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The map label for this gene is arnA [H]

Identifier: 78222104

GI number: 78222104

Start: 973538

End: 974473

Strand: Reverse

Name: arnA [H]

Synonym: Gmet_0884

Alternate gene names: 78222104

Gene position: 974473-973538 (Counterclockwise)

Preceding gene: 78222105

Following gene: 78222103

Centisome position: 24.38

GC content: 64.21

Gene sequence:

>936_bases
ATGGCTTCGAGTAGTGGGAGAGGAACGAGAGTGGTCGTCTGCGCCTACCACAACGTCGGCTTCCGCTGTCTGGAGGAACT
GCTGAAGCAGGGAGCCGACGTGCGGCTGGTCTTCACCCATGAGGACTCCCCCACGGAGGAGATCTGGTTCCAGTCGGTGC
GGGAACTGGCGCAACGCCACGGCATCCCGTACCTGACCAGCGACATCAACGAGCCGGCCAACGTGGCGAAGGTGCGGGAG
ATCGCCCCCGACTTCCTCTTCTCCTTCTACTACCGGAACATGATCACACCAGAGGTGCTGGATATCCCCCGCAAAGGCGC
CCTGAACCTCCACGGCTCCTACCTCCCCAAGTACCGGGGACGGGTGCCGGTCAACTGGGCAGTGATCAACGGCGAAACCG
AGACCGGCGCCACCCTCCACCACATGGTGGAAAAGCCCGACGCCGGCGACATCGTGGACCGGGAGAAGGTTCCCATTGCT
TTCACCGACACCTCCTTCGATGTCTTCACCAAGGTGACCGATGCGGCAGTGACGGTCATCTCCCGGAGCTACCCGCTCCT
GGTCGCGGGGACCGCCCCCCGCATCCCCATGAACCTGGTGGAGGGGAACTACTGCGGCGGCCGGCGGCCGGCCGACGGGC
TCATCGACTGGACGAAAAGCGCCGTGCAGATCTACAACCTCATTCGCGGCGTCACCCACCCCTACCCGGGCGCCTTCACG
TACCTGGACGGGAAGAAGATCCTTGTCTGGAGCGCCCGGCCGCTTCCGGGAAGCGCAGAGCCAGGGGTGGTGGTCACGGA
AGATCCCCTGGTCGTCGGAACCGGCGAGGGGCTCCTGGAGATCACCTCGTTACAGCTCGAAGGGGGAGACGAGGTTGCGG
CCGGAAGCTTTTCCGCCATCGTCCACCCCGCAGGGAAAAGGTTTGCAAACCCATAG

Upstream 100 bases:

>100_bases
GTCGGCATCATCATCTTCGGCATCGGCCTTGTGGGGGAATACGTGGGGAGGATCTACCAGGAAGTGCGGCGCCGGCCGCG
GTATGTGGTCAGGAGGACCT

Downstream 100 bases:

>100_bases
CATCACCGTCGGCAGGATTGCCGCCGGTCACATTTTACCCACTGGAGATACCATGAAAATCCTCATCCTCGGCGTCAACG
GCTTCATCGGCAACGCCCTC

Product: putative formyltransferase

Products: NA

Alternate protein names: UDP-4-amino-4-deoxy-L-arabinose formyltransferase; ArnAFT; UDP-L-Ara4N formyltransferase; UDP-glucuronic acid oxidase, UDP-4-keto-hexauronic acid decarboxylating; ArnADH; UDP-GlcUA decarboxylase; UDP-glucuronic acid dehydrogenase [H]

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MASSSGRGTRVVVCAYHNVGFRCLEELLKQGADVRLVFTHEDSPTEEIWFQSVRELAQRHGIPYLTSDINEPANVAKVRE
IAPDFLFSFYYRNMITPEVLDIPRKGALNLHGSYLPKYRGRVPVNWAVINGETETGATLHHMVEKPDAGDIVDREKVPIA
FTDTSFDVFTKVTDAAVTVISRSYPLLVAGTAPRIPMNLVEGNYCGGRRPADGLIDWTKSAVQIYNLIRGVTHPYPGAFT
YLDGKKILVWSARPLPGSAEPGVVVTEDPLVVGTGEGLLEITSLQLEGGDEVAAGSFSAIVHPAGKRFANP

Sequences:

