| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is sppA [H]
Identifier: 78049494
GI number: 78049494
Start: 4519167
End: 4521068
Strand: Reverse
Name: sppA [H]
Synonym: XCV3938
Alternate gene names: 78049494
Gene position: 4521068-4519167 (Counterclockwise)
Preceding gene: 78049495
Following gene: 78049492
Centisome position: 87.31
GC content: 66.3
Gene sequence:
>1902_bases ATGAACCACCCCGTGCGTCGCAATCCCATCGCCAGCTTCTTCGTCGGCCTGTGGGATGTGATGAATTTCACCCGGCGCCT GATTTTCAACCTGGTGTTCTTCGGTTTCCTGTTCCTGCTGCTGCTGGTGTTCGTGGTGGCGCTGGCGCGTGGCGATGGCA CCAAGCCGCTGGCCGAGCGCACCACCCTGGTGATCAACCCGGAAGGCACGCTGGTCGAACAATTCAGTGCCGACCCGGTC AGCCGGTCGCTGGCCAAGGCGGTCGGCGACAAGAGCGCCGAAGAAGTGCAACTGCGCGACCTGGTGCGCGTGATCGAGGC GGCGGGCAAGGACCGCAAGATCGAGCGCGTGCTGTTGAACCTGGACAAGCTGCAACCGTCCGGATTTGCTTCCCAACGCG AAGTGGCCGTCGCATTGCAGAAGTTGCGCGCCTCCGGCAAGCAGATCGTGGCCTTCAGCGAGAGCATGAGCCAGGGCCAG TACCTGCTCGCCGCACAGGCCAACGAGGTGTATCTGGACCCGATGGGCAGCGTGTTGCTGGAAGGCCTTGGCCGCTATCG CCAGTACTTCCGCGAAGGCCTGCAGGACAAGCTCGGCGTGGACGTGCATCTGTTCCGCGTCGGCGAGTACAAGTCTGCAG CCGAGCCGTACATCCTGGACGCGGCCTCGGCCGATGCCAAGGAAGCGGATTTGTTCTGGATGAACGATGTGTGGCATCGC TATCTGGCCGACGTGGGCACCGCGCGCAAGCTGAGCCCGGCGCAGCTGGCTGCCGGCATCGACACGCTGCCCGAAGGCGT GGCCGCCGCCGGTGGCGACCTCGCCAAGTTCGCGCTGCAACAGAAGCTGGTGGACGGGCTCAAGACGCGCGAAGAAGTCG ATGCGCTGCTGGTCAAGCGCGGTGTGGCCGACAGCGATGCCGACAGCGGTTTCCGCAATATCGGGTTCAACGATTATCTG AGCCAGCTGCAGGCGCAGCGTTCGCCGATGGACAGTCGCCCGCAGGTGGCGGTGGTCGTGGCGGCGGGCGAGATCAGCGG TGGCGAACAGCCGGCCGGACGCATCGGTGGCGAGTCTACGGCGGCGCTGTTGCGCCAGGCGCGCGACGACGAGGAAGTGA AGGCGGTGGTGCTGCGCGTGGATTCGCCCGGTGGCGAAGTCTTCGCCTCCGAGCAGATCCGCCGCGAAGTGGTTGCGCTC AAGCAGGCCGGCAAGCCGGTGGTGGTGTCGATGGGCGATCTGGCCGCGTCCGGCGGTTACTGGATCAGCATGAATGCCGA TCGCATCTACGCCGACCCGTCGACCATCAGCGGCTCCATCGGCATCTTCGGCATGGTGCCGAACCTGACCCGCGCGCTGG ACAAGATCGGCGTGCACACCGACGGCGTGGCCACCACGCGGTTCGCCGGTGCGTTCGACATCACCCGTCCGCTGGATCCG GCTGCCGGCCAGGTCATCCAGGCGGTGATCAACAAGGGCTACGCCGACTTCACCGGCAAGGTGGCGCAGGCGCGTCACCA GTCGGTGGAGGCGATCGACAAGGTGGCGCGTGGCCGTGTGTGGAGCGGCGCGCAGGCCAAGGAGCGTGGATTGGTGGATG CGTTCGGCGGCATGTCCGAAGCGGTCGCCGATGCGGCCGACCGCGCCAAGCTGAGCCGCGGCAAGTTCCGCGTGCGCTAT GTGGAAAAGCCGGCCACGCCGTTCTCGCAGTTCATGAGCGGGTTTGCCGGCAGCCGCATGGGCGCCTGGATGCTGAGCGA CTCGGGCATGGCGCGCGCGCTGCTGGCCCGCTCGTTGCCGGAAGTGGATACGCAGCTGCGCTTTGTCGAAAGCGCCGTGC ACGACAGCAAGGCAGGCGGCACGCCGGTCAAGTCGCTGGCCTACTGCTTCTGCGGGTTCTGA
Upstream 100 bases:
>100_bases CACCGTGACACCCTGACTTCCAGCGCATGCCGCGCGCGCTGCGCAGCCGGTATGCTGGGCACCATCGATCTGTATGCAGC GTCTTTCGACGGAGCTTTCC
Downstream 100 bases:
>100_bases CGCGTTGCGCTCAGTGCGCACTTGATGCATCGACAACGCCGGCCATGTGCCGGCGTTGTTGTGCGCGCGCGGATGATGCG GTGGTTTGAACGGCCGAACG
Product: protease IV
Products: NA
Alternate protein names: Endopeptidase IV; Protease IV; Signal peptide peptidase [H]
Number of amino acids: Translated: 633; Mature: 633
Protein sequence:
>633_residues MNHPVRRNPIASFFVGLWDVMNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQKLRASGKQIVAFSESMSQGQ YLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWHR YLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDADSGFRNIGFNDYL SQLQAQRSPMDSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFASEQIRREVVAL KQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVATTRFAGAFDITRPLDP AAGQVIQAVINKGYADFTGKVAQARHQSVEAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRY VEKPATPFSQFMSGFAGSRMGAWMLSDSGMARALLARSLPEVDTQLRFVESAVHDSKAGGTPVKSLAYCFCGF
Sequences:
>Translated_633_residues MNHPVRRNPIASFFVGLWDVMNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQKLRASGKQIVAFSESMSQGQ YLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWHR YLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDADSGFRNIGFNDYL SQLQAQRSPMDSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFASEQIRREVVAL KQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVATTRFAGAFDITRPLDP AAGQVIQAVINKGYADFTGKVAQARHQSVEAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRY VEKPATPFSQFMSGFAGSRMGAWMLSDSGMARALLARSLPEVDTQLRFVESAVHDSKAGGTPVKSLAYCFCGF >Mature_633_residues MNHPVRRNPIASFFVGLWDVMNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAERTTLVINPEGTLVEQFSADPV SRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLNLDKLQPSGFASQREVAVALQKLRASGKQIVAFSESMSQGQ YLLAAQANEVYLDPMGSVLLEGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWHR YLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKRGVADSDADSGFRNIGFNDYL SQLQAQRSPMDSRPQVAVVVAAGEISGGEQPAGRIGGESTAALLRQARDDEEVKAVVLRVDSPGGEVFASEQIRREVVAL KQAGKPVVVSMGDLAASGGYWISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVATTRFAGAFDITRPLDP AAGQVIQAVINKGYADFTGKVAQARHQSVEAIDKVARGRVWSGAQAKERGLVDAFGGMSEAVADAADRAKLSRGKFRVRY VEKPATPFSQFMSGFAGSRMGAWMLSDSGMARALLARSLPEVDTQLRFVESAVHDSKAGGTPVKSLAYCFCGF
