| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is yjeA [H]
Identifier: 78050040
GI number: 78050040
Start: 5173070
End: 5175772
Strand: Reverse
Name: yjeA [H]
Synonym: XCV4484
Alternate gene names: 78050040
Gene position: 5175772-5173070 (Counterclockwise)
Preceding gene: 78050041
Following gene: 78050039
Centisome position: 99.95
GC content: 63.97
Gene sequence:
>2703_bases GTGACCACATCGCCGTTGCATCGCCTGTTGCTGTGCGCAAGTTGCGTGGGAGTGCTGGCGTTGGCCGGCTGCGGCACGCA GGACGCCAGCGATGCTGCCGGCGCTGCGAAGCCCGCGGCTGCAACGAGCGCTGGCACGCAGGCGGACAAGACCGGGAACG CCACCGGTGCATTGATCGCTCAACTGCGCGAACAGCTGGACCGGCACCGCCGCATCATCGTGCTGCTGGCCGATGAGGAC AAACAAACGCCACGCGATCGCGCCACCTCCAGCAGCGTGGGCCAGCAGTTGTTTCACGAAAACCTGGAGCAGCGCGAACG CATTGCCGCATCGTTGGACACGATTCTGGCTTCCAAGGATGCACGCCGGTTCGCGACGATTTCCGCAGTGCTGGACGAGG TGGAATCTGCGTCGGATCTGTTCGATGCCGACCGCCTGGCATTTGCCGAGGTGCTGCGCGATCTGCATGCGCGCATCGGC CGCGACTCTGCATTGCCGGCGGTGAAACTGCATCAGCGCATCGGCGAGGATCTGGAGGCGCTGGACGAGATCGAGCGCAG CTACAACAAGGAGTTGACGCAGATCTTCAGCCGTTTCGATCGCAGCCGCGCCATCGTGCCCAAGCGCGAGAAATGGGGCG ACTACGTGGCGCAGTTGCGCACGCTCTATACGCGCGAGAACATCCTGCGCGACCATGGCGTGGTCGAGCCGTACCCGTTC GCCGCGCGCGACAGCGACAGCGAAGTGTTCGGCCGCGACCTGCCGCCCAAGACAGTGGTGCTCACCTTCGACGATGGCCC GCACAAGGCCTACACCGAAGAGATCGTGGCGATTCTCAAGCGCTACGATGTGCCCGGCGTGTTCTTCGAAGTGGGGCGCA ACCTCGGCAGCCTGGATGCCAACGGCAAACCGCAACTTGCGCCGCTGTCGAAGATCAGTCATTCGCTGATGGAAGAAGGC TATGCGGTGGGGAACCACAGCCTCACCCACGCACAGTTGTCCAAGACCACCGGCGATGCACTGCGTCGCCAGGTTCTGGA TACCGACACCTTGCTGCGTGCAGTGGACGACAAGCGCGCGCCGCTGTTCCGGTTTCCGTATGGCGCACGCAATGCGGAAG GCTTGCAGCTGCTGGGCGAAGCCGGCCTGAAATCGATCATGTGGAACATCGACTCGCTGGACTGGGCCGATCCGGTGCCG GAATCCATCGTGCAACGCGTGCTCGATCAAGTGAACAAGGACCAGCGCGGCATCGTGCTGTTTCATGACATCCACGACCG CGCAGTGAAGGCGCTGCCGCAGATTCTGGATCGTCTCATCGCCGACGGTTACCAGTTCGCCGGCTGGAATGGCCGCGAGT TCTCGGTCGCGCGCGCACCCGGCGCGGCGGCCGATGCCACGGTGACCACCGGCTATGCGAAATCGTGGGCGATCGTGATC GGCATCGACGACTACGCGCATTGGCCCAAGCTGGACTATGCGGCCAACGATGCGCAGGCGATTGCCAGTACCCTGACCGG GCCGTTGGGGTTTCCGTCCTCGCAAGTGATCGTGCTCAAGGACGGGCAGGCCACGCGCAACAATATCCTGGCCGCATTCC ACGACCGCCTCGGCGAAGGCCGTGCACAAACCAACGACCGCGTGTTCGTGTTCTTTGCCGGGCATGGCGCCACACGACGG CTCGCTTCCGGTCGCGATCTGGGTTACATCATTCCGGTCGACTCGGACCCGCAGCATCTGGCCAGCGATGCGATCGCAAT GAGCGATTTGCAGAACATCGCCGAAAGCCTGCAGGCCAAGCACGTCTTGTTCGTGATGGATGCGTGCTACAGCGGGCTGG GATTGACGCGCGGCGGGCCGACGTCCAGCGCGTATCTGCGCGAGAACGCGCGGCGTATCGCGCGCCAGATGCTCACCGCC GGCGGCGCCGATCAACAGGTGGCCGATAGCGGGCCCAATGGGCATTCGGTGTTCACCTGGGTGCTGTTGCAGGCATTGGC TGGCAAGGGCGACCTCAATGGCGATGGCTTGATCACCGGAACCGAACTGGCCGCGTACGTGGCGCCCGCGGTGTCGGCAG TCTCGGCGCAGACGCCGGCATTCGGCAGCCTGCCCGGTTCGCAAGGCGGCGAATTCGTGTTCCAGGTTCCCAGCGGCGAA GAATTTCTCACTGCGCAGACCGCGCAGCTGTCGGCCGATGCGATTGCGCTCAACTCACGTGTGGACGCAGCGCGCCCTGT GCCGGCCGCAGCCGGTGTGGCAGTGGCTGCAGTGCCGGTGACGGTGAAGACACTGCAAGGTGGCCAGGCCACGCTGGTGT TGCCCACCGCAGCGAAGAGCAGCGATCGCCAACGTGCACAACTGGCCAACGAACGCGGCCTGCAGTTGTACAAGGAAAAG CGCTATGCCGATGCGGCCGAGCAATTTGCCGAGGCACTGAAGCTGCGTCCGGATTTCGCGCTGGCGGCCAACAACCTGGG CTTTGTGTATTACCGTCAGGGGCGCTTTGCCGAATCGGCGCGCTGGCTGGAAAATACCTTGAAGATCGATCCCTCGCGCG CGGTGGCCTATCTCAATCTCGGCGATGCATATGCCAAGGCAGGCGATCGCGACAAGGCGCGCAAGGCCTATGCCACCTAC CTGGAATTGCAGCCGCAAGGCAGTGGTGCCGAGCAGGCGCGCGCACAGCTGCAATCGTTGTGA
Upstream 100 bases:
>100_bases GCCAACGCCAAGTAAGTTCAAGAAGGCCCGCCGCAAGGCGGGCTTTCTGCATGTCAGCCCGCATTGAGTGCCTGTTGTCT CTTTCGCCAAGGACGCCGTC
Downstream 100 bases:
>100_bases CCGGACGCGCGACACGACATGGCGTGCAGACGCCAGACAGCGCGGATGTCGTCATGGGAGGTGATTCAAAAGTGCCCGCA AATATGTGGGTCGGCGTTGT
