| Definition | Geobacter metallireducens GS-15 chromosome, complete genome. |
|---|---|
| Accession | NC_007517 |
| Length | 3,997,420 |
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The map label for this gene is mmgA [H]
Identifier: 78223472
GI number: 78223472
Start: 2570329
End: 2571558
Strand: Reverse
Name: mmgA [H]
Synonym: Gmet_2268
Alternate gene names: 78223472
Gene position: 2571558-2570329 (Counterclockwise)
Preceding gene: 78223473
Following gene: 78223471
Centisome position: 64.33
GC content: 59.02
Gene sequence:
>1230_bases ATGGGCAATCAGAACGATATCGTCATTATAAGCGCGGCGCGGACGCCGTTCAGCAAGTTCGGCGGGTTATTGAAGCAGAT TCATAGCATTGAGCTCGGTGCGATGATCATCAGGGAAGTTCTGCAGCGGTCCGGCTTGAAGGGGAGCGACATCGACGAGG TGTATTACGGGATGTGCATCCAGTCGGAAGCTGCGCTCAAGTATAACGTTGTGGCGCGGCAGGCCATGCTGCATGCGGGG CTGCCACCCGAAACCCTTTCTCTGACGGTTGACCGGGCTTGCTGTTCGTCGCTCGCCGCGGTCCAGCTCGGGAGAAAGTC TTTGCTGCTGGATGAGGCAAAGGTCTGTATGGCTGTCGGAGCTGAGAACATGAGCAACACTCCCGTGGTGCTCAATGGCC ATCGCTGGGGGACGGGGCTGGGAAAACCCGAGATGGTGGACCACCTCAATCCGATCATGTACGTGGGGTTCAATTCTCTT GCCGGTGATGCGGGGGCGGTCGCGCTGGAATATGATGTGTCGAGGGAGATGCAGGATGCCTGGGCCTATGCCTCCCAGAT GAAATATCAGGCAGCCAAGGCCGCCGGCAAGTTCAGGCCGGGTGAAGAGGTGGCTGCCATCGAACTCTCCCAGAAAAAGG GCGATCCAGTCATTTTTGCTGAAGACGAATTCCCCAAACCTAACACCACCCCGGAAGGGTTGGCAAAACTCCCACCAGTC TACGGCAGTGCTACGGTGACTGCCGGCAATGCCCCGGGGCTTGACGCCGGTGCGTCGGCCTTGATCATCACCAAACGTGC AACTGCGGACGCGTTGGGTGTCAAGCCGCTGGGCGTCATTCTTTCGGTTGCCAGCGTGGCCAGTGCGCCGCGCGGGATAG CCGAGGTTCCGGCATTTGCGATTCAGAAGGCGCTCGACCGGGCGTCCGTGCAACTCGAGAACGTTGATCTGATCGAGATC AACGAGGCGTTCGCAGCCATGCCGCTGGTGTCAACCAAGATCCTTGCTGATGGCGATCAGACAAAATGGGAAGAGTTGCT GGCCAAAACCAACCCGAACGGCGGAGCCATAGCCATCGGCCATCCTGTCGGTGCAAGTGGGGCCAGGATTTTGATGACCG CCATGTACGAACTGCGCAGGAGAGGTGGCGGGGTTGGTGTGGTCGGTATCTGCGGCGGTCTGGCCCAAGGGGACGCAGCC GTTATCAGCGTTGATGAGAGTTGTCTGTAG
Upstream 100 bases:
>100_bases GCTGGGAAGGAAGTCGGGAGAGGGGTGGTACAAGTACGATAAATAGCTTACTCCGCAGCTGGAAAATATCGCTGGCGAAA GCCATGTAAGGATGGTGCAA
Downstream 100 bases:
>100_bases AAGGAAAGAAGCTTTTTGATCAGAGACAGATGTGCGACGGTTCATTCTTAGTGTCGCCGAGAGTGAGAGAACCATGGAAC AGACACTTGTTTCACCAGCT
Product: thiolase
Products: NA
Alternate protein names: Acetoacetyl-CoA thiolase [H]
Number of amino acids: Translated: 409; Mature: 408
Protein sequence:
>409_residues MGNQNDIVIISAARTPFSKFGGLLKQIHSIELGAMIIREVLQRSGLKGSDIDEVYYGMCIQSEAALKYNVVARQAMLHAG LPPETLSLTVDRACCSSLAAVQLGRKSLLLDEAKVCMAVGAENMSNTPVVLNGHRWGTGLGKPEMVDHLNPIMYVGFNSL AGDAGAVALEYDVSREMQDAWAYASQMKYQAAKAAGKFRPGEEVAAIELSQKKGDPVIFAEDEFPKPNTTPEGLAKLPPV YGSATVTAGNAPGLDAGASALIITKRATADALGVKPLGVILSVASVASAPRGIAEVPAFAIQKALDRASVQLENVDLIEI NEAFAAMPLVSTKILADGDQTKWEELLAKTNPNGGAIAIGHPVGASGARILMTAMYELRRRGGGVGVVGICGGLAQGDAA VISVDESCL
Sequences:
