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The map label for this gene is ydcP [H]

Identifier: 78221268

GI number: 78221268

Start: 51627

End: 53999

Strand: Direct

Name: ydcP [H]

Synonym: Gmet_0040

Alternate gene names: 78221268

Gene position: 51627-53999 (Clockwise)

Preceding gene: 78221263

Following gene: 78221269

Centisome position: 1.29

GC content: 67.59

Gene sequence:

>2373_bases
ATGCATAAACCCTACGAACAAAAGAAAAAACCGGAACTTCTCGCCCCGGCCGGCTCCCTGGAGGCCTTCTTCGCCGCCAT
GGAGAAGGGGGCTGACGCGGTCTACGCGGGGCTCCGGGAGTTCTCAGCCCGAGCCAAGGCGAAAAACTTTCCCCTCACCC
AGATGGAGCGGATGGTGGCCTACGCCCACGGCCTCGGCCGCAAGGTCTACATCACCCTCAACACCCTGGTGAAGGAGGGG
GAACTGCCGCAGCTCGTGGAGACCCTCGCCGCCCTGGAGGCCATGGGGGCCGATGCCGTCATCCTCCAGGACCTGGGGGT
TGCCCGTCTCATCCGGGACCACTTTCCGGGCCTTCCCCGCCATGCCTCCACCCAGATGACCATCCACAACCTCCCCGGCG
CCCGGATGCTCAGGGATATGGGGTTCGAGCGGGTGGTCCTGGCACGGGAGCTCCACCTCGACGACATCCGCCATATCAGC
CGGGAGTCGGGGGTGGAGATCGAGTGCTTCATCCACGGCGCCCTCTGCTTCGCCATCTCGGGGCAGTGCTACTTCTCGTC
ATTCCTCGGGGGGCACAGCGGCAACCGGGGGCGCTGCGCCCAGCCCTGCCGCCGCCACTACCGCTATCGACAGAACGAGG
GGTACTTCTTCTCCACCAACGACCTCTCCACCGTGGACCTCATCCCCGACCTGTCCGCCGCTGGTGTGGCGTCCCTGAAG
ATCGAGGGGCGGATGAAGTCGGCCGAGTACGTGGCAAGCGTGGTGGAGGCCTACCGCCTCGTCCTCGACGCCCCGGAGCG
CAAGCGGGCCGAGGCGGCGGCCCGGGCCAAGGAGATCCTCAAGTTCTCCTTCGGCCGGGTCCCCACCAAGGGGTTCATGG
CCTCCCGCACCCCCACCGACATCGCCATCCCCACCCTCCGGGGGGCTACGGGGCGCTTTCTCGGGGAAGTGAAGAGCGTG
CGGGGGGACCGGCTCACCTTCGAGACGAAAGACCGCCTCTTCGTGGGGGACCGGGTCCGGGTGCAGCCCAAGAGCGACAT
GGCCGGCAAGGCCTTCACGGTGAAGGATATCTTTGTGGGGAAGGAGCGGGTGAAGTCGGCGAAGGAACGGAGCATCGTCA
CGGTGGTGTCCCCTTTCGCCTTCAAGGCGGGGGACGCGGTCTTCAAGGTCTCCTCCGAGACCGCCTTCACCATGAGCGAG
AACGCCTGCCTGAAACGCCTCGACGCGGTCAAGCCGGGGAAGATCCCTTGTGCCCTTGAGCTTTCCCTTGCCGGGGAGAC
CCTCCGCATCGGCGCTCAGGCCGCCGGTGCCGAATTTGCCGCCGAGTTTCCGGTCGGTCTTCTGGAGCCCTCCACCACCA
GCGACATGGCGGGGGTCCTTCGGGCCCAGTTCTCCCGCACCGGCGAGACCCCCTTCGAGCTTCTGGGTCTTGACGCTCCG
GGCTTCCCCTCGGTCCTCATCCCGCCGGCTCGGCTCAAGGATATCCGTCGCGACTTCTATCGCCGACTGGGCGAGAAGGT
GGCGGCCGGCGTTGCCCAGCGCCGGGCCGAAGCGCGGAAACGGGCACTGGCCTCCCTGGTCCCGCCGGGGCACCCGCGTC
GTGAGGTCAAGGGCGAGGTGACGGTCCGGATCGAGCACCTGCGCGATACCGCAATCCTTCGCCAGCAGGGGGTAGACGCC
ATCATCCTTCCGGTCTCCCGGGCCAACATCCACCAGGTTCCCCTTGCGGCGCGCAAGCTCCGGGGGGATGAGGGGCGGAT
CATCTGGCACCTCCCCTTCGTCATCTTCGACGCGGACCTCCCCTTCTACCAGGAGGCGGTCGCCCTCCTCACGGGGCAGG
GGTTCCGCCGCTTCGAGCTCTCGAACCTCTCCCACTTCCCCCTCCTTGCAGGACGGGACGTGGAGCTCTCCACCGACTAC
CGCCTCTTCTCCCTCAACACCCAGGCCATCATGGCGTGGCACGAGCTGGGGGTGACCACTTCCACCCTCTACATCGAGGA
CGACGTGGAGAACATGGCGGTACTCCTCGGCGCGCCGGTGCCGGTGCGACGGCGGGTCCTGGTCTACGGCGGGGTGCCGG
CCATGACCACCCGCGTCGCCATCAAGGGGGTGAAGGGGGACGCCCCCCTGGTCTCTGACCGGGGCGAAGAGTATGAGGTG
GCGGTGCGGGGAGACCTCACCACCATCACCCCGGCGGTCCGCTTCTCCGTCACCCACTTCCGGGGCCGGCTCCAGGAGGC
GGGGTGCGGCTCTTTCGTGGTGGACCTCTCCCAGGCCCCCCGGGAGCGGTGGCGCCCCATCCTCGACGCCCTTGCCCGGG
GCGAGGGGGTGCCGGGGACGAGCGAATTCAACTTTGTCATGGGATTGGTATAG

