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The map label for this gene is yhjC [H]

Identifier: 78067453

GI number: 78067453

Start: 3117422

End: 3118396

Strand: Reverse

Name: yhjC [H]

Synonym: Bcep18194_A5984

Alternate gene names: 78067453

Gene position: 3118396-3117422 (Counterclockwise)

Preceding gene: 78067454

Following gene: 78067448

Centisome position: 84.41

GC content: 65.54

Gene sequence:

>975_bases
ATGGACCGAATCCAGGCAATGGAAGTTTTTACCCGCGTGGTCGACGCGAACAGCTTCACGCGCGCGGCCGACACACTCGC
GATGCCGCGCGCGTCGGTGACGACCATCATCCAGAACCTCGAGGCGCTGCTCGGCGTGCGCCTGATGCACCGCACGACGC
GCAGGCTGTCGCTGACGCAGGAAGGTGCGGCGTACTACGAGCATTGCATGAAGATCATCTCGGAGATCGCGGAGGCCGAC
GCGAGTTTCCAGACCGGCAACCGCAAGCCGAGCGGCGTGTTGCGCGTCCACATGCCGAGTTCGCTCGGGCGGCGCATCGT
GCTGCCGTCGCTGTCGATTTTCCGGCAGCGCTACCCGGACATCACGCTTGAACTGGGGCTCTCCGATCGTTATGTGGATC
CGGTCGAGGAGGGCATCGACTGCATGATCCGGGTCGGGCCGCTCGAGGATTCGTCGATGGTCGCGCGGCGGATCGGGATG
CTGAAGCGCGTGACCTGCGCGTCGCCCGATTACCTCGCGCGTCACGGCGAGCCGCACGAGATCGCCGATCTCGCCGAGCA
TCATGCGGTGAATTATCGGTCGAGCCACGGCGCGCGCGCGATTCCGTGGGTGTTCATGATCGACGGCAAGCCCTTCGAGG
TGCGGATGAACGGGGGCGTCACGGTCAACGATTCGGATGCCTATGTGACGTGCGGGCTGGAAGGGTTCGGGATGATCCAG
CCGACGCTGTTCATGGTCCTGGAGAACCTGCTCGACGGCTCGCTGGTCGAGGTGCTGCCGGACTGCAATCCGAAGCCGAA
GCCGATTTCGATCGTGTATCCGCACAACCGGCATCTGTCGCAGAAGGTGCGCGTGTTCGCCGACTGGATCGCGGAGGTGT
TCGAGTCGACGCCGTCGCTGGAAGGCGGGGAGAACTGGCGCGGGCGGGTGGGGGCGCGGGCGGAGAAGGTGCAGAGGGGG
GCGGTGGCGGCGTAA

Upstream 100 bases:

>100_bases
GCCGAAATTATTCAGGATCGGAGAACAATGGGTGGGGGCTTGTGTCGCGCCCGTCGCGCGCTCTATTCTGTTCCGTTGGC
GATTCGAAGGGGGGGGCAGC

Downstream 100 bases:

>100_bases
GGCACCGGGGCGCGGCCGGGGTGGCCGTGTCGCCGGCCACCGCAGTTTTGGCGCCCCGGAAAGTCGAGCGTCGATGCCGC
GGCTTCAATTGCGGGATTGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQEGAAYYEHCMKIISEIAEAD
ASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPDITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGM
LKRVTCASPDYLARHGEPHEIADLAEHHAVNYRSSHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFGMIQ
PTLFMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPSLEGGENWRGRVGARAEKVQRG
AVAA

Sequences:

>Translated_324_residues
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQEGAAYYEHCMKIISEIAEAD
ASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPDITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGM
LKRVTCASPDYLARHGEPHEIADLAEHHAVNYRSSHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFGMIQ
PTLFMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPSLEGGENWRGRVGARAEKVQRG
AVAA
>Mature_324_residues
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQEGAAYYEHCMKIISEIAEAD
ASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPDITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGM
LKRVTCASPDYLARHGEPHEIADLAEHHAVNYRSSHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFGMIQ
PTLFMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPSLEGGENWRGRVGARAEKVQRG
AVAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=41.554054054054, Blast_Score=230, Evalue=1e-61,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=32.8813559322034, Blast_Score=174, Evalue=9e-45,
Organism=Escherichia coli, GI1789639, Length=311, Percent_Identity=29.2604501607717, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI87081978, Length=295, Percent_Identity=29.8305084745763, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=29.1095890410959, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=30.4964539007092, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=28.0701754385965, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1789173, Length=143, Percent_Identity=34.2657342657343, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=22.4913494809689, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=24.4897959183673, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=297, Percent_Identity=21.8855218855219, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36028; Mature: 36028

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQ
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EGAAYYEHCMKIISEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHCCCEEECCCHHHHHHHCCC
ITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGMLKRVTCASPDYLARHGEPHE
EEEEECCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHH
IADLAEHHAVNYRSSHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFGMIQ
HHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCEEECCCCCEEEECCCCCCCHH
PTLFMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPSL
HHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
EGGENWRGRVGARAEKVQRGAVAA
CCCCCCCCCCCHHHHHHHHCCCCC
>Mature Secondary Structure
MDRIQAMEVFTRVVDANSFTRAADTLAMPRASVTTIIQNLEALLGVRLMHRTTRRLSLTQ
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
EGAAYYEHCMKIISEIAEADASFQTGNRKPSGVLRVHMPSSLGRRIVLPSLSIFRQRYPD
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHCCCEEECCCHHHHHHHCCC
ITLELGLSDRYVDPVEEGIDCMIRVGPLEDSSMVARRIGMLKRVTCASPDYLARHGEPHE
EEEEECCCCCCCCHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCHH
IADLAEHHAVNYRSSHGARAIPWVFMIDGKPFEVRMNGGVTVNDSDAYVTCGLEGFGMIQ
HHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEECCCEEECCCCCEEEECCCCCCCHH
PTLFMVLENLLDGSLVEVLPDCNPKPKPISIVYPHNRHLSQKVRVFADWIAEVFESTPSL
HHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
EGGENWRGRVGARAEKVQRGAVAA
CCCCCCCCCCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]