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The map label for this gene is ydcN [C]

Identifier: 78067846

GI number: 78067846

Start: 3544017

End: 3544877

Strand: Direct

Name: ydcN [C]

Synonym: Bcep18194_A6377

Alternate gene names: 78067846

Gene position: 3544017-3544877 (Clockwise)

Preceding gene: 78067844

Following gene: 78067851

Centisome position: 95.94

GC content: 69.45

Gene sequence:

>861_bases
ATGCGCGGAATCCCCTGTCCGGCGACTGCACCGCCCGTCCGCTCGCCTCCCGACTCGTTGCCACGAAAGAGATTCATGGA
TTCAGACCTCATGCGTATCGGCCAGCGCATTCGCCGCCTGCGCCGGGAAGCGAAGAAGACGCTGCTGGAAGTCGCGACCG
AAGCGAAGCTGTCGGTCGGATTCCTGTCCCAGGTCGAGCGCCACCTCACGGGCATCTCGCTGTCATCGCTCGTCAACGTC
GCGAAGGCGCTCGACGTGCCGCTCAGCGCGCTGATCGACCAGCCGCGCCAGGCCCAGCCCGATTCTCACGAGGGCCGCCG
CAAGCCGTACGCGCTCGACGCCAGGTCGCAGTGGTACGAACGCCTGTCCACCACGTTCGACGGCAGCCAGATCAACGCGC
TCAAGGTGCAGATGATGGAAGGCTACCGCTCGGAATGGGTCGCGCACGGCGGCGACGAATTCGTGTACGTGCTGGCCGGC
CGGATCTGCTACACGGTCGGCAAGAAGGATTACCCGCTGTCGCCCGGCGACTCGCTGCACTTCGACGCGCGCAAGCGGCA
TCGGGTCGCCAACGTGGGCGACGGGCCGGCCGAGGTGATCGCGGTCGGCACGCTGCCGCTGTTCGACGACCGTGGCGCCG
GATTCGTGTCCGCGACGATGGACCTCCGGAAACCCGCGCCCGTCGCGCGTGCGACGCCGGCCGAGCCGCGCGCGGGCCGC
CGCGGGCCGGCGCCCAAGCGGGCGGAGCGCGATCGCGACGCCGGCCCGGCAGGAAAGGAAAAGAAGGCAGCAGCCAAGCC
GCGCGCATCCGCCGGCAAACGTCCGGCGGCCGCCAAGCCGGCGCGCAAGAAGAAGTCGTAA

Upstream 100 bases:

>100_bases
GGCGTGACGCCTGCGCATCCTGGCACAACGTGAATTCGCCCGGCGACACCGCGCGGTACAATGCGCCGGCATCGCCGTCC
CGACGGCCGTGCTTCGTGCG

Downstream 100 bases:

>100_bases
CGGTTATCGGGAGGCAGGCGCGGGATGCGCGCCCTTCCCCCTATTCGCCGATCTCGAGCGCCTGCGCGACGGCCTCGATC
CGTGCGCGATGCACGGCTTC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin 2 Domain-Containing Protein; Regulatory Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Cro/CI Family; Transcriptional Regulator MerR Family; HTH-Type Transcriptional Regulator; Cupin Domain Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Protein

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MRGIPCPATAPPVRSPPDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISLSSLVNV
AKALDVPLSALIDQPRQAQPDSHEGRRKPYALDARSQWYERLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAG
RICYTVGKKDYPLSPGDSLHFDARKRHRVANVGDGPAEVIAVGTLPLFDDRGAGFVSATMDLRKPAPVARATPAEPRAGR
RGPAPKRAERDRDAGPAGKEKKAAAKPRASAGKRPAAAKPARKKKS

Sequences:

>Translated_286_residues
MRGIPCPATAPPVRSPPDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISLSSLVNV
AKALDVPLSALIDQPRQAQPDSHEGRRKPYALDARSQWYERLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAG
RICYTVGKKDYPLSPGDSLHFDARKRHRVANVGDGPAEVIAVGTLPLFDDRGAGFVSATMDLRKPAPVARATPAEPRAGR
RGPAPKRAERDRDAGPAGKEKKAAAKPRASAGKRPAAAKPARKKKS
>Mature_286_residues
MRGIPCPATAPPVRSPPDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEAKLSVGFLSQVERHLTGISLSSLVNV
AKALDVPLSALIDQPRQAQPDSHEGRRKPYALDARSQWYERLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAG
RICYTVGKKDYPLSPGDSLHFDARKRHRVANVGDGPAEVIAVGTLPLFDDRGAGFVSATMDLRKPAPVARATPAEPRAGR
RGPAPKRAERDRDAGPAGKEKKAAAKPRASAGKRPAAAKPARKKKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31271; Mature: 31271

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGIPCPATAPPVRSPPDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEAKLSVG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSQVERHLTGISLSSLVNVAKALDVPLSALIDQPRQAQPDSHEGRRKPYALDARSQWYE
HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHH
RLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAGRICYTVGKKDYPLSPGDSLH
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCC
FDARKRHRVANVGDGPAEVIAVGTLPLFDDRGAGFVSATMDLRKPAPVARATPAEPRAGR
CCHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCC
RGPAPKRAERDRDAGPAGKEKKAAAKPRASAGKRPAAAKPARKKKS
CCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRGIPCPATAPPVRSPPDSLPRKRFMDSDLMRIGQRIRRLRREAKKTLLEVATEAKLSVG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLSQVERHLTGISLSSLVNVAKALDVPLSALIDQPRQAQPDSHEGRRKPYALDARSQWYE
HHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCEEECHHHHHHH
RLSTTFDGSQINALKVQMMEGYRSEWVAHGGDEFVYVLAGRICYTVGKKDYPLSPGDSLH
HHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCC
FDARKRHRVANVGDGPAEVIAVGTLPLFDDRGAGFVSATMDLRKPAPVARATPAEPRAGR
CCHHHHHHHCCCCCCHHHEEEECCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCC
RGPAPKRAERDRDAGPAGKEKKAAAKPRASAGKRPAAAKPARKKKS
CCCCCCHHHCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA