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The map label for this gene is yidC [H]

Identifier: 78050041

GI number: 78050041

Start: 5175858

End: 5177582

Strand: Reverse

Name: yidC [H]

Synonym: XCV4485

Alternate gene names: 78050041

Gene position: 5177582-5175858 (Counterclockwise)

Preceding gene: 78050042

Following gene: 78050040

Centisome position: 99.98

GC content: 66.26

Gene sequence:

>1725_bases
ATGAACCAGACCCGTGTTTTCCTGATTTTTGCCTGGCTGATGGTCGCGGCGTTGCTGTGGATGGAGTGGGGCAAGGACAA
GGCGGCTGCCAATGCGCCGGTGGCCGCGGCCACCCAGGCGGTGCCGGCGGCGCGCGATCCGGATGCGGCAGCGCCGAGCG
CGGCCAATGTGCCTTCGGCCCAGCCCATTCCGCAGGCCGGCGCGCCGGGCACGGTGCCGGCGACCAGCAGCACTGCGGCA
ACACCGGCCGCTGCCGGCGCTGCGCCGGTGGTGACCCTGACCTCGGATGTGCTGCGCCTGAAGCTGGATGGCCGCAGCGT
GCTCGATGCCGAGCTGCTGCAATTCCCGCAGACCAAGGACGGCACCGAGCCGGTCAGCCTGCTGACCGAAGATCCGGCGC
ACCCGTATAACGCCACCAGCGGCTGGGCCAGCGAGCATTCGCCGGTGCCGGGTGTAGGCGGCTTCCGCGCCGAGCAGCCG
GGCACGACGTTCGAAATGGCCAAGGGCCAGAACACGCTGGTGGTGCCGTTCGTCTGGAATGGCCCCGACGGCGTCTCGAT
CCGTCGCACCTTTACCCTGGAGCGCGGCCGCTATGCCATCTCGATCAAGGACGAGGTGATCAACAAGAGTGGCGCGCCGT
GGAACGGCTACGTGTTCCGGAAGCTGAGCCGGGTGCCGACCATCCTCAGCCGCGGCATGACCAATCCGGATTCCTTCAGC
TTCAATGGCGCGACCTGGTACAGCCCGCAGGAAGGCTACGAGCGCCGCGCGTTCAAGGACTACATGGACGACGGCGGCCT
GAATCGCCAGATCACCGGCGGCTGGGTAGCGCTGCTGCAGCACCACTTCTTCACCGCGTGGATTCCGCAGAAGGACCAAG
CCTCGCTGTACGTGCTGGCCCAGGACGGCCCGCGCGACGTGGCCGAGCTGCGCGGCCCGGCCTTCACCGTGGCACCTGGC
CAGACCGCCAGCACCGAAGCGCGCCTGTGGGTAGGCCCGAAGCTGGTCAACCTGATCGCCAAGGAAGACGTCAAGGGCCT
GGACCGCGTGGTCGATTACAGCCGCTTCTCGATCATGGCCATCATCGGCCAGGGCCTGTTCTGGGTGCTGAGCCATCTGC
ACAGCTTCCTGCACAACTGGGGCTGGGCCATCATCGGCCTGGTGGTCCTGCTGCGCCTGGCGCTGTATCCGCTGTCGGCT
GCCCAGTACAAGTCCGGTGCCAAGATGCGCCGCTTCCAGCCGCGCCTGGCGCAGCTCAAGGAGCGCTACGGCGACGATCG
CGTCAAGTACCAGCAGGCGACGATGGAGCTGTTCAAGAAGGAAAAGATCAACCCGATGGGCGGCTGCCTGCCGCTGCTGA
TCCAGATGCCGATCTTCTTCGCGCTGTACTGGGTGCTGGTGGAGTCGGTGGAACTGCGTCAGGCGCCGTGGCTGGGCTGG
ATCCAGGATCTGACTGCGCGCGACCCGTACTTCATCCTGCCGCTGCTCAACATCTCGATCATGTGGGCGACGCAGAAGCT
GACCCCGACCCCGGGCATGGACCCGATGCAGGCCAAGATGATGCAGTTCATGCCGCTGGTGTTCGGCGTCATGATGGCCT
TCATGCCGGCCGGCCTGGTGCTGTACTGGGTGGTCAACGGCGGGCTGGGCCTGTTGATCCAGTGGTGGATGATCCGCCAG
CACGGCGAGAAGCCGAGCAAGATCATCCAGGCCAACGCCAAGTAA

