Click here to switch to the map view.

The map label for this gene is 78224452

Identifier: 78224452

GI number: 78224452

Start: 3670633

End: 3671427

Strand: Reverse

Name: 78224452

Synonym: Gmet_3261

Alternate gene names: NA

Gene position: 3671427-3670633 (Counterclockwise)

Preceding gene: 78224453

Following gene: 78224430

Centisome position: 91.84

GC content: 59.25

Gene sequence:

>795_bases
ATGCACGACGAAGCGCTGATCAGGCTCGCTTTTTTCTTCGGCGTGCTGGCGGCGGTTGCCATCTGGGAGGTGGCGGCTCC
GCGCCGACGGCTCACTGACAGCAAGGCACGGCGTTGGTACACCAATCTCTCCCTAGTAGCCATCGACACCGCGGTGGTAC
GCCTGACCCTTACCGTCCTCCCCGCTGACATGGCGGTACAGGCGCGCGAACACGGCTGGGGACTCATGAACACCGTCGTC
CTTCCGCCATCGGCCGGGATTCTTCTGGCCTTCATCGCCCTCGATCTGATTATTTACCTGCAGCATGTCCTTTTTCACTT
TCTTCCGGTGCTCTGGCGTCTCCACCGGATGCACCACACCGACCTTGACATCGACGTTACGACCGGCAACCGCTTTCACC
CGGTCGAGATTTTTCTCTCGGCCGGGATCAAGCTTGGGGCGGTTGCGCTGCTCGGAGCGCCCGTTGTGGCGGTGGTTGCC
TTCGAGGTGGCACTGAATGCTACCTCAATGTTCAATCATGGCAACATTCGGCTTCCTCTCACCTTTGACAGGTGGTTGCG
GCTCGTCGTCGTGACGCCGGACATGCACCGTGTCCACCATTCAATTATTCTTCGGGAAACTAACAGCAACTTCGGCTTTA
ATCTCCCCTGGTGGGACCGCCTGGCAGGCACCTATCGTCCACAGCCCGAAGGCGGCCATGGGGAAATGACGATCGGGCTT
AAGGAGTTCCGTGATCCGGCACAGCTGACCCTTTCCCGTCTTCTCGTTCAGCCGTTTGTGCGCAAATCGACTTGA

Upstream 100 bases:

>100_bases
TCAACGGCCCTTTCGCGTGATGCGAGGGGGCCTTTTTCGTGGTAAACATTCTCCGTAGCGCAGCATCGCTTTTGGGCAGG
ACAGGGGAGGGGATAAGGGC

Downstream 100 bases:

>100_bases
AGCGGTAGCTCTGTCGCGGTGAGGACATGCGAGCTGGACCATCACAGGAGGGAGGATAGTCTGGAGGGGGAAAGGGTTTG
GAGAAGCAGGCGATAAAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Sterol Desaturase; Sterol Desaturase-Related Protein; Sterol Desaturase-Like Protein; C-5 Sterol Desaturase; Sterol Desaturase -Like Protein; Sterol Desaturase Family Protein; Sterol Desaturate; Fatty Acid Hydroxylase Superfamily Protein

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MHDEALIRLAFFFGVLAAVAIWEVAAPRRRLTDSKARRWYTNLSLVAIDTAVVRLTLTVLPADMAVQAREHGWGLMNTVV
LPPSAGILLAFIALDLIIYLQHVLFHFLPVLWRLHRMHHTDLDIDVTTGNRFHPVEIFLSAGIKLGAVALLGAPVVAVVA
FEVALNATSMFNHGNIRLPLTFDRWLRLVVVTPDMHRVHHSIILRETNSNFGFNLPWWDRLAGTYRPQPEGGHGEMTIGL
KEFRDPAQLTLSRLLVQPFVRKST

Sequences:

>Translated_264_residues
MHDEALIRLAFFFGVLAAVAIWEVAAPRRRLTDSKARRWYTNLSLVAIDTAVVRLTLTVLPADMAVQAREHGWGLMNTVV
LPPSAGILLAFIALDLIIYLQHVLFHFLPVLWRLHRMHHTDLDIDVTTGNRFHPVEIFLSAGIKLGAVALLGAPVVAVVA
FEVALNATSMFNHGNIRLPLTFDRWLRLVVVTPDMHRVHHSIILRETNSNFGFNLPWWDRLAGTYRPQPEGGHGEMTIGL
KEFRDPAQLTLSRLLVQPFVRKST
>Mature_264_residues
MHDEALIRLAFFFGVLAAVAIWEVAAPRRRLTDSKARRWYTNLSLVAIDTAVVRLTLTVLPADMAVQAREHGWGLMNTVV
LPPSAGILLAFIALDLIIYLQHVLFHFLPVLWRLHRMHHTDLDIDVTTGNRFHPVEIFLSAGIKLGAVALLGAPVVAVVA
FEVALNATSMFNHGNIRLPLTFDRWLRLVVVTPDMHRVHHSIILRETNSNFGFNLPWWDRLAGTYRPQPEGGHGEMTIGL
KEFRDPAQLTLSRLLVQPFVRKST

Specific function: Unknown

COG id: COG3000

COG function: function code I; Sterol desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29751; Mature: 29751

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDEALIRLAFFFGVLAAVAIWEVAAPRRRLTDSKARRWYTNLSLVAIDTAVVRLTLTVL
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCEEEEEHHHHHHHHHEEE
PADMAVQAREHGWGLMNTVVLPPSAGILLAFIALDLIIYLQHVLFHFLPVLWRLHRMHHT
CCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DLDIDVTTGNRFHPVEIFLSAGIKLGAVALLGAPVVAVVAFEVALNATSMFNHGNIRLPL
CCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEE
TFDRWLRLVVVTPDMHRVHHSIILRETNSNFGFNLPWWDRLAGTYRPQPEGGHGEMTIGL
EHHHEEEEEEECCCHHHHHHEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECH
KEFRDPAQLTLSRLLVQPFVRKST
HHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHDEALIRLAFFFGVLAAVAIWEVAAPRRRLTDSKARRWYTNLSLVAIDTAVVRLTLTVL
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCEEEEEHHHHHHHHHEEE
PADMAVQAREHGWGLMNTVVLPPSAGILLAFIALDLIIYLQHVLFHFLPVLWRLHRMHHT
CCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DLDIDVTTGNRFHPVEIFLSAGIKLGAVALLGAPVVAVVAFEVALNATSMFNHGNIRLPL
CCEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEE
TFDRWLRLVVVTPDMHRVHHSIILRETNSNFGFNLPWWDRLAGTYRPQPEGGHGEMTIGL
EHHHEEEEEEECCCHHHHHHEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCEEEECH
KEFRDPAQLTLSRLLVQPFVRKST
HHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA