEHHHHHHHHHHHHHEEEEECCCCCEEEECCCEEEEEEEEEEEEHHHHHHH
IEVEDYLFATSQLAQTTLRSVCGSAELDELLSQREEINEKIQQLLDEQTDPWGIKVQAVE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
LKHIDLPAEMQRAMAKQAEAERERRAKVINAEGEQQAATKLKEAAIILAESPAALQLRYL
EEECCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHEEEEECCCHHHHHHHH
QTMREMASGSTSTVIPIPFDLLKPFMDGKK
HHHHHHHCCCCCEEEECCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]