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The map label for this gene is ydhO [H]

Identifier: 78223568

GI number: 78223568

Start: 2672897

End: 2673697

Strand: Reverse

Name: ydhO [H]

Synonym: Gmet_2365

Alternate gene names: 78223568

Gene position: 2673697-2672897 (Counterclockwise)

Preceding gene: 78223569

Following gene: 78223567

Centisome position: 66.89

GC content: 60.67

Gene sequence:

>801_bases
ATGAAGAGATTCGTTGTCCATCTGATAGCATTTATTGTCGTCTCCCTCCTGGCGGCCGCCGGCTGTGCCGCGCCGCGGGC
GGGAATCTCCCGCATCGGCCACGCCATCCAGGTGGGGGCCTTTTCCGAGGTGAAAAACGCCGAACGCCTGGCGGCCCAGC
TCCAGGTGCGGGGAATCGAAGCCTTCTACTTCAAGCGGGACAATGGTCTCTACGCCGTCCGTTTCGGCGATTTCCCATCC
AAGCAGGCTGCCCAGAAGGAGGCCCGGAAGCTGGTTTCCGACGGCCTTATCGGCGCCTATTTTATCGCGCCGCCCCAGGA
CCTTTCCGGCAAACGCGAAACCGTGGTGAAACGGGAGCCTGCGGCCACCATTGGCCGTCTTCCCGCAGAGCCCCGAAAGA
AGCAGCCCGAAGCCCCGAAGGGGGAGAAGGACATGGGGCAGATTGCTGCCCGTACCGCAGAGCGTTTTGTGGGGATACCC
TACCGTTGGGGGGGTAATACCGTTGTGGACGGGATGGATTGCAGCGGTTTTGCCCGCGCCGTCTACAACCTCTGTGGTGT
CAACATCCCCCGCACCTCCCGGGAACAGTTCAAGGTGGGGGACCCGGTGGCCCGTGACGACCTGAAGGATGGCGACCTGG
TTTTTTTCGGCTCATCCGAGGATAGCATCAACCACGTGGGCATCTACGTGGGAGACAAGCGGTTCGTCCATGCCCCCCGT
CGTGGTGATGACATCAAGATCTCATCCCTCGACGAGAACTACTTTGCGAAGAAGTTCATGGGTGGACGCAGGTATTTCTA
A

Upstream 100 bases:

>100_bases
AAACCGGCAACCCCGACGCGGTTCTGGACGGCGATCTCGAGGAGTTCATCGTCGCCTTCCTCATGGGGGTACGCCGGGAC
GTTAAGGACACCGTAGACTG

Downstream 100 bases:

>100_bases
TTCAGATGAAGTTTCGAAAATGAGGTAATTTCATGGCACTGATCAAACCTTTCCGGGCACTGCGCCCGCCAAAATCTCTG
GCCGAGAAGGTCGCAGCGCT

Product: NLP/P60:sporulation-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKRFVVHLIAFIVVSLLAAAGCAAPRAGISRIGHAIQVGAFSEVKNAERLAAQLQVRGIEAFYFKRDNGLYAVRFGDFPS
KQAAQKEARKLVSDGLIGAYFIAPPQDLSGKRETVVKREPAATIGRLPAEPRKKQPEAPKGEKDMGQIAARTAERFVGIP
YRWGGNTVVDGMDCSGFARAVYNLCGVNIPRTSREQFKVGDPVARDDLKDGDLVFFGSSEDSINHVGIYVGDKRFVHAPR
RGDDIKISSLDENYFAKKFMGGRRYF

Sequences:

>Translated_266_residues
MKRFVVHLIAFIVVSLLAAAGCAAPRAGISRIGHAIQVGAFSEVKNAERLAAQLQVRGIEAFYFKRDNGLYAVRFGDFPS
KQAAQKEARKLVSDGLIGAYFIAPPQDLSGKRETVVKREPAATIGRLPAEPRKKQPEAPKGEKDMGQIAARTAERFVGIP
YRWGGNTVVDGMDCSGFARAVYNLCGVNIPRTSREQFKVGDPVARDDLKDGDLVFFGSSEDSINHVGIYVGDKRFVHAPR
RGDDIKISSLDENYFAKKFMGGRRYF
>Mature_266_residues
MKRFVVHLIAFIVVSLLAAAGCAAPRAGISRIGHAIQVGAFSEVKNAERLAAQLQVRGIEAFYFKRDNGLYAVRFGDFPS
KQAAQKEARKLVSDGLIGAYFIAPPQDLSGKRETVVKREPAATIGRLPAEPRKKQPEAPKGEKDMGQIAARTAERFVGIP
YRWGGNTVVDGMDCSGFARAVYNLCGVNIPRTSREQFKVGDPVARDDLKDGDLVFFGSSEDSINHVGIYVGDKRFVHAPR
RGDDIKISSLDENYFAKKFMGGRRYF

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=112, Percent_Identity=43.75, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786421, Length=160, Percent_Identity=33.75, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1788501, Length=112, Percent_Identity=41.0714285714286, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788001, Length=114, Percent_Identity=38.5964912280702, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 29257; Mature: 29257

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRFVVHLIAFIVVSLLAAAGCAAPRAGISRIGHAIQVGAFSEVKNAERLAAQLQVRGIE
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHEEECCHHHHHHHHHHHHHHHHCCEE
AFYFKRDNGLYAVRFGDFPSKQAAQKEARKLVSDGLIGAYFIAPPQDLSGKRETVVKREP
EEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCC
AATIGRLPAEPRKKQPEAPKGEKDMGQIAARTAERFVGIPYRWGGNTVVDGMDCSGFARA
CHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCHHHHHH
VYNLCGVNIPRTSREQFKVGDPVARDDLKDGDLVFFGSSEDSINHVGIYVGDKRFVHAPR
HHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCEEEECCC
RGDDIKISSLDENYFAKKFMGGRRYF
CCCCEEEECCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MKRFVVHLIAFIVVSLLAAAGCAAPRAGISRIGHAIQVGAFSEVKNAERLAAQLQVRGIE
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHEEECCHHHHHHHHHHHHHHHHCCEE
AFYFKRDNGLYAVRFGDFPSKQAAQKEARKLVSDGLIGAYFIAPPQDLSGKRETVVKREP
EEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHCCC
AATIGRLPAEPRKKQPEAPKGEKDMGQIAARTAERFVGIPYRWGGNTVVDGMDCSGFARA
CHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCHHHHHH
VYNLCGVNIPRTSREQFKVGDPVARDDLKDGDLVFFGSSEDSINHVGIYVGDKRFVHAPR
HHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCEEEECCC
RGDDIKISSLDENYFAKKFMGGRRYF
CCCCEEEECCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]