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The map label for this gene is nifU [H]

Identifier: 78066900

GI number: 78066900

Start: 2500328

End: 2500735

Strand: Reverse

Name: nifU [H]

Synonym: Bcep18194_A5431

Alternate gene names: 78066900

Gene position: 2500735-2500328 (Counterclockwise)

Preceding gene: 78066901

Following gene: 78066899

Centisome position: 67.69

GC content: 62.01

Gene sequence:

>408_bases
ATGTCTTACAGCAACAAGGTTCTGGATCACTACGAAAACCCGCGCAACGTCGGTTCGTTCGCGAAGGACGACGACACGGT
CGGCACGGGCATGGTCGGCGCGCCGGCCTGCGGCGACGTGATGAAGCTGCAGATCCGCGTCGGCGCGGACGGCGTGATCG
AAGACGCGAAGTTCAAGACCTACGGTTGCGGTTCGGCGATCGCGTCGAGCTCGCTCGTCACCGAATGGGTGAAGGGCAAG
ACGCTCGATGAAGCCCTGTCGATCAAGAACACGCAGATCGCGGAAGAACTCGCGCTGCCGCCGGTGAAGATTCACTGCTC
GATCCTCGCGGAAGACGCGATCAAGGCAGCCGTGGCCGACTACAAGAAGCGTCACGACACCACGGAAGGCGATCAGGCAG
CAGCCTGA

Upstream 100 bases:

>100_bases
TGTCGACGATCGAATGGGCCGCACACTGAGCGCCGGATTGAAGAACATACCCGCGGGCGGATTCGCGCACGCAGACGTTA
CGAGTCAAGGAGTCTGAGTC

Downstream 100 bases:

>100_bases
GCGGCATCGAGCGGCTTTCAGAAGGAACGCGGCGGGCCCCGGTGGCGCGCCGCGGCAAGGACATCATGGCAATTTCACTG
ACCGAAAAAGCAGCACAGCA

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MSYSNKVLDHYENPRNVGSFAKDDDTVGTGMVGAPACGDVMKLQIRVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVADYKKRHDTTEGDQAAA

Sequences:

>Translated_135_residues
MSYSNKVLDHYENPRNVGSFAKDDDTVGTGMVGAPACGDVMKLQIRVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
TLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVADYKKRHDTTEGDQAAA
>Mature_134_residues
SYSNKVLDHYENPRNVGSFAKDDDTVGTGMVGAPACGDVMKLQIRVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGKT
LDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVADYKKRHDTTEGDQAAA

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=129, Percent_Identity=72.0930232558139, Blast_Score=199, Evalue=5e-52,
Organism=Homo sapiens, GI24307953, Length=129, Percent_Identity=71.3178294573643, Blast_Score=196, Evalue=5e-51,
Organism=Escherichia coli, GI1788878, Length=126, Percent_Identity=80.1587301587302, Blast_Score=218, Evalue=9e-59,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=70.7317073170732, Blast_Score=189, Evalue=4e-49,
Organism=Saccharomyces cerevisiae, GI6325122, Length=126, Percent_Identity=68.2539682539683, Blast_Score=182, Evalue=2e-47,
Organism=Saccharomyces cerevisiae, GI6324800, Length=127, Percent_Identity=66.9291338582677, Blast_Score=180, Evalue=6e-47,
Organism=Drosophila melanogaster, GI21355597, Length=120, Percent_Identity=75.8333333333333, Blast_Score=193, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14316; Mature: 14185

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSNKVLDHYENPRNVGSFAKDDDTVGTGMVGAPACGDVMKLQIRVGADGVIEDAKFKT
CCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKKRHDTTEGDQAAA
HHHHCCCCCCCCCCC
>Mature Secondary Structure 
SYSNKVLDHYENPRNVGSFAKDDDTVGTGMVGAPACGDVMKLQIRVGADGVIEDAKFKT
CCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVAD
CCCCHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKKRHDTTEGDQAAA
HHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]