| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78067227
Identifier: 78067227
GI number: 78067227
Start: 2867302
End: 2868012
Strand: Direct
Name: 78067227
Synonym: Bcep18194_A5758
Alternate gene names: NA
Gene position: 2867302-2868012 (Clockwise)
Preceding gene: 78067226
Following gene: 78067228
Centisome position: 77.62
GC content: 73.7
Gene sequence:
>711_bases GTGGCGTTCCTTCCGCGCGCGCTCGCCGCGCTGTGGGCCGCGTCGGCGGCGGCCGTATCCGCGGCCACGCTGCAGATCAC GCCCGTGACGATCGAGCTGCCGCCGTCGGCCGCCGCGGCCAGCGTCATGCTCGACAATCCGGGCGGACGGCCGATCTACG GCCAGGTCCGCACGTACCGCTGGACGCAGGAAAACGGCGACGACGTGATGACGCCGACCGACGCGCTCGCCGCATCGCCG CCGCTGCTGCAGATCGGCGCGAACGCCGGGCAGCTGATCCGGCTCGTGCGCACGGCCCTCGACGCGCCGGCCGCCGAGGA AAGCTATCGCGTCCTGATCGACGAACTGCCCGCGCCTGGCACCCCGGTCGAAAACGGCATCACGATCCGGCTGCGCTATT CGGTGCCCGTGTTCGTCGAACCGCCCGGGATGCCGGCGCCGCCGCGTCTCGCGTGGCGCGTCGAACGCGACGCGCAGGGC CTGCGGCTCGCGGTCGACAATCGCGGCGGGCGGCGGGCGCAGCTTTCCGCGGTCCGGCTGGTCGACGCGCAAGGCGCCAC TCACGAGGTCGCACGCGGCCTGCTCGGCTATGCGCTCGCCGGCAGCACGCGCCGCTGGCCGCTCAGGCTCGACGCGCGCG CGGCATCGTTCGTCAAGGTGCAGGCAACCGTCAACGCGCAGCCGGTCGAGGCGCAGTTGACGCCACCCTGA
Upstream 100 bases:
>100_bases GCAGTCGCTGAACGTGTACGGCCAGGTGCCGGCGCAGGCGACACCGAAGCCCGACACCTATCAGGCGACCGTCACCGCCA CCGTCTACTTCTGACGCCCC
Downstream 100 bases:
>100_bases CGCGCGGGCACGAACCCGCCACGCTGCCCGTGCCGACGACGCGCGATGCCCACCGGGCCAACGCCCCCGCGCGACACGCG CGGCTCGCTGCCACCCTCGC
Product: P pilus assembly protein chaperone PapD-like
Products: NA
Alternate protein names: Type 1 Pili Usher Pathway Chaperone CsuC; Fimbrial Chaperone; P Pilus Assembly Protein Chaperone PapD-Like Protein; CsuC Protein; Pili Assembly Chaperone Transmembrane Protein; P Pilus Assembly Protein Chaperone PapD-Like; Chaperone Protein; Fimbrial Chaperone Protein; Chaperone Protein EcpD; Pilus Assembly Protein Chaperone PapD; P Pilus Assembly Protein Chaperone PapD; Exported Fimbriae-Related Chaperone; Pilus Assembly Protein; CsuC Protein Fimbrial Chaperone Proteins; Putataive Fimbrial Chaperone Protein; Type I Pili; Fimbrial Assembly Chaperone; Pili Assembly Chaperone Transmembrane Protein Papd-Like; PilP Assembly Chaperone Transmembrane Protein; Fimbriae-Assembly Chaperone; Chaperone Protein PmfD; Type 1 Pilus Chaperone FimC; Fimbriae Chaperone; Chaperone Protein MrkB; Type 1 Pili Usher Pathway Chaperone; Type I Pilus Usher Pathway Chaperone CsuC; Pili Assembly Chaperone N-Terminal; Pilus Assembly Chaperone; Pili Assembly Chaperone Protein
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MAFLPRALAALWAASAAAVSAATLQITPVTIELPPSAAAASVMLDNPGGRPIYGQVRTYRWTQENGDDVMTPTDALAASP PLLQIGANAGQLIRLVRTALDAPAAEESYRVLIDELPAPGTPVENGITIRLRYSVPVFVEPPGMPAPPRLAWRVERDAQG LRLAVDNRGGRRAQLSAVRLVDAQGATHEVARGLLGYALAGSTRRWPLRLDARAASFVKVQATVNAQPVEAQLTPP
Sequences:
>Translated_236_residues MAFLPRALAALWAASAAAVSAATLQITPVTIELPPSAAAASVMLDNPGGRPIYGQVRTYRWTQENGDDVMTPTDALAASP PLLQIGANAGQLIRLVRTALDAPAAEESYRVLIDELPAPGTPVENGITIRLRYSVPVFVEPPGMPAPPRLAWRVERDAQG LRLAVDNRGGRRAQLSAVRLVDAQGATHEVARGLLGYALAGSTRRWPLRLDARAASFVKVQATVNAQPVEAQLTPP >Mature_235_residues AFLPRALAALWAASAAAVSAATLQITPVTIELPPSAAAASVMLDNPGGRPIYGQVRTYRWTQENGDDVMTPTDALAASPP LLQIGANAGQLIRLVRTALDAPAAEESYRVLIDELPAPGTPVENGITIRLRYSVPVFVEPPGMPAPPRLAWRVERDAQGL RLAVDNRGGRRAQLSAVRLVDAQGATHEVARGLLGYALAGSTRRWPLRLDARAASFVKVQATVNAQPVEAQLTPP
Specific function: Unknown
COG id: COG3121
COG function: function code NU; P pilus assembly protein, chaperone PapD
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25031; Mature: 24900
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFLPRALAALWAASAAAVSAATLQITPVTIELPPSAAAASVMLDNPGGRPIYGQVRTYR CCCCHHHHHHHHHHHHHHEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCEEEECEEEEE WTQENGDDVMTPTDALAASPPLLQIGANAGQLIRLVRTALDAPAAEESYRVLIDELPAPG ECCCCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC TPVENGITIRLRYSVPVFVEPPGMPAPPRLAWRVERDAQGLRLAVDNRGGRRAQLSAVRL CCCCCCEEEEEEECCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEE VDAQGATHEVARGLLGYALAGSTRRWPLRLDARAASFVKVQATVNAQPVEAQLTPP EECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEECCCCCEEEECCC >Mature Secondary Structure AFLPRALAALWAASAAAVSAATLQITPVTIELPPSAAAASVMLDNPGGRPIYGQVRTYR CCCHHHHHHHHHHHHHHEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCEEEECEEEEE WTQENGDDVMTPTDALAASPPLLQIGANAGQLIRLVRTALDAPAAEESYRVLIDELPAPG ECCCCCCCCCCCCHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCC TPVENGITIRLRYSVPVFVEPPGMPAPPRLAWRVERDAQGLRLAVDNRGGRRAQLSAVRL CCCCCCEEEEEEECCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEE VDAQGATHEVARGLLGYALAGSTRRWPLRLDARAASFVKVQATVNAQPVEAQLTPP EECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEEEEECCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA