Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 78223944

GI number: 78223944

Start: 3107219

End: 3109069

Strand: Reverse

Name: bphB [H]

Synonym: Gmet_2748

Alternate gene names: 78223944

Gene position: 3109069-3107219 (Counterclockwise)

Preceding gene: 78223945

Following gene: 78223943

Centisome position: 77.78

GC content: 64.61

Gene sequence:

>1851_bases
ATGAGTGACGACTCCTATCGCAAGTCGTTGAATTTCCTCTTTGTGGAGTTGCTGGAGAATGTCCTGCGGCTGGCGGAGAA
CCCGGGGGAGTGCGGCAGCTACATCACGGCGCAGATCCGCGAGCTGATCGGGGTGCGGATTGTGGCGCTGATGCAGTGCG
TCCCGTCTTCCGAGCGGCCGGCGTATGAACTGGTGAGTGTCTGCCCCGGCCGGGCGCAAGGGGGGGAGCGCCCGGAATCC
TTGCGGCGTCTTGCCGCACGAAGCCATGCCGTTCATGGGCCCGTTGTCTGGTCGTCCGGGGAGAGCCCGCCGGAGGCGAA
GGAGCTTCTCGCCCCGGCGGAAGAATCCGACAGCCTGGTCTTCCCCCTCGATGCCGGCGGTGAAAGGGTCGGCGTCCTCA
TGCTGCTGGGGGTCATGGAGAGCACCGGCCTCGACACCATCTACGCCTCCCTGGCACGGCTTTCGGGCGTTCTGTCCCTC
GTGCTCCGCAACAGTCTCCTCTACAAGGACCTGGAGCGGAAAGTGGCGGAGCGGACCGAGAAGCTGCTGTGGCAGGCGCG
GGTGGATGCCGCCCTGGCCGAACTCTATCCCCCCCTCATCTCCACCTACGCCACGTTCAGGGACATAGCGCTCATCGTCC
TGGAAAAGGCCAAGGAGTTGACCGGGAGCGACCACGGTTACGTGGGAATCGTCGAGTCGGAAACCGGCGTCATGCAGTTG
AACCTCACCACCGACATGATGGAGGGAATCGACTGTTTTGCCTCCCCGGGGAGGAACCTGGCATTTGTACCCGATGCCGC
CGGGCACTATGGGGGACTGTGGGGGCACTCCCTCAACACGCGTAAGCCGTTCTACACCAACAACCCCTCCCGCCATGGGG
CCGCCAAGGGGGTGCCGCAGGGGCATATTGCCGTTCTCCGGTTCCTGTCGGTGCCGGTGGTTTTCGGCCACGCCCTCGTC
GCCCAGATTTCCCTCGCCAATCCTCCGCGCGATTACACGGACCCGGACCTCGACGCCATCTGCCGGATGTCGGAGTTTTT
GGCCCTTGCCATCCAGCGGTTGCGGAGCGAGGAGGAGATCCGCCGGCTCAACACCGAACTGGAGCGGCGGGTCCATGAGC
GGACGGCCCAACTGGAGGCCAGCAACCGGGAGCTGGAGAGCTTCTGCTATTCGGTGTCCCATGACCTGCGGGCTCCGTTG
CGTCATATCGAGGGATACAGCGCCCTGCTCGTGGAAGATTACTGCCGGGAGATCAACGACGAGGCCCACGGTTACCTGGA
GCGGATCAGAGCGGCCACCGCCAAGATGGAGCAGCTGATAGACGCGCTGCTGAACCTGTCGCGGCTGTCACGGGAGCCCC
TGAGGCGCGTTTCCCTCGACCTGTCGCGGATGGTACGCAAGGTGGCCGAGGATCTCGCTCTGTCCGAACCTGCCCGCAGC
GTGGCCTTCAGGATCACCGAAGGGGTCCGGGTGCATGCCGATCCCGTGCTGATGGGGGTGGTCATGACCAACCTCCTCCA
CAATTCCTGGAAGTACACCGCCAACAAGGAGGATGCGCGGATCGAGTTCGGCACCGCCGAGGCAAACGGCGAGACGGTGT
ATTTCATCCGCGATAACGGCGCCGGGTTCGACATGCGGTACGTGGGGAAGCTCTTCGGCGCCTTCCAGCGGCTCCACTCC
GCCGAAGAGTTCGAGGGGATCGGCATCGGGCTGACAACGGTGCAACGGGTCATCCATCGCCACGGCGGTACCATCCGGGC
CGAGGGAAGGCCCGGGGAAGGCGCCTGCTTCTCATTCACCCTTGGCAGCGAAACACCCCCTGTCCCGCCGAACGTCGCCG
ACCCGGCATGA