>Translated_409_residues MGNQNDIVIISAARTPFSKFGGLLKQIHSIELGAMIIREVLQRSGLKGSDIDEVYYGMCIQSEAALKYNVVARQAMLHAG LPPETLSLTVDRACCSSLAAVQLGRKSLLLDEAKVCMAVGAENMSNTPVVLNGHRWGTGLGKPEMVDHLNPIMYVGFNSL AGDAGAVALEYDVSREMQDAWAYASQMKYQAAKAAGKFRPGEEVAAIELSQKKGDPVIFAEDEFPKPNTTPEGLAKLPPV YGSATVTAGNAPGLDAGASALIITKRATADALGVKPLGVILSVASVASAPRGIAEVPAFAIQKALDRASVQLENVDLIEI NEAFAAMPLVSTKILADGDQTKWEELLAKTNPNGGAIAIGHPVGASGARILMTAMYELRRRGGGVGVVGICGGLAQGDAA VISVDESCL >Mature_408_residues GNQNDIVIISAARTPFSKFGGLLKQIHSIELGAMIIREVLQRSGLKGSDIDEVYYGMCIQSEAALKYNVVARQAMLHAGL PPETLSLTVDRACCSSLAAVQLGRKSLLLDEAKVCMAVGAENMSNTPVVLNGHRWGTGLGKPEMVDHLNPIMYVGFNSLA GDAGAVALEYDVSREMQDAWAYASQMKYQAAKAAGKFRPGEEVAAIELSQKKGDPVIFAEDEFPKPNTTPEGLAKLPPVY GSATVTAGNAPGLDAGASALIITKRATADALGVKPLGVILSVASVASAPRGIAEVPAFAIQKALDRASVQLENVDLIEIN EAFAAMPLVSTKILADGDQTKWEELLAKTNPNGGAIAIGHPVGASGARILMTAMYELRRRGGGVGVVGICGGLAQGDAAV ISVDESCL
Specific function: Unknown
COG id: COG0183
COG function: function code I; Acetyl-CoA acetyltransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiolase family [H]
Homologues:
Organism=Homo sapiens, GI167614485, Length=405, Percent_Identity=37.037037037037, Blast_Score=218, Evalue=8e-57, Organism=Homo sapiens, GI148539872, Length=404, Percent_Identity=36.3861386138614, Blast_Score=200, Evalue=2e-51, Organism=Homo sapiens, GI4557237, Length=399, Percent_Identity=32.5814536340852, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI4501853, Length=403, Percent_Identity=33.4987593052109, Blast_Score=166, Evalue=3e-41, Organism=Homo sapiens, GI4504327, Length=432, Percent_Identity=29.1666666666667, Blast_Score=135, Evalue=8e-32, Organism=Homo sapiens, GI194353979, Length=404, Percent_Identity=27.4752475247525, Blast_Score=80, Evalue=3e-15, Organism=Escherichia coli, GI87082165, Length=405, Percent_Identity=37.5308641975309, Blast_Score=247, Evalue=1e-66, Organism=Escherichia coli, GI1788554, Length=402, Percent_Identity=39.8009950248756, Blast_Score=223, Evalue=2e-59, Organism=Escherichia coli, GI1787663, Length=404, Percent_Identity=35.1485148514851, Blast_Score=200, Evalue=2e-52, Organism=Escherichia coli, GI48994986, Length=402, Percent_Identity=33.0845771144279, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1788683, Length=417, Percent_Identity=30.6954436450839, Blast_Score=153, Evalue=2e-38, Organism=Caenorhabditis elegans, GI133906874, Length=400, Percent_Identity=33.75, Blast_Score=194, Evalue=8e-50, Organism=Caenorhabditis elegans, GI25147385, Length=394, Percent_Identity=31.4720812182741, Blast_Score=162, Evalue=2e-40, Organism=Caenorhabditis elegans, GI17535921, Length=410, Percent_Identity=30.9756097560976, Blast_Score=152, Evalue=4e-37, Organism=Caenorhabditis elegans, GI17551802, Length=427, Percent_Identity=29.9765807962529, Blast_Score=145, Evalue=4e-35, Organism=Caenorhabditis elegans, GI17535917, Length=397, Percent_Identity=25.9445843828715, Blast_Score=113, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6325229, Length=399, Percent_Identity=33.5839598997494, Blast_Score=182, Evalue=1e-46, Organism=Saccharomyces