Upstream 100 bases:

>100_bases
CCCCTTATATCACTTAGCACACGGCGGCACAAGCGCAAACCGGCTCCTGTTCCGGCCATTCTCCTTGACCTTCTCTCCCC
CCTTCGGGTAGTCTGAACGG

Downstream 100 bases:

>100_bases
ATACTATGGGAAACAGCACCGACTCGATCATCACCGACTATCTCGTCCGCGTCATCGCCAGGGACGGCAGCATCCGGGCT
CTCGCCTGCGTCACTACCGG

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MHKPYEQKKKPELLAPAGSLEAFFAAMEKGADAVYAGLREFSARAKAKNFPLTQMERMVAYAHGLGRKVYITLNTLVKEG
ELPQLVETLAALEAMGADAVILQDLGVARLIRDHFPGLPRHASTQMTIHNLPGARMLRDMGFERVVLARELHLDDIRHIS
RESGVEIECFIHGALCFAISGQCYFSSFLGGHSGNRGRCAQPCRRHYRYRQNEGYFFSTNDLSTVDLIPDLSAAGVASLK
IEGRMKSAEYVASVVEAYRLVLDAPERKRAEAAARAKEILKFSFGRVPTKGFMASRTPTDIAIPTLRGATGRFLGEVKSV
RGDRLTFETKDRLFVGDRVRVQPKSDMAGKAFTVKDIFVGKERVKSAKERSIVTVVSPFAFKAGDAVFKVSSETAFTMSE
NACLKRLDAVKPGKIPCALELSLAGETLRIGAQAAGAEFAAEFPVGLLEPSTTSDMAGVLRAQFSRTGETPFELLGLDAP
GFPSVLIPPARLKDIRRDFYRRLGEKVAAGVAQRRAEARKRALASLVPPGHPRREVKGEVTVRIEHLRDTAILRQQGVDA
IILPVSRANIHQVPLAARKLRGDEGRIIWHLPFVIFDADLPFYQEAVALLTGQGFRRFELSNLSHFPLLAGRDVELSTDY
RLFSLNTQAIMAWHELGVTTSTLYIEDDVENMAVLLGAPVPVRRRVLVYGGVPAMTTRVAIKGVKGDAPLVSDRGEEYEV
AVRGDLTTITPAVRFSVTHFRGRLQEAGCGSFVVDLSQAPRERWRPILDALARGEGVPGTSEFNFVMGLV

Sequences:

