| Definition | Burkholderia sp. 383 chromosome 1, complete genome. |
|---|---|
| Accession | NC_007510 |
| Length | 3,694,126 |
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The map label for this gene is 78066052
Identifier: 78066052
GI number: 78066052
Start: 1555868
End: 1557229
Strand: Direct
Name: 78066052
Synonym: Bcep18194_A4581
Alternate gene names: NA
Gene position: 1555868-1557229 (Clockwise)
Preceding gene: 78066051
Following gene: 78066053
Centisome position: 42.12
GC content: 70.56
Gene sequence:
>1362_bases GTGACGACGGGAATCACGCAGCGCACGGCGAACCTGCGCACGGTAGCGCTGCGCGCAGCCTGCGCGGTCGCGTTTGCGTT CGCCGCACAGCATGCGGCTGCCCAGCCGCCTGCGGCGGCGGGCAAGATGGTCGTCTACCGTACGCAGGCGGGCGACACGC TGTACGACGTCGCCGCGCGCTACCTGCAGGGCGCGGACGACTGGCAACTGCTTCAGAAGATCAACGGCGTGCCCGCGCCG AAGCACCTGCAGCCCGGCATCGCGCTGAAGCTGCCGGTGGCGCGCCTGCGCAAGGAAAAGCTGACCGCCCGCGTCATCGC GGTGCAGGGCACGGCCGAACGCGCGTCCGGCGACGCTTACGCGCCGCTCGCGAACGACGCGACGCTCGCCGAGGGCGATC GCGTGCGCACGGGCCCGAACGGCTTCGTGACACTCGAGCTCGCCGACGGCACGCACATGAGCCTGCCGCCCGACAGCCAG CTCGACCTGAAGGCGCTGCGCCGCACGGTGCTGACCGGCACGCTCGATCGTGAGTTCGAACTCAGGCGCGGCTCGGTCGA CAGCGAAGTCACCCATCTGAAGAAACGCGATGACCGCTTCCAGATCCGGTCGCCGTCGGTCGTGGCCGGTGTGCGCGGCA CGCACTTCCGCGTGAATTACGATGCGGCTGGCAACGCGTCGACGCGCGTCGAAGTGCTCGACGGCACCGTCGGTGTCGCG GGCGACCGCCAGCCGGCCGGCCCGACGCTCGTGCATGCGAATTTCGGCAGCGTCGCGACATCGTCCGGCGCGGTCGGCGC GCCCGTCGAGCTGCTGCCCGCACCGGCGCTCGCGCATCCCGACAAGGTGCAGGACGAGCCCGACGTCGCATTCGACGTTG CACCGCTCGCCCAGGCGCAGGCATACCGCGTCCAGCTCGCGCACGACGCCGGGCTGCTCGACCTGTTCCGCGAAACGCGC ACCGGTTCGCCGCGCGCGGTCTTCCGCGACGTGCCGAACGGGAACTACTTCGTGCGGGTCGCCGCGATCGATGCGAACGG CCTCGAGGGCCGGCCGCGTACGTACGCGTTCGAACGCCGCATGATGGGGCTCGACGCGAGCGCGTCGCCCGGTGCCGGCG GCTACGAGTTCCGCTGGTCGCCGAACGGTTCGGGCAAGGATGCGCGCTACCGGTTCGTGCTGTCGCGCTCGAAGGACCTG AGTGCGCCGGTCGTCGACCAGGTCGGCCTGCATACGCGCCAGATCACCGTCGCGCACCTGCCGCCGGGCGACTATTTCTG GGCCGTGACCGTCGAGGAGTTCGAAGGCGGCAAGTTCTACGAGAAGACCAGTCCGGTCAGCGCGTTCACGCTGTCGCGCT GA
Upstream 100 bases:
>100_bases TGCGCACCAAGCTCGGCCTGCGGCCCGAAAACGGCTATCGCCTTGCGCCGATCTACGGGTACGGCTACCGGCTCGAGCGG GTCGGCCAGGGAGAACCGGA
Downstream 100 bases:
>100_bases TTCGCGGCGCATGAAACCCGACTCCGTTTCTCCACGGCGGCGCCTCGGCCGCCGATTCCTGATCGAATGGATCGCGATCG GCTGCCTCGGGGTCGCCGTG
Product: peptidoglycan-binding LysM
Products: NA
Alternate protein names: FecR Protein; LysM Cell Wall-Like Protein; LysM Domain-Containing; LysM Motif-Containing Protein; LysM Domain Protein
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MTTGITQRTANLRTVALRAACAVAFAFAAQHAAAQPPAAAGKMVVYRTQAGDTLYDVAARYLQGADDWQLLQKINGVPAP KHLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGDAYAPLANDATLAEGDRVRTGPNGFVTLELADGTHMSLPPDSQ LDLKALRRTVLTGTLDREFELRRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTHFRVNYDAAGNASTRVEVLDGTVGVA GDRQPAGPTLVHANFGSVATSSGAVGAPVELLPAPALAHPDKVQDEPDVAFDVAPLAQAQAYRVQLAHDAGLLDLFRETR TGSPRAVFRDVPNGNYFVRVAAIDANGLEGRPRTYAFERRMMGLDASASPGAGGYEFRWSPNGSGKDARYRFVLSRSKDL SAPVVDQVGLHTRQITVAHLPPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR
Sequences:
