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The map label for this gene is rhaS [C]

Identifier: 78067454

GI number: 78067454

Start: 3118583

End: 3119587

Strand: Reverse

Name: rhaS [C]

Synonym: Bcep18194_A5985

Alternate gene names: 78067454

Gene position: 3119587-3118583 (Counterclockwise)

Preceding gene: 78067457

Following gene: 78067453

Centisome position: 84.45

GC content: 70.75

Gene sequence:

>1005_bases
TTGCCATATCACCCACGTTTTCAGCCAATCGCCATGACTGCCGCCCCGCGTTCGATCCTGGTCCTCGCATTTCCTCGTGC
CCAGCTGCTCGACGTGTCGGGGCCGCTGCAGGTGTTTGCGTCCGTCAACGAGCTGGCGCTGGAGCGCGGCCAGCCGGCGC
CGTATGCGCCGCGCGTCATCGCGGCCGAGGCCGGGCCCGTCGAGACGTCGTCGGGCCTCGTCGTGATGGCCGAATCGCTG
CGCTCGGCTGCGCGCCATCCCGATACGCTGATCGTCGCCGGCGGCAAGGGCGTACATGTGGCTTCGAAGGATGAGCGGCT
CGTGCGCTGGGTGCGGCAGCAGGCGGCGCGCACGCGGCGCGTGGCATCGGTGTGCACCGGCGCGTTCCTGCTCGCCGAGG
CCGGCCTGCTCGACGGGCGGCGTGCGGTCACGCACTGGGCGCGCTGCGACGAATTCGCGGCGCGCTATCCGAACGTGCGC
GTCGAATCCGATCCGATCTTCATCCGCGAAGGCGCGTTGTGGACCTCGGCCGGCGTGACGGCCGGCATCGATCTCGCGCT
CGCGCTGGTCGAGGAGGATCTCGGGCGGGCGACCGCCCTCGACGTCGCGCGCGAACTCGTCGTGTTCCTGAAGCGTCCGG
GCGGGCAGGCCCAGTTCAGCACGATGCTGTCGATGCAGCGCACCGACGACCGGTTCGGTGAACTGCATGCGTGGATGGCC
GAGCACCTGACGGCCGACCTGTCGGTGCCCGCGCTGGCCGAACGCGTGCGCATGAGCGAGCGCAGCTTCGTGCGTCACTA
CCGCGCCGGAACCGGCCGCACGCCGGCGCGCGCGGTCGAACAGATCCGCGTCGAGGCCGCGCAGCGCCTGCTCGGCGAAA
CGGCATGGCCGGTCAAGCGGATCGCTGCGCGTTGCGGCTTCGGGTCGGAGGAAACGCTACGGCGCTGCTTCGTGCGCGTG
CTGGGCGTGTCGCCGCAGGGGTATCGCGAGCGATTCGTGCGGTAA

Upstream 100 bases:

>100_bases
CGATATGCAGGGACATGCGAAGACTCCGCTTGGAAGGGGAACGCGCCGTTGCCGGCACGGGATGGACAGATCGATTCTAG
GCGCGTAGGGTTTGGCGAAA

Downstream 100 bases:

>100_bases
CGCACCGCGTGCGGCAGCGACCGAGTGGGGCCGGAACGATCGCCGCACGGGACTGAACGGAAATCGATCGCTTTCCAGTC
CGAAGCGCCGAAATTATTCA

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MPYHPRFQPIAMTAAPRSILVLAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRVIAAEAGPVETSSGLVVMAESL
RSAARHPDTLIVAGGKGVHVASKDERLVRWVRQQAARTRRVASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVR
VESDPIFIREGALWTSAGVTAGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTDDRFGELHAWMA
EHLTADLSVPALAERVRMSERSFVRHYRAGTGRTPARAVEQIRVEAAQRLLGETAWPVKRIAARCGFGSEETLRRCFVRV
LGVSPQGYRERFVR

Sequences:

>Translated_334_residues
MPYHPRFQPIAMTAAPRSILVLAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRVIAAEAGPVETSSGLVVMAESL
RSAARHPDTLIVAGGKGVHVASKDERLVRWVRQQAARTRRVASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVR
VESDPIFIREGALWTSAGVTAGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTDDRFGELHAWMA
EHLTADLSVPALAERVRMSERSFVRHYRAGTGRTPARAVEQIRVEAAQRLLGETAWPVKRIAARCGFGSEETLRRCFVRV
LGVSPQGYRERFVR
>Mature_333_residues
PYHPRFQPIAMTAAPRSILVLAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRVIAAEAGPVETSSGLVVMAESLR
SAARHPDTLIVAGGKGVHVASKDERLVRWVRQQAARTRRVASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVRV
ESDPIFIREGALWTSAGVTAGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTDDRFGELHAWMAE
HLTADLSVPALAERVRMSERSFVRHYRAGTGRTPARAVEQIRVEAAQRLLGETAWPVKRIAARCGFGSEETLRRCFVRVL
GVSPQGYRERFVR

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C56 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI [H]

EC number: NA

Molecular weight: Translated: 36699; Mature: 36567

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYHPRFQPIAMTAAPRSILVLAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRVI
CCCCCCCCCEEEECCCCEEEEEEECCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
AAEAGPVETSSGLVVMAESLRSAARHPDTLIVAGGKGVHVASKDERLVRWVRQQAARTRR
EECCCCCCCCCCCEEEHHHHHHHHCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHH
VASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVRVESDPIFIREGALWTSAGVT
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCEEECCCCH
AGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTDDRFGELHAWMA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EHLTADLSVPALAERVRMSERSFVRHYRAGTGRTPARAVEQIRVEAAQRLLGETAWPVKR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
IAARCGFGSEETLRRCFVRVLGVSPQGYRERFVR
HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure 
PYHPRFQPIAMTAAPRSILVLAFPRAQLLDVSGPLQVFASVNELALERGQPAPYAPRVI
CCCCCCCCEEEECCCCEEEEEEECCHHEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEE
AAEAGPVETSSGLVVMAESLRSAARHPDTLIVAGGKGVHVASKDERLVRWVRQQAARTRR
EECCCCCCCCCCCEEEHHHHHHHHCCCCEEEEECCCEEEECCCHHHHHHHHHHHHHHHHH
VASVCTGAFLLAEAGLLDGRRAVTHWARCDEFAARYPNVRVESDPIFIREGALWTSAGVT
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCEEECCCCH
AGIDLALALVEEDLGRATALDVARELVVFLKRPGGQAQFSTMLSMQRTDDRFGELHAWMA
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
EHLTADLSVPALAERVRMSERSFVRHYRAGTGRTPARAVEQIRVEAAQRLLGETAWPVKR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
IAARCGFGSEETLRRCFVRVLGVSPQGYRERFVR
HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8157602 [H]