cerevisiae, GI6322031, Length=407, Percent_Identity=31.6953316953317, Blast_Score=153, Evalue=4e-38, Organism=Drosophila melanogaster, GI24655093, Length=396, Percent_Identity=35.3535353535354, Blast_Score=215, Evalue=5e-56, Organism=Drosophila melanogaster, GI17648125, Length=405, Percent_Identity=36.5432098765432, Blast_Score=206, Evalue=2e-53, Organism=Drosophila melanogaster, GI24640423, Length=396, Percent_Identity=33.8383838383838, Blast_Score=186, Evalue=2e-47, Organism=Drosophila melanogaster, GI17137578, Length=433, Percent_Identity=31.4087759815243, Blast_Score=147, Evalue=1e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002155 - InterPro: IPR016039 - InterPro: IPR016038 - InterPro: IPR020615 - InterPro: IPR020610 - InterPro: IPR020617 - InterPro: IPR020613 - InterPro: IPR020616 [H]
Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]
EC number: =2.3.1.9 [H]
Molecular weight: Translated: 42712; Mature: 42580
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00737 THIOLASE_2 ; PS00099 THIOLASE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNQNDIVIISAARTPFSKFGGLLKQIHSIELGAMIIREVLQRSGLKGSDIDEVYYGMCI CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEE QSEAALKYNVVARQAMLHAGLPPETLSLTVDRACCSSLAAVQLGRKSLLLDEAKVCMAVG CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHC AENMSNTPVVLNGHRWGTGLGKPEMVDHLNPIMYVGFNSLAGDAGAVALEYDVSREMQDA CCCCCCCCEEEECCCCCCCCCCCHHHHHCCCEEEECCHHHCCCCCEEEEEECHHHHHHHH WAYASQMKYQAAKAAGKFRPGEEVAAIELSQKKGDPVIFAEDEFPKPNTTPEGLAKLPPV HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHCCCC YGSATVTAGNAPGLDAGASALIITKRATADALGVKPLGVILSVASVASAPRGIAEVPAFA CCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH IQKALDRASVQLENVDLIEINEAFAAMPLVSTKILADGDQTKWEELLAKTNPNGGAIAIG HHHHHHHHHEEECCCCEEEECHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCCEEEEC HPVGASGARILMTAMYELRRRGGGVGVVGICGGLAQGDAAVISVDESCL CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCC >Mature Secondary Structure GNQNDIVIISAARTPFSKFGGLLKQIHSIELGAMIIREVLQRSGLKGSDIDEVYYGMCI CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEE QSEAALKYNVVARQAMLHAGLPPETLSLTVDRACCSSLAAVQLGRKSLLLDEAKVCMAVG CCCCCHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHHC AENMSNTPVVLNGHRWGTGLGKPEMVDHLNPIMYVGFNSLAGDAGAVALEYDVSREMQDA CCCCCCCCEEEECCCCCCCCCCCHHHHHCCCEEEECCHHHCCCCCEEEEEECHHHHHHHH WAYASQMKYQAAKAAGKFRPGEEVAAIELSQKKGDPVIFAEDEFPKPNTTPEGLAKLPPV HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHCCCC YGSATVTAGNAPGLDAGASALIITKRATADALGVKPLGVILSVASVASAPRGIAEVPAFA CCCEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHH IQKALDRASVQLENVDLIEINEAFAAMPLVSTKILADGDQTKWEELLAKTNPNGGAIAIG HHHHHHHHHEEECCCCEEEECHHHHHHHHHHEEEEECCCHHHHHHHHHHCCCCCCEEEEC HPVGASGARILMTAMYELRRRGGGVGVVGICGGLAQGDAAVISVDESCL CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8759838; 8969508; 9384377 [H]