Specific function: Digestion of the cleaved signal peptides. This activity is necessary to maintain proper secretion of mature proteins across the membrane [H]
COG id: COG0616
COG function: function code OU; Periplasmic serine proteases (ClpP class)
Gene ontology:
Cell location: Cell inner membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S49 family [H]
Homologues:
Organism=Escherichia coli, GI1788064, Length=626, Percent_Identity=41.6932907348243, Blast_Score=414, Evalue=1e-117, Organism=Escherichia coli, GI1787527, Length=256, Percent_Identity=30.078125, Blast_Score=84, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004634 - InterPro: IPR004635 - InterPro: IPR002142 [H]
Pfam domain/function: PF01343 Peptidase_S49 [H]
EC number: 3.4.21.-
Molecular weight: Translated: 68243; Mature: 68243
Theoretical pI: Translated: 8.17; Mature: 8.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHPVRRNPIASFFVGLWDVMNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAER CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC TTLVINPEGTLVEQFSADPVSRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLN EEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH LDKLQPSGFASQREVAVALQKLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLL HHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCEEEEECCCEEEECHHHHHHH EGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWHR HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCEEHHHHHHHH YLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKR HHHHCCCCCCCCHHHHHHCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVADSDADSGFRNIGFNDYLSQLQAQRSPMDSRPQVAVVVAAGEISGGEQPAGRIGGEST CCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHH AALLRQARDDEEVKAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGY HHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCE WISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVATTRFAGAFDITRPLDP EEEECCCEEEECCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCH AAGQVIQAVINKGYADFTGKVAQARHQSVEAIDKVARGRVWSGAQAKERGLVDAFGGMSE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCHHH AVADAADRAKLSRGKFRVRYVEKPATPFSQFMSGFAGSRMGAWMLSDSGMARALLARSLP HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCC EVDTQLRFVESAVHDSKAGGTPVKSLAYCFCGF HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MNHPVRRNPIASFFVGLWDVMNFTRRLIFNLVFFGFLFLLLLVFVVALARGDGTKPLAER CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHC TTLVINPEGTLVEQFSADPVSRSLAKAVGDKSAEEVQLRDLVRVIEAAGKDRKIERVLLN EEEEECCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH LDKLQPSGFASQREVAVALQKLRASGKQIVAFSESMSQGQYLLAAQANEVYLDPMGSVLL HHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCEEEEECCCEEEECHHHHHHH EGLGRYRQYFREGLQDKLGVDVHLFRVGEYKSAAEPYILDAASADAKEADLFWMNDVWHR HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEECCCCCCCCCCEEHHHHHHHH YLADVGTARKLSPAQLAAGIDTLPEGVAAAGGDLAKFALQQKLVDGLKTREEVDALLVKR HHHHCCCCCCCCHHHHHHCHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC GVADSDADSGFRNIGFNDYLSQLQAQRSPMDSRPQVAVVVAAGEISGGEQPAGRIGGEST CCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHH AALLRQARDDEEVKAVVLRVDSPGGEVFASEQIRREVVALKQAGKPVVVSMGDLAASGGY HHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCE WISMNADRIYADPSTISGSIGIFGMVPNLTRALDKIGVHTDGVATTRFAGAFDITRPLDP EEEECCCEEEECCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCH AAGQVIQAVINKGYADFTGKVAQARHQSVEAIDKVARGRVWSGAQAKERGLVDAFGGMSE HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCHHH AVADAADRAKLSRGKFRVRYVEKPATPFSQFMSGFAGSRMGAWMLSDSGMARALLARSLP HHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHCCC EVDTQLRFVESAVHDSKAGGTPVKSLAYCFCGF HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3522590; 9097039; 9278503; 7973728 [H]