Product: polysaccharide deacetylase precursor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MTTSPLHRLLLCASCVGVLALAGCGTQDASDAAGAAKPAAATSAGTQADKTGNATGALIAQLREQLDRHRRIIVLLADED KQTPRDRATSSSVGQQLFHENLEQRERIAASLDTILASKDARRFATISAVLDEVESASDLFDADRLAFAEVLRDLHARIG RDSALPAVKLHQRIGEDLEALDEIERSYNKELTQIFSRFDRSRAIVPKREKWGDYVAQLRTLYTRENILRDHGVVEPYPF AARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSLDANGKPQLAPLSKISHSLMEEG YAVGNHSLTHAQLSKTTGDALRRQVLDTDTLLRAVDDKRAPLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVP ESIVQRVLDQVNKDQRGIVLFHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVARAPGAAADATVTTGYAKSWAIVI GIDDYAHWPKLDYAANDAQAIASTLTGPLGFPSSQVIVLKDGQATRNNILAAFHDRLGEGRAQTNDRVFVFFAGHGATRR LASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTA GGADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGE EFLTAQTAQLSADAIALNSRVDAARPVPAAAGVAVAAVPVTVKTLQGGQATLVLPTAAKSSDRQRAQLANERGLQLYKEK RYADAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESARWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYATY LELQPQGSGAEQARAQLQSL
Sequences:
>Translated_900_residues MTTSPLHRLLLCASCVGVLALAGCGTQDASDAAGAAKPAAATSAGTQADKTGNATGALIAQLREQLDRHRRIIVLLADED KQTPRDRATSSSVGQQLFHENLEQRERIAASLDTILASKDARRFATISAVLDEVESASDLFDADRLAFAEVLRDLHARIG RDSALPAVKLHQRIGEDLEALDEIERSYNKELTQIFSRFDRSRAIVPKREKWGDYVAQLRTLYTRENILRDHGVVEPYPF AARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSLDANGKPQLAPLSKISHSLMEEG YAVGNHSLTHAQLSKTTGDALRRQVLDTDTLLRAVDDKRAPLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVP ESIVQRVLDQVNKDQRGIVLFHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVARAPGAAADATVTTGYAKSWAIVI GIDDYAHWPKLDYAANDAQAIASTLTGPLGFPSSQVIVLKDGQATRNNILAAFHDRLGEGRAQTNDRVFVFFAGHGATRR LASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTA GGADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGE EFLTAQTAQLSADAIALNSRVDAARPVPAAAGVAVAAVPVTVKTLQGGQATLVLPTAAKSSDRQRAQLANERGLQLYKEK RYADAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESARWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYATY LELQPQGSGAEQARAQLQSL >Mature_899_residues TTSPLHRLLLCASCVGVLALAGCGTQDASDAAGAAKPAAATSAGTQADKTGNATGALIAQLREQLDRHRRIIVLLADEDK QTPRDRATSSSVGQQLFHENLEQRERIAASLDTILASKDARRFATISAVLDEVESASDLFDADRLAFAEVLRDLHARIGR DSALPAVKLHQRIGEDLEALDEIERSYNKELTQIFSRFDRSRAIVPKREKWGDYVAQLRTLYTRENILRDHGVVEPYPFA ARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSLDANGKPQLAPLSKISHSLMEEGY AVGNHSLTHAQLSKTTGDALRRQVLDTDTLLRAVDDKRAPLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVPE SIVQRVLDQVNKDQRGIVLFHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVARAPGAAADATVTTGYAKSWAIVIG IDDYAHWPKLDYAANDAQAIASTLTGPLGFPSSQVIVLKDGQATRNNILAAFHDRLGEGRAQTNDRVFVFFAGHGATRRL ASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTAG GADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGEE FLTAQTAQLSADAIALNSRVDAARPVPAAAGVAVAAVPVTVKTLQGGQATLVLPTAAKSSDRQRAQLANERGLQLYKEKR YADAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESARWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYATYL ELQPQGSGAEQARAQLQSL
Specific function: May Be Involved In Cell Division. Overexpression Of Nlpi Results In The Loss Of The Rod Morphology And The Formation Of Single Prolate Ellipsoids And Pairs Of Prolate Ellipsoids Joined By Partial Constrictions. [C]
COG id: COG4249
COG function: function code R; Uncharacterized protein containing caspase domain
Gene ontology:
Cell location: Attached To The Membrane By A Lipid Anchor [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide deacetylase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6323339, Length=186, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021729 - InterPro: IPR011330 - InterPro: IPR017219 - InterPro: IPR002509 [H]
Pfam domain/function: PF11738 DUF3298; PF01522 Polysacc_deac_1 [H]
EC number: NA
Molecular weight: Translated: 97183; Mature: 97052
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS00018 EF_HAND_1 ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSPLHRLLLCASCVGVLALAGCGTQDASDAAGAAKPAAATSAGTQADKTGNATGALIA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHH QLREQLDRHRRIIVLLADEDKQTPRDRATSSSVGQQLFHENLEQRERIAASLDTILASKD HHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH ARRFATISAVLDEVESASDLFDADRLAFAEVLRDLHARIGRDSALPAVKLHQRIGEDLEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH LDEIERSYNKELTQIFSRFDRSRAIVPKREKWGDYVAQLRTLYTRENILRDHGVVEPYPF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSLDA CCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC NGKPQLAPLSKISHSLMEEGYAVGNHSLTHAQLSKTTGDALRRQVLDTDTLLRAVDDKRA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVPESIVQRVLDQVNKDQRGIVL CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE FHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVARAPGAAADATVTTGYAKSWAIVI EECHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEECCCCCCCCCEEECCCCCCEEEEE GIDDYAHWPKLDYAANDAQAIASTLTGPLGFPSSQVIVLKDGQATRNNILAAFHDRLGEG EECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC RAQTNDRVFVFFAGHGATRRLASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAK CCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH HVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTAGGADQQVADSGPNGHSVFTW HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHH VLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGE HHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC EFLTAQTAQLSADAIALNSRVDAARPVPAAAGVAVAAVPVTVKTLQGGQATLVLPTAAKS CHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCEEECEEEEEECCCCEEEEEECCCCC SDRQRAQLANERGLQLYKEKRYADAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHH RWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYATYLELQPQGSGAEQARAQLQSL HHHHHHHEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHCC >Mature Secondary Structure TTSPLHRLLLCASCVGVLALAGCGTQDASDAAGAAKPAAATSAGTQADKTGNATGALIA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHH QLREQLDRHRRIIVLLADEDKQTPRDRATSSSVGQQLFHENLEQRERIAASLDTILASKD HHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH ARRFATISAVLDEVESASDLFDADRLAFAEVLRDLHARIGRDSALPAVKLHQRIGEDLEA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH LDEIERSYNKELTQIFSRFDRSRAIVPKREKWGDYVAQLRTLYTRENILRDHGVVEPYPF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AARDSDSEVFGRDLPPKTVVLTFDDGPHKAYTEEIVAILKRYDVPGVFFEVGRNLGSLDA CCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC NGKPQLAPLSKISHSLMEEGYAVGNHSLTHAQLSKTTGDALRRQVLDTDTLLRAVDDKRA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVPESIVQRVLDQVNKDQRGIVL CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE FHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVARAPGAAADATVTTGYAKSWAIVI EECHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEECCCCCCCCCEEECCCCCCEEEEE GIDDYAHWPKLDYAANDAQAIASTLTGPLGFPSSQVIVLKDGQATRNNILAAFHDRLGEG EECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC RAQTNDRVFVFFAGHGATRRLASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAK CCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH HVLFVMDACYSGLGLTRGGPTSSAYLRENARRIARQMLTAGGADQQVADSGPNGHSVFTW HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHH VLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGE HHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC EFLTAQTAQLSADAIALNSRVDAARPVPAAAGVAVAAVPVTVKTLQGGQATLVLPTAAKS CHHHHHHHHHCHHHEEECCCCCCCCCCCCCCCCCCEEECEEEEEECCCCEEEEEECCCCC SDRQRAQLANERGLQLYKEKRYADAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHH RWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYATYLELQPQGSGAEQARAQLQSL HHHHHHHEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579062; 9384377 [H]