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The map label for this gene is yrrO [H]

Identifier: 78222108

GI number: 78222108

Start: 978332

End: 979543

Strand: Reverse

Name: yrrO [H]

Synonym: Gmet_0888

Alternate gene names: 78222108

Gene position: 979543-978332 (Counterclockwise)

Preceding gene: 78222119

Following gene: 78222107

Centisome position: 24.5

GC content: 65.02

Gene sequence:

>1212_bases
ATGAAGATTCCCGAGCTCCTCGCGCCGGCCGGCAACCTGGAAAAGCTGAAGGTGGCCATCCACTACGGCGCCGACGCCGT
CTACCTGGGAGGGGAGAAGTTCGGGCTCCGCAGCCTCGCCGACAACTTCACCCTGGCCCACATGGCCGAGGGGATTGCCT
ATGCCCACGACCGGGGGGTAAAGGTCTACCTGACGGTCAACGCCTTTCCCGACAACAGCGAACTGGAGGACCTGGACCGC
TACCTGGAGGGGGTTGCTACAGTCCCCTTCGACGCTTACATCGCCGCCGACCCGGGGGTGATCGCCGCCATCCGCCGCAT
ATCGCCAGATCGTCCCATCCACCTTTCCACCCAGGCCAACACCACCAACTGGCGCAGCGTCCTCTTCTGGCAGAAGCAGG
GGATCGCCCGGGTGAACCTGGCCCGGGAAATGTCCCTGGATGCGATCCGCGAGACCCGGGAGCGGGTCACGGCCGAACTG
GAAGTCTTCGTCCACGGCGCCCTCTGCGTCTCCTACTCGGGTCGCTGCCTCCTCTCCAGCGTCATGACCGGCCGCAACGC
CAACAAGGGGGAGTGCGCCCACCCCTGCCGCTGGAGCTACGCCCTGGTGGAAGAGACCCGACCGGGCGAGTACTTCCCCG
TGGTGGAGGACGAGCGGGGGACCTTCATCTTCAACTCCAAGGATCTCTGCCTCATCCGCCATATCCCTGAACTGGTGGGG
GCCGGCGCCGATTCCCTCAAAATAGAGGGGCGCATGAAGGGAATCCACTACGTGGCCTCGGTGGTGCGAGTCTACCGGGA
GGCCCTGGACAGTTATGCCGCCGATCCTCGCGCCTGGCACATGCAGTCCGAGTGGCTCGAAGAGCTCTCCAAGATCAGCC
ACCGGGGGTACACCACCGGCTTCTTCCTGGGAAAACCAGTGGATGTGGACCTGGAATTCGACTCCCGCTACCGGCGCAGC
CACGAATTCGTCGGCGTGGTGGAAGAGGCGCACCCCGACGGCACCGTTACCGTGGAAGTCCGCAACCGGATCGTGGCAGG
GACCACGGTGGAGGTCATCGGCCGGCGGATGCGCTCCACCCTCCACCGGCTCGACGCGTTCACCGACATGGATGGCAACA
GCCTCTCCGAGGCCCATCCGAACCAGCGGATCCGCGTGAGTCTTCCCGTAGCGGCGGAACGCTACGACCTTATCCGGCGG
GAAAAGCCATAG

Upstream 100 bases:

>100_bases
AGGATTTCCGCGGTCGAAAGCACCATCTGGTTTCCGGGATGATCCCGCGCCACTGATTGAACCCCACTAATAAAGCATGC
ATCATGCCAAGAGGCCTTCC

Downstream 100 bases:

>100_bases
CCCCCTCATCCAAGAAAGACTACTCCATGAAAACTGCCTTCACCGTCTCATCCAACCGGGAGCAGAGCCTGTTCAAGGAT
CTCATCATCCTTGCCGTGGT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MKIPELLAPAGNLEKLKVAIHYGADAVYLGGEKFGLRSLADNFTLAHMAEGIAYAHDRGVKVYLTVNAFPDNSELEDLDR
YLEGVATVPFDAYIAADPGVIAAIRRISPDRPIHLSTQANTTNWRSVLFWQKQGIARVNLAREMSLDAIRETRERVTAEL
EVFVHGALCVSYSGRCLLSSVMTGRNANKGECAHPCRWSYALVEETRPGEYFPVVEDERGTFIFNSKDLCLIRHIPELVG
AGADSLKIEGRMKGIHYVASVVRVYREALDSYAADPRAWHMQSEWLEELSKISHRGYTTGFFLGKPVDVDLEFDSRYRRS
HEFVGVVEEAHPDGTVTVEVRNRIVAGTTVEVIGRRMRSTLHRLDAFTDMDGNSLSEAHPNQRIRVSLPVAAERYDLIRR
EKP

Sequences:

>Translated_403_residues
MKIPELLAPAGNLEKLKVAIHYGADAVYLGGEKFGLRSLADNFTLAHMAEGIAYAHDRGVKVYLTVNAFPDNSELEDLDR
YLEGVATVPFDAYIAADPGVIAAIRRISPDRPIHLSTQANTTNWRSVLFWQKQGIARVNLAREMSLDAIRETRERVTAEL
EVFVHGALCVSYSGRCLLSSVMTGRNANKGECAHPCRWSYALVEETRPGEYFPVVEDERGTFIFNSKDLCLIRHIPELVG
AGADSLKIEGRMKGIHYVASVVRVYREALDSYAADPRAWHMQSEWLEELSKISHRGYTTGFFLGKPVDVDLEFDSRYRRS
HEFVGVVEEAHPDGTVTVEVRNRIVAGTTVEVIGRRMRSTLHRLDAFTDMDGNSLSEAHPNQRIRVSLPVAAERYDLIRR
EKP
>Mature_403_residues
MKIPELLAPAGNLEKLKVAIHYGADAVYLGGEKFGLRSLADNFTLAHMAEGIAYAHDRGVKVYLTVNAFPDNSELEDLDR
YLEGVATVPFDAYIAADPGVIAAIRRISPDRPIHLSTQANTTNWRSVLFWQKQGIARVNLAREMSLDAIRETRERVTAEL
EVFVHGALCVSYSGRCLLSSVMTGRNANKGECAHPCRWSYALVEETRPGEYFPVVEDERGTFIFNSKDLCLIRHIPELVG
AGADSLKIEGRMKGIHYVASVVRVYREALDSYAADPRAWHMQSEWLEELSKISHRGYTTGFFLGKPVDVDLEFDSRYRRS
HEFVGVVEEAHPDGTVTVEVRNRIVAGTTVEVIGRRMRSTLHRLDAFTDMDGNSLSEAHPNQRIRVSLPVAAERYDLIRR
EKP

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=445, Percent_Identity=37.5280898876404, Blast_Score=260, Evalue=1e-70,
Organism=Escherichia coli, GI87081910, Length=430, Percent_Identity=31.1627906976744, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1789548, Length=321, Percent_Identity=33.3333333333333, Blast_Score=152, Evalue=4e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 45244; Mature: 45244

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIPELLAPAGNLEKLKVAIHYGADAVYLGGEKFGLRSLADNFTLAHMAEGIAYAHDRGV
CCCCHHHCCCCCCEEEEEEEEECCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHCCCCCE
KVYLTVNAFPDNSELEDLDRYLEGVATVPFDAYIAADPGVIAAIRRISPDRPIHLSTQAN
EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHCCCCCCEEEEECCC
TTNWRSVLFWQKQGIARVNLAREMSLDAIRETRERVTAELEVFVHGALCVSYSGRCLLSS
CCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCHHHHHH
VMTGRNANKGECAHPCRWSYALVEETRPGEYFPVVEDERGTFIFNSKDLCLIRHIPELVG
HHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCEEEECCCCEEHHHHHHHHHC
AGADSLKIEGRMKGIHYVASVVRVYREALDSYAADPRAWHMQSEWLEELSKISHRGYTTG
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEE
FFLGKPVDVDLEFDSRYRRSHEFVGVVEEAHPDGTVTVEVRNRIVAGTTVEVIGRRMRST
EECCCCEEEEECCCHHHHHCCHHEEEHHHCCCCCEEEEEEECEEEECCHHHHHHHHHHHH
LHRLDAFTDMDGNSLSEAHPNQRIRVSLPVAAERYDLIRREKP
HHHHHHHCCCCCCCCHHCCCCCEEEEECCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKIPELLAPAGNLEKLKVAIHYGADAVYLGGEKFGLRSLADNFTLAHMAEGIAYAHDRGV
CCCCHHHCCCCCCEEEEEEEEECCCEEEECCCCCCHHHHHCCCHHHHHHHHHHHCCCCCE
KVYLTVNAFPDNSELEDLDRYLEGVATVPFDAYIAADPGVIAAIRRISPDRPIHLSTQAN
EEEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHCCCCCCEEEEECCC
TTNWRSVLFWQKQGIARVNLAREMSLDAIRETRERVTAELEVFVHGALCVSYSGRCLLSS
CCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCHHHHHH
VMTGRNANKGECAHPCRWSYALVEETRPGEYFPVVEDERGTFIFNSKDLCLIRHIPELVG
HHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCCCEEEECCCCEEHHHHHHHHHC
AGADSLKIEGRMKGIHYVASVVRVYREALDSYAADPRAWHMQSEWLEELSKISHRGYTTG
CCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEE
FFLGKPVDVDLEFDSRYRRSHEFVGVVEEAHPDGTVTVEVRNRIVAGTTVEVIGRRMRST
EECCCCEEEEECCCHHHHHCCHHEEEHHHCCCCCEEEEEEECEEEECCHHHHHHHHHHHH
LHRLDAFTDMDGNSLSEAHPNQRIRVSLPVAAERYDLIRREKP
HHHHHHHCCCCCCCCHHCCCCCEEEEECCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]