>Translated_311_residues
MASSSGRGTRVVVCAYHNVGFRCLEELLKQGADVRLVFTHEDSPTEEIWFQSVRELAQRHGIPYLTSDINEPANVAKVRE
IAPDFLFSFYYRNMITPEVLDIPRKGALNLHGSYLPKYRGRVPVNWAVINGETETGATLHHMVEKPDAGDIVDREKVPIA
FTDTSFDVFTKVTDAAVTVISRSYPLLVAGTAPRIPMNLVEGNYCGGRRPADGLIDWTKSAVQIYNLIRGVTHPYPGAFT
YLDGKKILVWSARPLPGSAEPGVVVTEDPLVVGTGEGLLEITSLQLEGGDEVAAGSFSAIVHPAGKRFANP
>Mature_310_residues
ASSSGRGTRVVVCAYHNVGFRCLEELLKQGADVRLVFTHEDSPTEEIWFQSVRELAQRHGIPYLTSDINEPANVAKVREI
APDFLFSFYYRNMITPEVLDIPRKGALNLHGSYLPKYRGRVPVNWAVINGETETGATLHHMVEKPDAGDIVDREKVPIAF
TDTSFDVFTKVTDAAVTVISRSYPLLVAGTAPRIPMNLVEGNYCGGRRPADGLIDWTKSAVQIYNLIRGVTHPYPGAFTY
LDGKKILVWSARPLPGSAEPGVVVTEDPLVVGTGEGLLEITSLQLEGGDEVAAGSFSAIVHPAGKRFANP

Specific function: Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabin

COG id: COG0223

COG function: function code J; Methionyl-tRNA formyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the sugar epimerase family. UDP-glucuronic acid decarboxylase subfamily [H]

Homologues:

Organism=Homo sapiens, GI21614513, Length=293, Percent_Identity=24.9146757679181, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI238814322, Length=221, Percent_Identity=25.3393665158371, Blast_Score=83, Evalue=3e-16,
Organism=Escherichia coli, GI1788589, Length=283, Percent_Identity=41.3427561837456, Blast_Score=235, Evalue=2e-63,
Organism=Escherichia coli, GI1789683, Length=293, Percent_Identity=28.3276450511945, Blast_Score=121, Evalue=6e-29,
Organism=Caenorhabditis elegans, GI133930964, Length=306, Percent_Identity=26.797385620915, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021168
- InterPro:   IPR001509
- InterPro:   IPR005793
- InterPro:   IPR002376
- InterPro:   IPR011034
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase; PF02911 Formyl_trans_C; PF00551 Formyl_trans_N [H]

EC number: =2.1.2.13; =1.1.1.305 [H]

Molecular weight: Translated: 33962; Mature: 33831

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSSGRGTRVVVCAYHNVGFRCLEELLKQGADVRLVFTHEDSPTEEIWFQSVRELAQRH
CCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC
GIPYLTSDINEPANVAKVREIAPDFLFSFYYRNMITPEVLDIPRKGALNLHGSYLPKYRG
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCEECCCCCCCCCCC
RVPVNWAVINGETETGATLHHMVEKPDAGDIVDREKVPIAFTDTSFDVFTKVTDAAVTVI
CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
SRSYPLLVAGTAPRIPMNLVEGNYCGGRRPADGLIDWTKSAVQIYNLIRGVTHPYPGAFT
HCCCCEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
YLDGKKILVWSARPLPGSAEPGVVVTEDPLVVGTGEGLLEITSLQLEGGDEVAAGSFSAI
EECCCEEEEEECCCCCCCCCCCEEEECCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEE
VHPAGKRFANP
ECCCCHHCCCC
>Mature Secondary Structure 
ASSSGRGTRVVVCAYHNVGFRCLEELLKQGADVRLVFTHEDSPTEEIWFQSVRELAQRH
CCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHC
GIPYLTSDINEPANVAKVREIAPDFLFSFYYRNMITPEVLDIPRKGALNLHGSYLPKYRG
CCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCEECCCCCCCCCCC
RVPVNWAVINGETETGATLHHMVEKPDAGDIVDREKVPIAFTDTSFDVFTKVTDAAVTVI
CCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH
SRSYPLLVAGTAPRIPMNLVEGNYCGGRRPADGLIDWTKSAVQIYNLIRGVTHPYPGAFT
HCCCCEEEECCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
YLDGKKILVWSARPLPGSAEPGVVVTEDPLVVGTGEGLLEITSLQLEGGDEVAAGSFSAI
EECCCEEEEEECCCCCCCCCCCEEEECCCEEEECCCCEEEEEEEEECCCCCCCCCCCEEE
VHPAGKRFANP
ECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA