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The map label for this gene is spsC [H]

Identifier: 78221678

GI number: 78221678

Start: 505594

End: 506790

Strand: Reverse

Name: spsC [H]

Synonym: Gmet_0457

Alternate gene names: 78221678

Gene position: 506790-505594 (Counterclockwise)

Preceding gene: 78221679

Following gene: 78221677

Centisome position: 12.68

GC content: 63.16

Gene sequence:

>1197_bases
ATGAGAAGCGCTCCGATTCCCTACGGCCGCCAGAGCATCAGTCCCGCCGACATCCAGGCCGTCGTCGACGTTCTCAATTC
CGACTGGCTCACCCAAGGCCCCACAGTGGAGCGCTTCGAGCAGACCGTGGCCGGCTACTGCGGCACCGCCCATGGCGTGG
CAGTGAACAGTGCCACCTCGGCCCTCCACATGGCTTGCCTCGCGGCGGGGCTCGGTCCCGGCGACATCCTCTGGACCTCC
CCCAACACCTTTGTGGCCTCCGCCAACTGCGGGCTCTACTGCGGCGCCACCGTGGACTTCGTGGACATCGATCCCCGCAC
CTACAACATGAGCGCCGAACGGCTGGAGGAGAAGCTGGAGCGGGCCGCACGGGAGGGGAAGCTGCCGAAGGTGGTGATCC
CGGTCCATTTCGCGGGGCAGTCGTGCGACATGGAGGCCATCGGCCGCCTTGCCGGGCGGTACGGTTTCACCGTCATCGAG
GATGCCTCCCACGCCATCGGCGGACGGTACAAGAGTGAACCGGTCGGCAATTGCCGCCATTCCGCCATGACGGTCTTCAG
CTTCCACCCCGTCAAGATCATCACCACTGGCGAAGGGGGGATGGTCCTGACTAACAGCGCGGAACTGCACGAGCGGCTGG
TCCGGCTCCGCAGCCACGGCATCACCCGCGACCCGGCCCTCATGGCGGGAGAATCCCACGGCCCCTGGTACTACGAGCAA
ATCGAACTTGGGTTCAACTACCGGATGACCGACATCCAGGCGGCCCTGGGGGTGAGCCAAATGACGCGGCTGGATGAGTT
CGTGGAGAGACGGCACCACCTGGCGAAGCGGTATGACGAGGCACTTCGCGATGACCCGTTTGTTCTGCCGTTCCAGCATC
CCGATAGCTACTCCGCTTTTCACCTGTATGTCATTCGCCTCCAGGCTGGAGAGCCCGGCAGCGGACACAAGGGGCGGAAA
GAGGTGTTCGAGGCTCTCCGGCAGCGTGGCATCCTGGTTAATGTTCATTACATCCCTGTGCATATCCAACCCTACTATCG
CGCAAACGGTTTCGATGCAGGAGATTTCCCTCAAGCGGAGCAGTATTACCGGGAAGCGATCACTCTGCCGCTCTATGCCG
GCCTCGCCGAGATCGACCAGGACCGGGTCATAACAGCACTCCAGGAGCTTCTATGCCCCCCTTCGGCGCCGAAATAA

Upstream 100 bases:

>100_bases
ACAGCGGCACCAACAGCGACTGGCTCAGCGTCGAGCAGCTGAGGGAGTTGATCTACACCCACCTCAACCCTGACATCAAC
CGCCGCAAGGACGATTTCGC

Downstream 100 bases:

>100_bases
CCGGATGGGCAAGAACAAATACGAGGAGGTCGACTAACGCATGAAAATTGCAATTTTCAGGACATCCGGGGTTATTGCCC
CTTTCGTCATAGATGGATAC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 398

Protein sequence:

>398_residues
MRSAPIPYGRQSISPADIQAVVDVLNSDWLTQGPTVERFEQTVAGYCGTAHGVAVNSATSALHMACLAAGLGPGDILWTS
PNTFVASANCGLYCGATVDFVDIDPRTYNMSAERLEEKLERAAREGKLPKVVIPVHFAGQSCDMEAIGRLAGRYGFTVIE
DASHAIGGRYKSEPVGNCRHSAMTVFSFHPVKIITTGEGGMVLTNSAELHERLVRLRSHGITRDPALMAGESHGPWYYEQ
IELGFNYRMTDIQAALGVSQMTRLDEFVERRHHLAKRYDEALRDDPFVLPFQHPDSYSAFHLYVIRLQAGEPGSGHKGRK
EVFEALRQRGILVNVHYIPVHIQPYYRANGFDAGDFPQAEQYYREAITLPLYAGLAEIDQDRVITALQELLCPPSAPK

Sequences:

>Translated_398_residues
MRSAPIPYGRQSISPADIQAVVDVLNSDWLTQGPTVERFEQTVAGYCGTAHGVAVNSATSALHMACLAAGLGPGDILWTS
PNTFVASANCGLYCGATVDFVDIDPRTYNMSAERLEEKLERAAREGKLPKVVIPVHFAGQSCDMEAIGRLAGRYGFTVIE
DASHAIGGRYKSEPVGNCRHSAMTVFSFHPVKIITTGEGGMVLTNSAELHERLVRLRSHGITRDPALMAGESHGPWYYEQ
IELGFNYRMTDIQAALGVSQMTRLDEFVERRHHLAKRYDEALRDDPFVLPFQHPDSYSAFHLYVIRLQAGEPGSGHKGRK
EVFEALRQRGILVNVHYIPVHIQPYYRANGFDAGDFPQAEQYYREAITLPLYAGLAEIDQDRVITALQELLCPPSAPK
>Mature_398_residues
MRSAPIPYGRQSISPADIQAVVDVLNSDWLTQGPTVERFEQTVAGYCGTAHGVAVNSATSALHMACLAAGLGPGDILWTS
PNTFVASANCGLYCGATVDFVDIDPRTYNMSAERLEEKLERAAREGKLPKVVIPVHFAGQSCDMEAIGRLAGRYGFTVIE
DASHAIGGRYKSEPVGNCRHSAMTVFSFHPVKIITTGEGGMVLTNSAELHERLVRLRSHGITRDPALMAGESHGPWYYEQ
IELGFNYRMTDIQAALGVSQMTRLDEFVERRHHLAKRYDEALRDDPFVLPFQHPDSYSAFHLYVIRLQAGEPGSGHKGRK
EVFEALRQRGILVNVHYIPVHIQPYYRANGFDAGDFPQAEQYYREAITLPLYAGLAEIDQDRVITALQELLCPPSAPK

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=387, Percent_Identity=34.625322997416, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI2367285, Length=392, Percent_Identity=29.0816326530612, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 43990; Mature: 43990

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSAPIPYGRQSISPADIQAVVDVLNSDWLTQGPTVERFEQTVAGYCGTAHGVAVNSATS
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHH
ALHMACLAAGLGPGDILWTSPNTFVASANCGLYCGATVDFVDIDPRTYNMSAERLEEKLE
HHHHHHHHHCCCCCCEEEECCCCEEEECCCCEEECCEEEEEECCCCEECCCHHHHHHHHH
RAAREGKLPKVVIPVHFAGQSCDMEAIGRLAGRYGFTVIEDASHAIGGRYKSEPVGNCRH
HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCHH
SAMTVFSFHPVKIITTGEGGMVLTNSAELHERLVRLRSHGITRDPALMAGESHGPWYYEQ
CEEEEEEECCEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCHHEECCCCCCEEEEE
IELGFNYRMTDIQAALGVSQMTRLDEFVERRHHLAKRYDEALRDDPFVLPFQHPDSYSAF
EEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEE
HLYVIRLQAGEPGSGHKGRKEVFEALRQRGILVNVHYIPVHIQPYYRANGFDAGDFPQAE
EEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCCCCCCHHH
QYYREAITLPLYAGLAEIDQDRVITALQELLCPPSAPK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MRSAPIPYGRQSISPADIQAVVDVLNSDWLTQGPTVERFEQTVAGYCGTAHGVAVNSATS
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHH
ALHMACLAAGLGPGDILWTSPNTFVASANCGLYCGATVDFVDIDPRTYNMSAERLEEKLE
HHHHHHHHHCCCCCCEEEECCCCEEEECCCCEEECCEEEEEECCCCEECCCHHHHHHHHH
RAAREGKLPKVVIPVHFAGQSCDMEAIGRLAGRYGFTVIEDASHAIGGRYKSEPVGNCRH
HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCHHHCCCCCCCCCCCCHH
SAMTVFSFHPVKIITTGEGGMVLTNSAELHERLVRLRSHGITRDPALMAGESHGPWYYEQ
CEEEEEEECCEEEEEECCCCEEEECCHHHHHHHHHHHHCCCCCCCHHEECCCCCCEEEEE
IELGFNYRMTDIQAALGVSQMTRLDEFVERRHHLAKRYDEALRDDPFVLPFQHPDSYSAF
EEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEE
HLYVIRLQAGEPGSGHKGRKEVFEALRQRGILVNVHYIPVHIQPYYRANGFDAGDFPQAE
EEEEEEEECCCCCCCCCCHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCCCCCCHHH
QYYREAITLPLYAGLAEIDQDRVITALQELLCPPSAPK
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]