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The map label for this gene is yccM [H]

Identifier: 78221520

GI number: 78221520

Start: 333765

End: 334772

Strand: Direct

Name: yccM [H]

Synonym: Gmet_0297

Alternate gene names: 78221520

Gene position: 333765-334772 (Clockwise)

Preceding gene: 78221519

Following gene: 78221521

Centisome position: 8.35

GC content: 66.67

Gene sequence:

>1008_bases
ATGAACAAACCGAATTTCCACTCACGCATCCCCACTTGGCGAGCCCTGGTCCAGTGGGGCTTTTTCGCCTGGGTAGTCGT
CATCGGCATCCGCTTCGGCGCCTTTGTCCGCCACTTCGAGACAGGGGGAGCCACCCCGCTGGTCACCCGGCCGCCGGGGG
TGGAGGGGTTCCTTCCCATCGGCGCCCTGGCCAGCACGAAGCTCTGGCTCGCCACGGGGACCGTCAATCCGGTCCACCCC
GCGGCGCTGGTCATCTTCCTCACCATCGTCGGCATGAGCCTGGTGGCGAAAAAATCGTTCTGCTCCTGGCTCTGCCCGGT
GGGGACCCTTTCGGAAGCGGCCTGGAAGCTGGGGCAGCGCCTCTTCGGGCGTAATTTTCGCGTCTGGCCCTGGCTCGACG
CGGCGCTGCGGGGGGTGAAGTACCTCCTCCTGCTCTTCTTCGTGAAACTCATCCTCATCGATATGCCGGCCTTGGCCCTG
TCGGCCTTTCTCGACGCCCCCTACTGGGCCGTGAGCGACGTGAAGATGCTCCACTTCTTCACACGGATGTCGGTCACGAC
GGTGGTGGTTCTGGCCGTCCTCACGGGGCTGTCGCTCCTCTACAGGAACGCCTGGTGCCGCTACCTCTGCCCCTACGGCG
CACTCCTGGGGGTGGCGAGCTACCTGAGCCCCTTCAAGATCCGGCGCGATACGGCCGGCTGCACCGGCTGCCGCGGCTGC
AGCCGGGCCTGCCCGTCCGGGCTCCCAGTCCATGAGAAGGAAACGGTCATCTCCGCCGAGTGCACCGGCTGCCTTACCTG
CGTGGCCAGCTGTCCCGAGCGTGACGTGCTCCGGATGGCGCCCCCTTTCTGGCGCCGCCCCCTTCCCGCCTGGGTCTTCC
CGGCCCTGGTGGTGCTCCTCTTCGTCGCCGGCATCGGCACCGGCATGGCCACCGGGAACTGGCACAGCTCCCTTTCCGCC
GACGACTATCGCCGGCTCATACCGATGGTGCCGTACCTGAGCCATTGA

Upstream 100 bases:

>100_bases
GATCAAAGACCCCCTTGCGGGGAAGTAAAGAATATGGGAATGGGAACCGGAGCCGGTAGAGCAATCTGCCGGCTCCGGCC
TTTTTCCGAACGAGGTACCA

Downstream 100 bases:

>100_bases
GGCTGCAATAAATTCGGCACAGCTTGACGCAGGTCAAGGAACAGGTACCGTATTATCTCGTAAGGTAGCAAAAACAGGAG
GTGGTCCCATGCCAGACACT

Product: 4Fe-4S ferredoxin, iron-sulfur binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MNKPNFHSRIPTWRALVQWGFFAWVVVIGIRFGAFVRHFETGGATPLVTRPPGVEGFLPIGALASTKLWLATGTVNPVHP
AALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQRLFGRNFRVWPWLDAALRGVKYLLLLFFVKLILIDMPALAL
SAFLDAPYWAVSDVKMLHFFTRMSVTTVVVLAVLTGLSLLYRNAWCRYLCPYGALLGVASYLSPFKIRRDTAGCTGCRGC
SRACPSGLPVHEKETVISAECTGCLTCVASCPERDVLRMAPPFWRRPLPAWVFPALVVLLFVAGIGTGMATGNWHSSLSA
DDYRRLIPMVPYLSH

Sequences:

>Translated_335_residues
MNKPNFHSRIPTWRALVQWGFFAWVVVIGIRFGAFVRHFETGGATPLVTRPPGVEGFLPIGALASTKLWLATGTVNPVHP
AALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQRLFGRNFRVWPWLDAALRGVKYLLLLFFVKLILIDMPALAL
SAFLDAPYWAVSDVKMLHFFTRMSVTTVVVLAVLTGLSLLYRNAWCRYLCPYGALLGVASYLSPFKIRRDTAGCTGCRGC
SRACPSGLPVHEKETVISAECTGCLTCVASCPERDVLRMAPPFWRRPLPAWVFPALVVLLFVAGIGTGMATGNWHSSLSA
DDYRRLIPMVPYLSH
>Mature_335_residues
MNKPNFHSRIPTWRALVQWGFFAWVVVIGIRFGAFVRHFETGGATPLVTRPPGVEGFLPIGALASTKLWLATGTVNPVHP
AALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQRLFGRNFRVWPWLDAALRGVKYLLLLFFVKLILIDMPALAL
SAFLDAPYWAVSDVKMLHFFTRMSVTTVVVLAVLTGLSLLYRNAWCRYLCPYGALLGVASYLSPFKIRRDTAGCTGCRGC
SRACPSGLPVHEKETVISAECTGCLTCVASCPERDVLRMAPPFWRRPLPAWVFPALVVLLFVAGIGTGMATGNWHSSLSA
DDYRRLIPMVPYLSH

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=329, Percent_Identity=47.112462006079, Blast_Score=286, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36950; Mature: 36950

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKPNFHSRIPTWRALVQWGFFAWVVVIGIRFGAFVRHFETGGATPLVTRPPGVEGFLPI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCH
GALASTKLWLATGTVNPVHPAALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQR
HHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LFGRNFRVWPWLDAALRGVKYLLLLFFVKLILIDMPALALSAFLDAPYWAVSDVKMLHFF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
TRMSVTTVVVLAVLTGLSLLYRNAWCRYLCPYGALLGVASYLSPFKIRRDTAGCTGCRGC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCH
SRACPSGLPVHEKETVISAECTGCLTCVASCPERDVLRMAPPFWRRPLPAWVFPALVVLL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHCCCHHHHHHHHHHHH
FVAGIGTGMATGNWHSSLSADDYRRLIPMVPYLSH
HHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNKPNFHSRIPTWRALVQWGFFAWVVVIGIRFGAFVRHFETGGATPLVTRPPGVEGFLPI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCH
GALASTKLWLATGTVNPVHPAALVIFLTIVGMSLVAKKSFCSWLCPVGTLSEAAWKLGQR
HHHHHCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
LFGRNFRVWPWLDAALRGVKYLLLLFFVKLILIDMPALALSAFLDAPYWAVSDVKMLHFF
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHH
TRMSVTTVVVLAVLTGLSLLYRNAWCRYLCPYGALLGVASYLSPFKIRRDTAGCTGCRGC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCH
SRACPSGLPVHEKETVISAECTGCLTCVASCPERDVLRMAPPFWRRPLPAWVFPALVVLL
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHCCCHHHHHHHHHHHH
FVAGIGTGMATGNWHSSLSADDYRRLIPMVPYLSH
HHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]