>Translated_790_residues
MHKPYEQKKKPELLAPAGSLEAFFAAMEKGADAVYAGLREFSARAKAKNFPLTQMERMVAYAHGLGRKVYITLNTLVKEG
ELPQLVETLAALEAMGADAVILQDLGVARLIRDHFPGLPRHASTQMTIHNLPGARMLRDMGFERVVLARELHLDDIRHIS
RESGVEIECFIHGALCFAISGQCYFSSFLGGHSGNRGRCAQPCRRHYRYRQNEGYFFSTNDLSTVDLIPDLSAAGVASLK
IEGRMKSAEYVASVVEAYRLVLDAPERKRAEAAARAKEILKFSFGRVPTKGFMASRTPTDIAIPTLRGATGRFLGEVKSV
RGDRLTFETKDRLFVGDRVRVQPKSDMAGKAFTVKDIFVGKERVKSAKERSIVTVVSPFAFKAGDAVFKVSSETAFTMSE
NACLKRLDAVKPGKIPCALELSLAGETLRIGAQAAGAEFAAEFPVGLLEPSTTSDMAGVLRAQFSRTGETPFELLGLDAP
GFPSVLIPPARLKDIRRDFYRRLGEKVAAGVAQRRAEARKRALASLVPPGHPRREVKGEVTVRIEHLRDTAILRQQGVDA
IILPVSRANIHQVPLAARKLRGDEGRIIWHLPFVIFDADLPFYQEAVALLTGQGFRRFELSNLSHFPLLAGRDVELSTDY
RLFSLNTQAIMAWHELGVTTSTLYIEDDVENMAVLLGAPVPVRRRVLVYGGVPAMTTRVAIKGVKGDAPLVSDRGEEYEV
AVRGDLTTITPAVRFSVTHFRGRLQEAGCGSFVVDLSQAPRERWRPILDALARGEGVPGTSEFNFVMGLV
>Mature_790_residues
MHKPYEQKKKPELLAPAGSLEAFFAAMEKGADAVYAGLREFSARAKAKNFPLTQMERMVAYAHGLGRKVYITLNTLVKEG
ELPQLVETLAALEAMGADAVILQDLGVARLIRDHFPGLPRHASTQMTIHNLPGARMLRDMGFERVVLARELHLDDIRHIS
RESGVEIECFIHGALCFAISGQCYFSSFLGGHSGNRGRCAQPCRRHYRYRQNEGYFFSTNDLSTVDLIPDLSAAGVASLK
IEGRMKSAEYVASVVEAYRLVLDAPERKRAEAAARAKEILKFSFGRVPTKGFMASRTPTDIAIPTLRGATGRFLGEVKSV
RGDRLTFETKDRLFVGDRVRVQPKSDMAGKAFTVKDIFVGKERVKSAKERSIVTVVSPFAFKAGDAVFKVSSETAFTMSE
NACLKRLDAVKPGKIPCALELSLAGETLRIGAQAAGAEFAAEFPVGLLEPSTTSDMAGVLRAQFSRTGETPFELLGLDAP
GFPSVLIPPARLKDIRRDFYRRLGEKVAAGVAQRRAEARKRALASLVPPGHPRREVKGEVTVRIEHLRDTAILRQQGVDA
IILPVSRANIHQVPLAARKLRGDEGRIIWHLPFVIFDADLPFYQEAVALLTGQGFRRFELSNLSHFPLLAGRDVELSTDY
RLFSLNTQAIMAWHELGVTTSTLYIEDDVENMAVLLGAPVPVRRRVLVYGGVPAMTTRVAIKGVKGDAPLVSDRGEEYEV
AVRGDLTTITPAVRFSVTHFRGRLQEAGCGSFVVDLSQAPRERWRPILDALARGEGVPGTSEFNFVMGLV

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=370, Percent_Identity=37.027027027027, Blast_Score=201, Evalue=2e-52,
Organism=Escherichia coli, GI1788397, Length=203, Percent_Identity=38.423645320197, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI1789548, Length=292, Percent_Identity=32.1917808219178, Blast_Score=139, Evalue=5e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 86867; Mature: 86867

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKPYEQKKKPELLAPAGSLEAFFAAMEKGADAVYAGLREFSARAKAKNFPLTQMERMVA
CCCCCCHHCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YAHGLGRKVYITLNTLVKEGELPQLVETLAALEAMGADAVILQDLGVARLIRDHFPGLPR
HHHCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHCCCCCC
HASTQMTIHNLPGARMLRDMGFERVVLARELHLDDIRHISRESGVEIECFIHGALCFAIS
CCCCEEEEECCCHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCEEEEEEEEEEEEEEC
GQCYFSSFLGGHSGNRGRCAQPCRRHYRYRQNEGYFFSTNDLSTVDLIPDLSAAGVASLK
CCHHHHHHHCCCCCCCCCCHHHHHHHHCEECCCCEEEECCCCCEEEECCCCCCCCEEEEE
IEGRMKSAEYVASVVEAYRLVLDAPERKRAEAAARAKEILKFSFGRVPTKGFMASRTPTD
ECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
IAIPTLRGATGRFLGEVKSVRGDRLTFETKDRLFVGDRVRVQPKSDMAGKAFTVKDIFVG
EECCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEECCEEEECCCCCCCCCEEEEHHHHCC
KERVKSAKERSIVTVVSPFAFKAGDAVFKVSSETAFTMSENACLKRLDAVKPGKIPCALE
HHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCEEEECHHHHHHHHHCCCCCCCCEEEE
LSLAGETLRIGAQAAGAEFAAEFPVGLLEPSTTSDMAGVLRAQFSRTGETPFELLGLDAP
EEECCCEEEECCHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHEEECCCC
GFPSVLIPPARLKDIRRDFYRRLGEKVAAGVAQRRAEARKRALASLVPPGHPRREVKGEV
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEE
TVRIEHLRDTAILRQQGVDAIILPVSRANIHQVPLAARKLRGDEGRIIWHLPFVIFDADL
EEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHCCHHHHHCCCCCCEEEEEEEEEEEECCC
PFYQEAVALLTGQGFRRFELSNLSHFPLLAGRDVELSTDYRLFSLNTQAIMAWHELGVTT
CHHHHHHHHHHCCCCCEEECCCCCCCCEECCCCEEECCCEEEEEECHHHHHHHHHCCCEE
STLYIEDDVENMAVLLGAPVPVRRRVLVYGGVPAMTTRVAIKGVKGDAPLVSDRGEEYEV
EEEEEECCCCCEEEEECCCCCCCCEEEEECCCCHHEEEEEEEECCCCCCCCCCCCCCEEE
AVRGDLTTITPAVRFSVTHFRGRLQEAGCGSFVVDLSQAPRERWRPILDALARGEGVPGT
EEECCCEEECHHHHEEHHHHHHHHHCCCCCCEEEECHHCCHHHHHHHHHHHHCCCCCCCC
SEFNFVMGLV
CCCCEEEECC
>Mature Secondary Structure
MHKPYEQKKKPELLAPAGSLEAFFAAMEKGADAVYAGLREFSARAKAKNFPLTQMERMVA
CCCCCCHHCCCCEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
YAHGLGRKVYITLNTLVKEGELPQLVETLAALEAMGADAVILQDLGVARLIRDHFPGLPR
HHHCCCCEEEEEEEHHHCCCCCHHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHCCCCCC
HASTQMTIHNLPGARMLRDMGFERVVLARELHLDDIRHISRESGVEIECFIHGALCFAIS
CCCCEEEEECCCHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHCCCEEEEEEEEEEEEEEC
GQCYFSSFLGGHSGNRGRCAQPCRRHYRYRQNEGYFFSTNDLSTVDLIPDLSAAGVASLK
CCHHHHHHHCCCCCCCCCCHHHHHHHHCEECCCCEEEECCCCCEEEECCCCCCCCEEEEE
IEGRMKSAEYVASVVEAYRLVLDAPERKRAEAAARAKEILKFSFGRVPTKGFMASRTPTD
ECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
IAIPTLRGATGRFLGEVKSVRGDRLTFETKDRLFVGDRVRVQPKSDMAGKAFTVKDIFVG
EECCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEECCEEEECCCCCCCCCEEEEHHHHCC
KERVKSAKERSIVTVVSPFAFKAGDAVFKVSSETAFTMSENACLKRLDAVKPGKIPCALE
HHHHHHHHHCCEEEEECCCCCCCCCEEEEECCCCEEEECHHHHHHHHHCCCCCCCCEEEE
LSLAGETLRIGAQAAGAEFAAEFPVGLLEPSTTSDMAGVLRAQFSRTGETPFELLGLDAP
EEECCCEEEECCHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHEEECCCC
GFPSVLIPPARLKDIRRDFYRRLGEKVAAGVAQRRAEARKRALASLVPPGHPRREVKGEV
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEE
TVRIEHLRDTAILRQQGVDAIILPVSRANIHQVPLAARKLRGDEGRIIWHLPFVIFDADL
EEEEEHHHHHHHHHHCCCCEEEEECCCCCCHHCCHHHHHCCCCCCEEEEEEEEEEEECCC
PFYQEAVALLTGQGFRRFELSNLSHFPLLAGRDVELSTDYRLFSLNTQAIMAWHELGVTT
CHHHHHHHHHHCCCCCEEECCCCCCCCEECCCCEEECCCEEEEEECHHHHHHHHHCCCEE
STLYIEDDVENMAVLLGAPVPVRRRVLVYGGVPAMTTRVAIKGVKGDAPLVSDRGEEYEV
EEEEEECCCCCEEEEECCCCCCCCEEEEECCCCHHEEEEEEEECCCCCCCCCCCCCCEEE
AVRGDLTTITPAVRFSVTHFRGRLQEAGCGSFVVDLSQAPRERWRPILDALARGEGVPGT
EEECCCEEECHHHHEEHHHHHHHHHCCCCCCEEEECHHCCHHHHHHHHHHHHCCCCCCCC
SEFNFVMGLV
CCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]