Upstream 100 bases:

>100_bases
CTTGCGGAGATAGGGTGTTACGTCGGATTGCCGGTGGAGGTTAAGGCGGTTGCGCCTGATCGCCTGGCCGATGCCGTCAG
GAAGGCGCTGGAGGGTTTCA

Downstream 100 bases:

>100_bases
TGATTCGTGACCTGGGGAAGTTGGAGTTCGAGGCGGCGCTGGCCATTCAGGAACAACTGGCGGCCGGGGTGGCTGCCGGA
ACGTCGCCGGAGACGCTTCT

Product: GAF sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 615

Protein sequence:

>616_residues
MSDDSYRKSLNFLFVELLENVLRLAENPGECGSYITAQIRELIGVRIVALMQCVPSSERPAYELVSVCPGRAQGGERPES
LRRLAARSHAVHGPVVWSSGESPPEAKELLAPAEESDSLVFPLDAGGERVGVLMLLGVMESTGLDTIYASLARLSGVLSL
VLRNSLLYKDLERKVAERTEKLLWQARVDAALAELYPPLISTYATFRDIALIVLEKAKELTGSDHGYVGIVESETGVMQL
NLTTDMMEGIDCFASPGRNLAFVPDAAGHYGGLWGHSLNTRKPFYTNNPSRHGAAKGVPQGHIAVLRFLSVPVVFGHALV
AQISLANPPRDYTDPDLDAICRMSEFLALAIQRLRSEEEIRRLNTELERRVHERTAQLEASNRELESFCYSVSHDLRAPL
RHIEGYSALLVEDYCREINDEAHGYLERIRAATAKMEQLIDALLNLSRLSREPLRRVSLDLSRMVRKVAEDLALSEPARS
VAFRITEGVRVHADPVLMGVVMTNLLHNSWKYTANKEDARIEFGTAEANGETVYFIRDNGAGFDMRYVGKLFGAFQRLHS
AEEFEGIGIGLTTVQRVIHRHGGTIRAEGRPGEGACFSFTLGSETPPVPPNVADPA

Sequences:

>Translated_616_residues
MSDDSYRKSLNFLFVELLENVLRLAENPGECGSYITAQIRELIGVRIVALMQCVPSSERPAYELVSVCPGRAQGGERPES
LRRLAARSHAVHGPVVWSSGESPPEAKELLAPAEESDSLVFPLDAGGERVGVLMLLGVMESTGLDTIYASLARLSGVLSL
VLRNSLLYKDLERKVAERTEKLLWQARVDAALAELYPPLISTYATFRDIALIVLEKAKELTGSDHGYVGIVESETGVMQL
NLTTDMMEGIDCFASPGRNLAFVPDAAGHYGGLWGHSLNTRKPFYTNNPSRHGAAKGVPQGHIAVLRFLSVPVVFGHALV
AQISLANPPRDYTDPDLDAICRMSEFLALAIQRLRSEEEIRRLNTELERRVHERTAQLEASNRELESFCYSVSHDLRAPL
RHIEGYSALLVEDYCREINDEAHGYLERIRAATAKMEQLIDALLNLSRLSREPLRRVSLDLSRMVRKVAEDLALSEPARS
VAFRITEGVRVHADPVLMGVVMTNLLHNSWKYTANKEDARIEFGTAEANGETVYFIRDNGAGFDMRYVGKLFGAFQRLHS
AEEFEGIGIGLTTVQRVIHRHGGTIRAEGRPGEGACFSFTLGSETPPVPPNVADPA
>Mature_615_residues
SDDSYRKSLNFLFVELLENVLRLAENPGECGSYITAQIRELIGVRIVALMQCVPSSERPAYELVSVCPGRAQGGERPESL
RRLAARSHAVHGPVVWSSGESPPEAKELLAPAEESDSLVFPLDAGGERVGVLMLLGVMESTGLDTIYASLARLSGVLSLV
LRNSLLYKDLERKVAERTEKLLWQARVDAALAELYPPLISTYATFRDIALIVLEKAKELTGSDHGYVGIVESETGVMQLN
LTTDMMEGIDCFASPGRNLAFVPDAAGHYGGLWGHSLNTRKPFYTNNPSRHGAAKGVPQGHIAVLRFLSVPVVFGHALVA
QISLANPPRDYTDPDLDAICRMSEFLALAIQRLRSEEEIRRLNTELERRVHERTAQLEASNRELESFCYSVSHDLRAPLR
HIEGYSALLVEDYCREINDEAHGYLERIRAATAKMEQLIDALLNLSRLSREPLRRVSLDLSRMVRKVAEDLALSEPARSV
AFRITEGVRVHADPVLMGVVMTNLLHNSWKYTANKEDARIEFGTAEANGETVYFIRDNGAGFDMRYVGKLFGAFQRLHSA
EEFEGIGIGLTTVQRVIHRHGGTIRAEGRPGEGACFSFTLGSETPPVPPNVADPA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786912, Length=236, Percent_Identity=30.9322033898305, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1786600, Length=231, Percent_Identity=27.7056277056277, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI48994928, Length=251, Percent_Identity=23.9043824701195, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788549, Length=226, Percent_Identity=29.2035398230088, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1789149, Length=259, Percent_Identity=24.3243243243243, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1790861, Length=230, Percent_Identity=26.9565217391304, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI145693157, Length=262, Percent_Identity=24.4274809160305, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1790436, Length=234, Percent_Identity=23.5042735042735, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 67999; Mature: 67868

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDDSYRKSLNFLFVELLENVLRLAENPGECGSYITAQIRELIGVRIVALMQCVPSSERP
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AYELVSVCPGRAQGGERPESLRRLAARSHAVHGPVVWSSGESPPEAKELLAPAEESDSLV
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCCCCEE
FPLDAGGERVGVLMLLGVMESTGLDTIYASLARLSGVLSLVLRNSLLYKDLERKVAERTE
EEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLLWQARVDAALAELYPPLISTYATFRDIALIVLEKAKELTGSDHGYVGIVESETGVMQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEE
NLTTDMMEGIDCFASPGRNLAFVPDAAGHYGGLWGHSLNTRKPFYTNNPSRHGAAKGVPQ
EEHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GHIAVLRFLSVPVVFGHALVAQISLANPPRDYTDPDLDAICRMSEFLALAIQRLRSEEEI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
RRLNTELERRVHERTAQLEASNRELESFCYSVSHDLRAPLRHIEGYSALLVEDYCREIND
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCH
EAHGYLERIRAATAKMEQLIDALLNLSRLSREPLRRVSLDLSRMVRKVAEDLALSEPARS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VAFRITEGVRVHADPVLMGVVMTNLLHNSWKYTANKEDARIEFGTAEANGETVYFIRDNG
HHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCC
AGFDMRYVGKLFGAFQRLHSAEEFEGIGIGLTTVQRVIHRHGGTIRAEGRPGEGACFSFT
CCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEE
LGSETPPVPPNVADPA
ECCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDDSYRKSLNFLFVELLENVLRLAENPGECGSYITAQIRELIGVRIVALMQCVPSSERP
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AYELVSVCPGRAQGGERPESLRRLAARSHAVHGPVVWSSGESPPEAKELLAPAEESDSLV
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCCCCCCEE
FPLDAGGERVGVLMLLGVMESTGLDTIYASLARLSGVLSLVLRNSLLYKDLERKVAERTE
EEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLLWQARVDAALAELYPPLISTYATFRDIALIVLEKAKELTGSDHGYVGIVESETGVMQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEE
NLTTDMMEGIDCFASPGRNLAFVPDAAGHYGGLWGHSLNTRKPFYTNNPSRHGAAKGVPQ
EEHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GHIAVLRFLSVPVVFGHALVAQISLANPPRDYTDPDLDAICRMSEFLALAIQRLRSEEEI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
RRLNTELERRVHERTAQLEASNRELESFCYSVSHDLRAPLRHIEGYSALLVEDYCREIND
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCH
EAHGYLERIRAATAKMEQLIDALLNLSRLSREPLRRVSLDLSRMVRKVAEDLALSEPARS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VAFRITEGVRVHADPVLMGVVMTNLLHNSWKYTANKEDARIEFGTAEANGETVYFIRDNG
HHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCC
AGFDMRYVGKLFGAFQRLHSAEEFEGIGIGLTTVQRVIHRHGGTIRAEGRPGEGACFSFT
CCCCHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCEEEEE
LGSETPPVPPNVADPA
ECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]