Upstream 100 bases:

>100_bases
GCTGCGCCCGGCACAATGCCGCCCGCCAGGACGGTGCGCCCATCCTCCCCTTCCCCGACAGAGCCGGAACTGTAGTTCCG
ACTGAGCGAGTTGCTGCCCG

Downstream 100 bases:

>100_bases
GTTCAAGAAGGCCCGCCGCAAGGCGGGCTTTCTGCATGTCAGCCCGCATTGAGTGCCTGTTGTCTCTTTCGCCAAGGACG
CCGTCGTGACCACATCGCCG

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MNQTRVFLIFAWLMVAALLWMEWGKDKAAANAPVAAATQAVPAARDPDAAAPSAANVPSAQPIPQAGAPGTVPATSSTAA
TPAAAGAAPVVTLTSDVLRLKLDGRSVLDAELLQFPQTKDGTEPVSLLTEDPAHPYNATSGWASEHSPVPGVGGFRAEQP
GTTFEMAKGQNTLVVPFVWNGPDGVSIRRTFTLERGRYAISIKDEVINKSGAPWNGYVFRKLSRVPTILSRGMTNPDSFS
FNGATWYSPQEGYERRAFKDYMDDGGLNRQITGGWVALLQHHFFTAWIPQKDQASLYVLAQDGPRDVAELRGPAFTVAPG
QTASTEARLWVGPKLVNLIAKEDVKGLDRVVDYSRFSIMAIIGQGLFWVLSHLHSFLHNWGWAIIGLVVLLRLALYPLSA
AQYKSGAKMRRFQPRLAQLKERYGDDRVKYQQATMELFKKEKINPMGGCLPLLIQMPIFFALYWVLVESVELRQAPWLGW
IQDLTARDPYFILPLLNISIMWATQKLTPTPGMDPMQAKMMQFMPLVFGVMMAFMPAGLVLYWVVNGGLGLLIQWWMIRQ
HGEKPSKIIQANAK

Sequences:

>Translated_574_residues
MNQTRVFLIFAWLMVAALLWMEWGKDKAAANAPVAAATQAVPAARDPDAAAPSAANVPSAQPIPQAGAPGTVPATSSTAA
TPAAAGAAPVVTLTSDVLRLKLDGRSVLDAELLQFPQTKDGTEPVSLLTEDPAHPYNATSGWASEHSPVPGVGGFRAEQP
GTTFEMAKGQNTLVVPFVWNGPDGVSIRRTFTLERGRYAISIKDEVINKSGAPWNGYVFRKLSRVPTILSRGMTNPDSFS
FNGATWYSPQEGYERRAFKDYMDDGGLNRQITGGWVALLQHHFFTAWIPQKDQASLYVLAQDGPRDVAELRGPAFTVAPG
QTASTEARLWVGPKLVNLIAKEDVKGLDRVVDYSRFSIMAIIGQGLFWVLSHLHSFLHNWGWAIIGLVVLLRLALYPLSA
AQYKSGAKMRRFQPRLAQLKERYGDDRVKYQQATMELFKKEKINPMGGCLPLLIQMPIFFALYWVLVESVELRQAPWLGW
IQDLTARDPYFILPLLNISIMWATQKLTPTPGMDPMQAKMMQFMPLVFGVMMAFMPAGLVLYWVVNGGLGLLIQWWMIRQ
HGEKPSKIIQANAK
>Mature_574_residues
MNQTRVFLIFAWLMVAALLWMEWGKDKAAANAPVAAATQAVPAARDPDAAAPSAANVPSAQPIPQAGAPGTVPATSSTAA
TPAAAGAAPVVTLTSDVLRLKLDGRSVLDAELLQFPQTKDGTEPVSLLTEDPAHPYNATSGWASEHSPVPGVGGFRAEQP
GTTFEMAKGQNTLVVPFVWNGPDGVSIRRTFTLERGRYAISIKDEVINKSGAPWNGYVFRKLSRVPTILSRGMTNPDSFS
FNGATWYSPQEGYERRAFKDYMDDGGLNRQITGGWVALLQHHFFTAWIPQKDQASLYVLAQDGPRDVAELRGPAFTVAPG
QTASTEARLWVGPKLVNLIAKEDVKGLDRVVDYSRFSIMAIIGQGLFWVLSHLHSFLHNWGWAIIGLVVLLRLALYPLSA
AQYKSGAKMRRFQPRLAQLKERYGDDRVKYQQATMELFKKEKINPMGGCLPLLIQMPIFFALYWVLVESVELRQAPWLGW
IQDLTARDPYFILPLLNISIMWATQKLTPTPGMDPMQAKMMQFMPLVFGVMMAFMPAGLVLYWVVNGGLGLLIQWWMIRQ
HGEKPSKIIQANAK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI223718097, Length=212, Percent_Identity=26.4150943396226, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1790140, Length=575, Percent_Identity=36.8695652173913, Blast_Score=344, Evalue=8e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019998
- InterPro:   IPR001708 [H]

Pfam domain/function: PF02096 60KD_IMP [H]

EC number: NA

Molecular weight: Translated: 63365; Mature: 63365

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTRVFLIFAWLMVAALLWMEWGKDKAAANAPVAAATQAVPAARDPDAAAPSAANVPSA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
QPIPQAGAPGTVPATSSTAATPAAAGAAPVVTLTSDVLRLKLDGRSVLDAELLQFPQTKD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCC
GTEPVSLLTEDPAHPYNATSGWASEHSPVPGVGGFRAEQPGTTFEMAKGQNTLVVPFVWN
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEC
GPDGVSIRRTFTLERGRYAISIKDEVINKSGAPWNGYVFRKLSRVPTILSRGMTNPDSFS
CCCCCEEEEEEEEECCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
FNGATWYSPQEGYERRAFKDYMDDGGLNRQITGGWVALLQHHFFTAWIPQKDQASLYVLA
CCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCEEEEE
QDGPRDVAELRGPAFTVAPGQTASTEARLWVGPKLVNLIAKEDVKGLDRVVDYSRFSIMA
CCCCHHHHHHCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIGQGLFWVLSHLHSFLHNWGWAIIGLVVLLRLALYPLSAAQYKSGAKMRRFQPRLAQLK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
ERYGDDRVKYQQATMELFKKEKINPMGGCLPLLIQMPIFFALYWVLVESVELRQAPWLGW
HHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IQDLTARDPYFILPLLNISIMWATQKLTPTPGMDPMQAKMMQFMPLVFGVMMAFMPAGLV
HHHHCCCCCEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE
LYWVVNGGLGLLIQWWMIRQHGEKPSKIIQANAK
EEHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCC
>Mature Secondary Structure
MNQTRVFLIFAWLMVAALLWMEWGKDKAAANAPVAAATQAVPAARDPDAAAPSAANVPSA
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
QPIPQAGAPGTVPATSSTAATPAAAGAAPVVTLTSDVLRLKLDGRSVLDAELLQFPQTKD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEECCCHHHHHHHHHCCCCCC
GTEPVSLLTEDPAHPYNATSGWASEHSPVPGVGGFRAEQPGTTFEMAKGQNTLVVPFVWN
CCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEC
GPDGVSIRRTFTLERGRYAISIKDEVINKSGAPWNGYVFRKLSRVPTILSRGMTNPDSFS
CCCCCEEEEEEEEECCEEEEEEHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
FNGATWYSPQEGYERRAFKDYMDDGGLNRQITGGWVALLQHHFFTAWIPQKDQASLYVLA
CCCEEECCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCCCEEEEE
QDGPRDVAELRGPAFTVAPGQTASTEARLWVGPKLVNLIAKEDVKGLDRVVDYSRFSIMA
CCCCHHHHHHCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIGQGLFWVLSHLHSFLHNWGWAIIGLVVLLRLALYPLSAAQYKSGAKMRRFQPRLAQLK
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
ERYGDDRVKYQQATMELFKKEKINPMGGCLPLLIQMPIFFALYWVLVESVELRQAPWLGW
HHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IQDLTARDPYFILPLLNISIMWATQKLTPTPGMDPMQAKMMQFMPLVFGVMMAFMPAGLV
HHHHCCCCCEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE
LYWVVNGGLGLLIQWWMIRQHGEKPSKIIQANAK
EEHHHHCCHHHHHHHHHHHHCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA