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The map label for this gene is fanD [H]

Identifier: 78067228

GI number: 78067228

Start: 2868042

End: 2870399

Strand: Direct

Name: fanD [H]

Synonym: Bcep18194_A5759

Alternate gene names: 78067228

Gene position: 2868042-2870399 (Clockwise)

Preceding gene: 78067227

Following gene: 78067229

Centisome position: 77.64

GC content: 71.37

Gene sequence:

>2358_bases
GTGCCGACGACGCGCGATGCCCACCGGGCCAACGCCCCCGCGCGACACGCGCGGCTCGCTGCCACCCTCGCGATCGCGCT
GGCGCTGCATGCCGTCGCGGCACGCGCCGAGCCGGCACCCGCGCGGCCCGCCCCCGCGGCGGCCCCCGAACCCGGCGTGC
TGTTTCTCGACGTGTCGCTCAACGGCGAGCCGACTCACCGGATCGCCCGCGTCCAGCAGATCGACGGGCGACTCTACGCG
GCCTCCGCCGACCTGAACGATCTCGGCGTCGCGACGGGCGACCGCACGCACGAGCCGTCGAATGCGCTCGTCGCGCTCGA
CACGCTTCCGGGGCTGCGCTACGACGTGGACACGAGCCGCCAGACGCTCGACCTGCGCGTGCCCGACGCGCTGCGCATTC
CGCACACGTTCGATACGCGCGCGCTCACCGCCGCGCCGCCCGCCACGGCCGGCCGCGGCTTCGTGCTGAACTACGATGCC
TACGCGCAGACCCTCGCCCATTCGCCGCTCGCGATCTGGAGCGAGGCGCGCTACTTCGACCCGGCCGGCGTCTTCAGCAG
CACCGGCATCGCATACCTGTACGACGATCGCCAGCGCTACCTGCGCTACGACACGTCGTGGACGCGCTCGAACCCGGCGA
CGCTCACGACCACGCAGTTCGGCGACACGATCTCGTCGTCGCTGTCGTGGACGCGCTCGCTGCGCATCGGCGGCGTGCAA
TGGCGCAGCAACTTCGGCCTGCGTCCCGATCTCGTGACGTTCCCGGTACCGGCGCTGTCCGGCAGCGCGGTCGTGCCGAC
GTCGGTCGACCTGTACGTGAACAACGTGCGCCAGTTCAGCGGCGACGTGCCGGGCGGGCCGTTCGTGATCAACAGCGTGC
CGGGCATCACCGGCGCGGGTAACGCCACGGTCGTCACGCGCGACGCGCTGGGCCGCTCGGTGTCGACGTCGATCCCGCTG
TACATCGATACGCGCCTGCTCGCGCCGGGCCTCGCGAGCTATTCGGTCGAGGCGGGTTTCCTGCGCCGCGCGTACGGCAT
CACCTCGTTCGACTACGCACACACACCGGCGGCGAGCGGCTCGCTGCGCTACGGCATCAGCGAGCGGCTGACCGTCGAGG
CGCACGCGGAAGCGACGACCGGCGTCTACAACGCCGGCGCGGGCGTGCTCGCGCGCATCGGCAACGGCGGCGTCGCGAAC
GCGTCGCTGGCCGTCAGCGCGCAGCGCAGCGCCGGTGCGCAGGTGGGCCTGGGCTACCAGTACGTGACGCCGCATTTCTC
GATCGATGCGCAGACGCAGCGCGCATTCGGCGGCTACGGCGACCTCGGTGCGCGCGAAGGGATCCCGGTGTCGAGTGCCT
CGGACCGCATCACGGTGTCGTTTCCGTTCCTGCGCGCGCAGACGCTGTCGTTCAGCTATCTCGGCCTCAAGTACCCGGGC
ATCGATGCATCGCGCATCGGCTCGATCGCGTACCTCGTCAATCTCGGCATGCTGACCTCGCTGACCGTCAGCGCGTTCCA
GGATTTCCGGCAGCGCGACACGCGCGGCTTCTTCGCGAGCCTGAGCATCGGCCTCGGCGGCAACACATCGGTCTCGGCCA
GCGCGGGCCGGCAGAATGGCGAATCGACCTTCGCGGTGAACGCCACGCGCCCGCCCGACTACGGCGGCGGCTTCGGCTGG
AACGTGCAGGCGGGCACCAGCGCCGCGCTGCGCTACGGGCAGGGTCAATTGCAGTATCTCGGCCGCGCCGGCGAGGTCAC
GCTGCTCGCGCAGTCGTTCGGCGGGCGCGGCAACGCGTCGGTCGACGTCACCGGCGCGCTCGTGCTGATGGACGGCCGGC
TGATGACGGCGCGCCGCATCGACGACAGCTTCGCGCTCGTCTCGACCGATACGGGGCGCGTCCCCGTGCTGCACCAGAAC
CGGCTGATCGGCGAGACCAGCCGCGCCGGCTACCTGCTGGTGCCCGATCTGAACGCCTACCAGAACAATCGCGTCGCGAT
CGACGGCGCGACGCTACCGGCCGATGCGCGCATCGCCGACACGACGCTCGACGTCGTGCCACAGGCGCGCTCCGGCGTGC
TCGCGCATTTCGCCGTGTCGCGCTACAGCGCGGCGTCGATCATCCTGCACGCGCCCGACGGTACGCCGCTGCCGCCGGGG
CTCGAAGTCCGCGACGTCGAGAACGGCCAGCGCACGATCGTCGGCTACGACGGCCTCACGTTCGTCGACGGCCTCGTCGA
GCACAACCGCCTGGAAATCTCCGGCAACGGCCACGATTGCGCGGTTGCCTTCGCGTACCGGCGGCCGGACGACGGCACGC
TGCCGCGGATCGGCCCGCTGACCTGCTCGCCGCGCTAG

Upstream 100 bases:

>100_bases
CGGCATCGTTCGTCAAGGTGCAGGCAACCGTCAACGCGCAGCCGGTCGAGGCGCAGTTGACGCCACCCTGACGCGCGGGC
ACGAACCCGCCACGCTGCCC

Downstream 100 bases:

>100_bases
CGCCCGCGCCGCTCCCGCCCCCGACGGGCTTGTGCCGGACACCCGGCCGCGAATGCTAAAATCACCGGATTCCTCGGCGG
CGCACGCCGCTCAATCTCCC

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 785; Mature: 784

Protein sequence:

>785_residues
MPTTRDAHRANAPARHARLAATLAIALALHAVAARAEPAPARPAPAAAPEPGVLFLDVSLNGEPTHRIARVQQIDGRLYA
ASADLNDLGVATGDRTHEPSNALVALDTLPGLRYDVDTSRQTLDLRVPDALRIPHTFDTRALTAAPPATAGRGFVLNYDA
YAQTLAHSPLAIWSEARYFDPAGVFSSTGIAYLYDDRQRYLRYDTSWTRSNPATLTTTQFGDTISSSLSWTRSLRIGGVQ
WRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVRQFSGDVPGGPFVINSVPGITGAGNATVVTRDALGRSVSTSIPL
YIDTRLLAPGLASYSVEAGFLRRAYGITSFDYAHTPAASGSLRYGISERLTVEAHAEATTGVYNAGAGVLARIGNGGVAN
ASLAVSAQRSAGAQVGLGYQYVTPHFSIDAQTQRAFGGYGDLGAREGIPVSSASDRITVSFPFLRAQTLSFSYLGLKYPG
IDASRIGSIAYLVNLGMLTSLTVSAFQDFRQRDTRGFFASLSIGLGGNTSVSASAGRQNGESTFAVNATRPPDYGGGFGW
NVQAGTSAALRYGQGQLQYLGRAGEVTLLAQSFGGRGNASVDVTGALVLMDGRLMTARRIDDSFALVSTDTGRVPVLHQN
RLIGETSRAGYLLVPDLNAYQNNRVAIDGATLPADARIADTTLDVVPQARSGVLAHFAVSRYSAASIILHAPDGTPLPPG
LEVRDVENGQRTIVGYDGLTFVDGLVEHNRLEISGNGHDCAVAFAYRRPDDGTLPRIGPLTCSPR

Sequences:

>Translated_785_residues
MPTTRDAHRANAPARHARLAATLAIALALHAVAARAEPAPARPAPAAAPEPGVLFLDVSLNGEPTHRIARVQQIDGRLYA
ASADLNDLGVATGDRTHEPSNALVALDTLPGLRYDVDTSRQTLDLRVPDALRIPHTFDTRALTAAPPATAGRGFVLNYDA
YAQTLAHSPLAIWSEARYFDPAGVFSSTGIAYLYDDRQRYLRYDTSWTRSNPATLTTTQFGDTISSSLSWTRSLRIGGVQ
WRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVRQFSGDVPGGPFVINSVPGITGAGNATVVTRDALGRSVSTSIPL
YIDTRLLAPGLASYSVEAGFLRRAYGITSFDYAHTPAASGSLRYGISERLTVEAHAEATTGVYNAGAGVLARIGNGGVAN
ASLAVSAQRSAGAQVGLGYQYVTPHFSIDAQTQRAFGGYGDLGAREGIPVSSASDRITVSFPFLRAQTLSFSYLGLKYPG
IDASRIGSIAYLVNLGMLTSLTVSAFQDFRQRDTRGFFASLSIGLGGNTSVSASAGRQNGESTFAVNATRPPDYGGGFGW
NVQAGTSAALRYGQGQLQYLGRAGEVTLLAQSFGGRGNASVDVTGALVLMDGRLMTARRIDDSFALVSTDTGRVPVLHQN
RLIGETSRAGYLLVPDLNAYQNNRVAIDGATLPADARIADTTLDVVPQARSGVLAHFAVSRYSAASIILHAPDGTPLPPG
LEVRDVENGQRTIVGYDGLTFVDGLVEHNRLEISGNGHDCAVAFAYRRPDDGTLPRIGPLTCSPR
>Mature_784_residues
PTTRDAHRANAPARHARLAATLAIALALHAVAARAEPAPARPAPAAAPEPGVLFLDVSLNGEPTHRIARVQQIDGRLYAA
SADLNDLGVATGDRTHEPSNALVALDTLPGLRYDVDTSRQTLDLRVPDALRIPHTFDTRALTAAPPATAGRGFVLNYDAY
AQTLAHSPLAIWSEARYFDPAGVFSSTGIAYLYDDRQRYLRYDTSWTRSNPATLTTTQFGDTISSSLSWTRSLRIGGVQW
RSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVRQFSGDVPGGPFVINSVPGITGAGNATVVTRDALGRSVSTSIPLY
IDTRLLAPGLASYSVEAGFLRRAYGITSFDYAHTPAASGSLRYGISERLTVEAHAEATTGVYNAGAGVLARIGNGGVANA
SLAVSAQRSAGAQVGLGYQYVTPHFSIDAQTQRAFGGYGDLGAREGIPVSSASDRITVSFPFLRAQTLSFSYLGLKYPGI
DASRIGSIAYLVNLGMLTSLTVSAFQDFRQRDTRGFFASLSIGLGGNTSVSASAGRQNGESTFAVNATRPPDYGGGFGWN
VQAGTSAALRYGQGQLQYLGRAGEVTLLAQSFGGRGNASVDVTGALVLMDGRLMTARRIDDSFALVSTDTGRVPVLHQNR
LIGETSRAGYLLVPDLNAYQNNRVAIDGATLPADARIADTTLDVVPQARSGVLAHFAVSRYSAASIILHAPDGTPLPPGL
EVRDVENGQRTIVGYDGLTFVDGLVEHNRLEISGNGHDCAVAFAYRRPDDGTLPRIGPLTCSPR

Specific function: Involved in the export and assembly of K99 fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789533, Length=170, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 82955; Mature: 82823

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTTRDAHRANAPARHARLAATLAIALALHAVAARAEPAPARPAPAAAPEPGVLFLDVSL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEE
NGEPTHRIARVQQIDGRLYAASADLNDLGVATGDRTHEPSNALVALDTLPGLRYDVDTSR
CCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCC
QTLDLRVPDALRIPHTFDTRALTAAPPATAGRGFVLNYDAYAQTLAHSPLAIWSEARYFD
EEEEEECCCCEECCCCCCCCEEECCCCCCCCCCEEEECHHHHHHHHCCCCEEECCCCCCC
PAGVFSSTGIAYLYDDRQRYLRYDTSWTRSNPATLTTTQFGDTISSSLSWTRSLRIGGVQ
CCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCEEEEEEECCEE
WRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVRQFSGDVPGGPFVINSVPGITGAG
EECCCCCCCCEEEECCCCCCCCEECCCEEEEEEECHHHHCCCCCCCCEEEECCCCCCCCC
NATVVTRDALGRSVSTSIPLYIDTRLLAPGLASYSVEAGFLRRAYGITSFDYAHTPAASG
CEEEEEHHHCCCCCCCCCCEEEECEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
SLRYGISERLTVEAHAEATTGVYNAGAGVLARIGNGGVANASLAVSAQRSAGAQVGLGYQ
CEEECCCCEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCEEEEEECCCCCCEECCCEE
YVTPHFSIDAQTQRAFGGYGDLGAREGIPVSSASDRITVSFPFLRAQTLSFSYLGLKYPG
EECCCEEECCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEEEEECCC
IDASRIGSIAYLVNLGMLTSLTVSAFQDFRQRDTRGFFASLSIGLGGNTSVSASAGRQNG
CCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEECCCCCCCC
ESTFAVNATRPPDYGGGFGWNVQAGTSAALRYGQGQLQYLGRAGEVTLLAQSFGGRGNAS
CCEEEEECCCCCCCCCCCCCEECCCCHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCE
VDVTGALVLMDGRLMTARRIDDSFALVSTDTGRVPVLHQNRLIGETSRAGYLLVPDLNAY
EEEEEEEEEECCEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCC
QNNRVAIDGATLPADARIADTTLDVVPQARSGVLAHFAVSRYSAASIILHAPDGTPLPPG
CCCEEEEECCCCCCCCEEECCHHHHCCCCCCCEEEEHHHHCCCEEEEEEECCCCCCCCCC
LEVRDVENGQRTIVGYDGLTFVDGLVEHNRLEISGNGHDCAVAFAYRRPDDGTLPRIGPL
CEEEECCCCCEEEEECCCHHHHHHHHCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
TCSPR
CCCCC
>Mature Secondary Structure 
PTTRDAHRANAPARHARLAATLAIALALHAVAARAEPAPARPAPAAAPEPGVLFLDVSL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEE
NGEPTHRIARVQQIDGRLYAASADLNDLGVATGDRTHEPSNALVALDTLPGLRYDVDTSR
CCCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCC
QTLDLRVPDALRIPHTFDTRALTAAPPATAGRGFVLNYDAYAQTLAHSPLAIWSEARYFD
EEEEEECCCCEECCCCCCCCEEECCCCCCCCCCEEEECHHHHHHHHCCCCEEECCCCCCC
PAGVFSSTGIAYLYDDRQRYLRYDTSWTRSNPATLTTTQFGDTISSSLSWTRSLRIGGVQ
CCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCEEEEECCCCHHHHHHCEEEEEEECCEE
WRSNFGLRPDLVTFPVPALSGSAVVPTSVDLYVNNVRQFSGDVPGGPFVINSVPGITGAG
EECCCCCCCCEEEECCCCCCCCEECCCEEEEEEECHHHHCCCCCCCCEEEECCCCCCCCC
NATVVTRDALGRSVSTSIPLYIDTRLLAPGLASYSVEAGFLRRAYGITSFDYAHTPAASG
CEEEEEHHHCCCCCCCCCCEEEECEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
SLRYGISERLTVEAHAEATTGVYNAGAGVLARIGNGGVANASLAVSAQRSAGAQVGLGYQ
CEEECCCCEEEEEECCCCCCCEEECCCCEEEEECCCCCCCCEEEEEECCCCCCEECCCEE
YVTPHFSIDAQTQRAFGGYGDLGAREGIPVSSASDRITVSFPFLRAQTLSFSYLGLKYPG
EECCCEEECCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEEEEECCC
IDASRIGSIAYLVNLGMLTSLTVSAFQDFRQRDTRGFFASLSIGLGGNTSVSASAGRQNG
CCHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEECCCCCCCC
ESTFAVNATRPPDYGGGFGWNVQAGTSAALRYGQGQLQYLGRAGEVTLLAQSFGGRGNAS
CCEEEEECCCCCCCCCCCCCEECCCCHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCCE
VDVTGALVLMDGRLMTARRIDDSFALVSTDTGRVPVLHQNRLIGETSRAGYLLVPDLNAY
EEEEEEEEEECCEEEEEEECCCCEEEEECCCCCCEEEECCCCCCCCCCCCEEEECCCCCC
QNNRVAIDGATLPADARIADTTLDVVPQARSGVLAHFAVSRYSAASIILHAPDGTPLPPG
CCCEEEEECCCCCCCCEEECCHHHHCCCCCCCEEEEHHHHCCCEEEEEEECCCCCCCCCC
LEVRDVENGQRTIVGYDGLTFVDGLVEHNRLEISGNGHDCAVAFAYRRPDDGTLPRIGPL
CEEEECCCCCEEEEECCCHHHHHHHHCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCCC
TCSPR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2564179; 1713284 [H]