>Translated_453_residues MTTGITQRTANLRTVALRAACAVAFAFAAQHAAAQPPAAAGKMVVYRTQAGDTLYDVAARYLQGADDWQLLQKINGVPAP KHLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGDAYAPLANDATLAEGDRVRTGPNGFVTLELADGTHMSLPPDSQ LDLKALRRTVLTGTLDREFELRRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTHFRVNYDAAGNASTRVEVLDGTVGVA GDRQPAGPTLVHANFGSVATSSGAVGAPVELLPAPALAHPDKVQDEPDVAFDVAPLAQAQAYRVQLAHDAGLLDLFRETR TGSPRAVFRDVPNGNYFVRVAAIDANGLEGRPRTYAFERRMMGLDASASPGAGGYEFRWSPNGSGKDARYRFVLSRSKDL SAPVVDQVGLHTRQITVAHLPPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR >Mature_452_residues TTGITQRTANLRTVALRAACAVAFAFAAQHAAAQPPAAAGKMVVYRTQAGDTLYDVAARYLQGADDWQLLQKINGVPAPK HLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGDAYAPLANDATLAEGDRVRTGPNGFVTLELADGTHMSLPPDSQL DLKALRRTVLTGTLDREFELRRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTHFRVNYDAAGNASTRVEVLDGTVGVAG DRQPAGPTLVHANFGSVATSSGAVGAPVELLPAPALAHPDKVQDEPDVAFDVAPLAQAQAYRVQLAHDAGLLDLFRETRT GSPRAVFRDVPNGNYFVRVAAIDANGLEGRPRTYAFERRMMGLDASASPGAGGYEFRWSPNGSGKDARYRFVLSRSKDLS APVVDQVGLHTRQITVAHLPPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR
Specific function: Unknown
COG id: COG4254
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48605; Mature: 48474
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGITQRTANLRTVALRAACAVAFAFAAQHAAAQPPAAAGKMVVYRTQAGDTLYDVAAR CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHH YLQGADDWQLLQKINGVPAPKHLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGDAY HHCCCCHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCEEEEEEEECCHHHCCCCEE APLANDATLAEGDRVRTGPNGFVTLELADGTHMSLPPDSQLDLKALRRTVLTGTLDREFE CCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC LRRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTHFRVNYDAAGNASTRVEVLDGTVGVA CCCCCCCHHHHHHHHCCCCEEECCCCEEECCCCCEEEEEECCCCCCCCEEEEEECEEECC GDRQPAGPTLVHANFGSVATSSGAVGAPVELLPAPALAHPDKVQDEPDVAFDVAPLAQAQ CCCCCCCCEEEEECCCCEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECHHHCCC AYRVQLAHDAGLLDLFRETRTGSPRAVFRDVPNGNYFVRVAAIDANGLEGRPRTYAFERR EEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHH MMGLDASASPGAGGYEFRWSPNGSGKDARYRFVLSRSKDLSAPVVDQVGLHTRQITVAHL HHCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCEEEEEEEEC PPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR CCCCEEEEEEEEECCCCEEEECCCCCCEEEECC >Mature Secondary Structure TTGITQRTANLRTVALRAACAVAFAFAAQHAAAQPPAAAGKMVVYRTQAGDTLYDVAAR CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHH YLQGADDWQLLQKINGVPAPKHLQPGIALKLPVARLRKEKLTARVIAVQGTAERASGDAY HHCCCCHHHHHHHHCCCCCCCCCCCCCEEECCHHHHHHHCCEEEEEEEECCHHHCCCCEE APLANDATLAEGDRVRTGPNGFVTLELADGTHMSLPPDSQLDLKALRRTVLTGTLDREFE CCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC LRRGSVDSEVTHLKKRDDRFQIRSPSVVAGVRGTHFRVNYDAAGNASTRVEVLDGTVGVA CCCCCCCHHHHHHHHCCCCEEECCCCEEECCCCCEEEEEECCCCCCCCEEEEEECEEECC GDRQPAGPTLVHANFGSVATSSGAVGAPVELLPAPALAHPDKVQDEPDVAFDVAPLAQAQ CCCCCCCCEEEEECCCCEECCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEEEECHHHCCC AYRVQLAHDAGLLDLFRETRTGSPRAVFRDVPNGNYFVRVAAIDANGLEGRPRTYAFERR EEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCHHHHHHH MMGLDASASPGAGGYEFRWSPNGSGKDARYRFVLSRSKDLSAPVVDQVGLHTRQITVAHL HHCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHCCCCEEEEEEEEC PPGDYFWAVTVEEFEGGKFYEKTSPVSAFTLSR CCCCEEEEEEEEECCCCEEEECCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA