Click here to switch to the map view.

The map label for this gene is ywbI [H]

Identifier: 78065977

GI number: 78065977

Start: 1471870

End: 1472742

Strand: Reverse

Name: ywbI [H]

Synonym: Bcep18194_A4506

Alternate gene names: 78065977

Gene position: 1472742-1471870 (Counterclockwise)

Preceding gene: 78065980

Following gene: 78065971

Centisome position: 39.87

GC content: 69.3

Gene sequence:

>873_bases
ATGATCCGCGAACTGAAAACCCTCGTCGCCGTCGCCCGGGAAGGCACGTTCGCCGCGGCCGGCAACCGTATCGGGCTCAC
GCAGGCGGCCGTGAGCGCGCAGATGCAGCGCCTCGAAGCCGAGCTCGGCTTCGCGCTGTTCGACCGGCAAGGCCGGTCGG
CCCGGCTCAACGAGATGGGTCATCACGTGCTCGACCAAGCGCAGGCGCTGATCGGCCTGTACGAGAACCTGAGCTCGACC
GCGCCCGGTTCGCCGGCCACCGCGCGTGTGACGATCGGCGCGATCGCATCGGTACAGAGCGCGCTGCTGCCGGCCGCACT
CGCCGATTTCCATCGCCGGCATCCCGCGTGCCGCACGCGCGTGATTCCGGGGCTGTCGATCGAACTGGTCAACCGGGTGG
ATGCGGGCGAGATCGACATGGCCGCGATCATCCGGCCGCCGTTTTCGCTGCAGAGCGACCTGCACTGGACGACGCTGGTG
CAGGAACCGTTCCGGCTGATCGTGCCGCGCAGCGTGAAAGGCAAGGACTGGGCCGACCTGCTCGCGAGCGAGCCGTTCGT
GCGCTACGACCGCGCGTCGTTCGGCGGCCGCCAGGTCGATCGTTTTCTGAGGAAGATGCACATCGCGGTGCGCGACACCT
GCGAACTCGACGAGCTCGACGCGATCGTCAAGCTGGTCGAGAACGGCGTCGGCGTCGCGATCGTCCCGCAGACCGCCGTG
TATCGCCGCTGGCCGGCCAGCGTGCGCGCGATCGACCTCGGGCATCACACGTTCCACCGCGACATCGGGCTCGTGCATCG
CGCGCGGCGCACGATGTCGGAGCCGGCGCAGATGCTCGCGCAGCTGATCGAAGCGGCGGCGCAGGCGGCCTAG

Upstream 100 bases:

>100_bases
ATGGAACGCTCGCGTGGCGCGAGGACGGCACCATGGTAGTCAAGGTCAAGCAGAAATTAAATCAATATATAGTTGCGTCA
TTCACAAACGGAATTGATGA

Downstream 100 bases:

>100_bases
TGGCCCAGGGCCGCCGCTGCCAATCAGCGCCGGCCGGCCGCCCAGTCGACGGCCGCGTCGAACAGCGCGACACCGGCCGG
CGACAGGTTCACGAACGTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNEMGHHVLDQAQALIGLYENLSST
APGSPATARVTIGAIASVQSALLPAALADFHRRHPACRTRVIPGLSIELVNRVDAGEIDMAAIIRPPFSLQSDLHWTTLV
QEPFRLIVPRSVKGKDWADLLASEPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAV
YRRWPASVRAIDLGHHTFHRDIGLVHRARRTMSEPAQMLAQLIEAAAQAA

Sequences:

>Translated_290_residues
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNEMGHHVLDQAQALIGLYENLSST
APGSPATARVTIGAIASVQSALLPAALADFHRRHPACRTRVIPGLSIELVNRVDAGEIDMAAIIRPPFSLQSDLHWTTLV
QEPFRLIVPRSVKGKDWADLLASEPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAV
YRRWPASVRAIDLGHHTFHRDIGLVHRARRTMSEPAQMLAQLIEAAAQAA
>Mature_290_residues
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNEMGHHVLDQAQALIGLYENLSST
APGSPATARVTIGAIASVQSALLPAALADFHRRHPACRTRVIPGLSIELVNRVDAGEIDMAAIIRPPFSLQSDLHWTTLV
QEPFRLIVPRSVKGKDWADLLASEPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAV
YRRWPASVRAIDLGHHTFHRDIGLVHRARRTMSEPAQMLAQLIEAAAQAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=297, Percent_Identity=26.5993265993266, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787806, Length=237, Percent_Identity=21.9409282700422, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=23.5294117647059, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787601, Length=145, Percent_Identity=26.8965517241379, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787879, Length=252, Percent_Identity=26.5873015873016, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788481, Length=251, Percent_Identity=26.6932270916335, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790262, Length=195, Percent_Identity=29.2307692307692, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788887, Length=169, Percent_Identity=27.810650887574, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790208, Length=262, Percent_Identity=27.4809160305344, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=140, Percent_Identity=28.5714285714286, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788626, Length=158, Percent_Identity=31.6455696202532, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31797; Mature: 31797

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNEMG
CHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
HHVLDQAQALIGLYENLSSTAPGSPATARVTIGAIASVQSALLPAALADFHRRHPACRTR
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VIPGLSIELVNRVDAGEIDMAAIIRPPFSLQSDLHWTTLVQEPFRLIVPRSVKGKDWADL
CCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
LASEPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAV
HHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCHHH
YRRWPASVRAIDLGHHTFHRDIGLVHRARRTMSEPAQMLAQLIEAAAQAA
HHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIRELKTLVAVAREGTFAAAGNRIGLTQAAVSAQMQRLEAELGFALFDRQGRSARLNEMG
CHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
HHVLDQAQALIGLYENLSSTAPGSPATARVTIGAIASVQSALLPAALADFHRRHPACRTR
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
VIPGLSIELVNRVDAGEIDMAAIIRPPFSLQSDLHWTTLVQEPFRLIVPRSVKGKDWADL
CCCCCHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHH
LASEPFVRYDRASFGGRQVDRFLRKMHIAVRDTCELDELDAIVKLVENGVGVAIVPQTAV
HHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEECCCHHH
YRRWPASVRAIDLGHHTFHRDIGLVHRARRTMSEPAQMLAQLIEAAAQAA
HHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]