BacMap

Definition	Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome.
Accession	NC_007508
Length	5,178,466

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The map label for this gene is trn2 [H]

Identifier: 78049492

GI number: 78049492

Start: 4517547

End: 4518323

Strand: Reverse

Name: trn2 [H]

Synonym: XCV3936

Alternate gene names: 78049492

Gene position: 4518323-4517547 (Counterclockwise)

Preceding gene: 78049494

Following gene: 78049482

Centisome position: 87.25

GC content: 65.25

Gene sequence:

>777_bases
GTGACAACGCACCGTTGGCGGCTGGATGGACAGACCGCCCTCATCACCGGCGCCAGTGCCGGGATTGGTCTTGCCATCGC
GCGCGAGCTGCTCGGCTTCGGTGCCGACCTGCTGATGGTGGCGCGCGATGCCGATGCCCTGGCGCAGGCGCGCGATGAGC
TTGCCGACGAGTTTCCCGAGCGCGAACTGCACGGGCTGGCCGCCGATGTCTCCGACGATGAAGAGCGCCGCGCGATCCTG
GATTGGGTGGAAGACCACGCCGACGGTCTGCATCTGCTGATCAACAACGCCGGCGGCAACGTGACCCGCGCCGCGATCGA
TTACACCGAAGACGAGTGGCGCGGCATCTTCGAAACCAACGTGTTTTCCGCATTCGAACTGTCGCGTTATGCGCACCCGT
TGCTGACGCAACACGCAGCCTCGGCCATCGTCAACGTCGGCAGCGTCTCGGGCATCACCCATGTGCGCAGCGGCGCGCCG
TACGGCATGACCAAGGCGGCGTTGCAGCAAATGACGCGCAACCTGGCGGTGGAGTGGGCCGAAGACGGCATCCGCGTCAA
CGCGGTGGCGCCGTGGTACATCCGTACCCGCCGCACCTCCGGTCCGTTGTCGGATCCGGACTACTACGAACAGGTCATCG
AACGCACGCCGATGCGCCGCATTGGCGAACCGGAAGAAGTTGCCGCGGCGGTGGGTTTTTTATGTCTGCCGGCTGCCAGT
TACATCACCGGCGAATGCATCGCCGTGGACGGCGGCTTCTTGCGCTACGGGTTCTAG

Upstream 100 bases:

>100_bases
TCTCATCTCAACGTGCATACCACGCTCTAACGCCCGGGCCACGCATGCGCGTCAACTGCGTTGCAGCGGCCGTTTCCTGC
GCTTTGAAGAGGATTACCAC

Downstream 100 bases:

>100_bases
CGCAGGCGACACATACTGCCTGGTTCCGAGTGGATGCGCATGGACGCAGAGCCGGCATGTTCATGCACCATGTTCATGCA
CCCGCCCATGCTGCGCGTCG

Product: tropinone reductase

Products: NA

Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MTTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPERELHGLAADVSDDEERRAIL
DWVEDHADGLHLLINNAGGNVTRAAIDYTEDEWRGIFETNVFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAP
YGMTKAALQQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS
YITGECIAVDGGFLRYGF

Sequences:

>Translated_258_residues
MTTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPERELHGLAADVSDDEERRAIL
DWVEDHADGLHLLINNAGGNVTRAAIDYTEDEWRGIFETNVFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAP
YGMTKAALQQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS
YITGECIAVDGGFLRYGF
>Mature_257_residues
TTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPERELHGLAADVSDDEERRAILD
WVEDHADGLHLLINNAGGNVTRAAIDYTEDEWRGIFETNVFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAPY
GMTKAALQQMTRNLAVEWAEDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAASY
ITGECIAVDGGFLRYGF

Specific function: 7-Alpha-Dehydroxylation Of Cholic Acid, Yielding Deoxycholic Acid And Lithocholic Acid, Respectively. Highest Affinity With Taurochenodeoxycholic Acid. [C]

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=31.8897637795276, Blast_Score=146, Evalue=2e-35,
Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=34.1269841269841, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=32.2448979591837, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=30.1204819277108, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI7705925, Length=247, Percent_Identity=31.1740890688259, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=29.0983606557377, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=30.7392996108949, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4503301, Length=248, Percent_Identity=27.0161290322581, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=28.740157480315, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI31542939, Length=195, Percent_Identity=28.2051282051282, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30.5263157894737, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI59889578, Length=216, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI7705855, Length=199, Percent_Identity=25.1256281407035, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=26.6666666666667, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI109715829, Length=241, Percent_Identity=26.9709543568465, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI7706318, Length=189, Percent_Identity=26.984126984127, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=27.6595744680851, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371731, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI224922801, Length=183, Percent_Identity=26.775956284153, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=25.9067357512953, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1787905, Length=256, Percent_Identity=32.8125, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=34.2741935483871, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=32.5490196078431, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=29.3650793650794, Blast_Score=119, Evalue=1e-28,
Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=26.5060240963855, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=28.0155642023346, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=32.9365079365079, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788459, Length=252, Percent_Identity=31.7460317460317, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367175, Length=250, Percent_Identity=34, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=32.7935222672065, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786812, Length=253, Percent_Identity=28.4584980237154, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=23.921568627451, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787820, Length=228, Percent_Identity=26.3157894736842, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787545, Length=258, Percent_Identity=28.6821705426357, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1786701, Length=190, Percent_Identity=28.4210526315789, Blast_Score=60, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17560676, Length=247, Percent_Identity=32.3886639676113, Blast_Score=133, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=30.6201550387597, Blast_Score=130, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI17555706, Length=247, Percent_Identity=30.7692307692308, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=31.5384615384615, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17560332, Length=261, Percent_Identity=30.2681992337165, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=32.9317269076305, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17560220, Length=264, Percent_Identity=32.5757575757576, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17562908, Length=260, Percent_Identity=30.7692307692308, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI17538480, Length=269, Percent_Identity=31.2267657992565, Blast_Score=103, Evalue=7e-23,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=29.6153846153846, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17560150, Length=258, Percent_Identity=29.8449612403101, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17565030, Length=262, Percent_Identity=30.5343511450382, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=31.1538461538462, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=32.5301204819277, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI71994600, Length=250, Percent_Identity=32.8, Blast_Score=100, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=255, Percent_Identity=28.2352941176471, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=29.3893129770992, Blast_Score=100, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=29.0697674418605, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17551412, Length=261, Percent_Identity=29.8850574712644, Blast_Score=99, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=31.2977099236641, Blast_Score=98, Evalue=5e-21,
Organism=Caenorhabditis elegans, GI17562904, Length=261, Percent_Identity=29.8850574712644, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17563726, Length=259, Percent_Identity=29.7297297297297, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=28.6792452830189, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=256, Percent_Identity=29.296875, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562910, Length=260, Percent_Identity=28.8461538461538, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=29.5880149812734, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17561272, Length=261, Percent_Identity=29.1187739463602, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17538182, Length=258, Percent_Identity=27.1317829457364, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=216, Percent_Identity=30.5555555555556, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=226, Percent_Identity=28.3185840707965, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17508651, Length=250, Percent_Identity=27.2, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17559552, Length=236, Percent_Identity=25.8474576271186, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532177, Length=212, Percent_Identity=27.3584905660377, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17557668, Length=204, Percent_Identity=27.9411764705882, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25152911, Length=194, Percent_Identity=28.8659793814433, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71997402, Length=192, Percent_Identity=29.1666666666667, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=255, Percent_Identity=25.0980392156863, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=266, Percent_Identity=24.812030075188, Blast_Score=89, Evalue=6e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=30.7692307692308, Blast_Score=87, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322067, Length=182, Percent_Identity=32.967032967033, Blast_Score=79, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322227, Length=263, Percent_Identity=26.615969581749, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6319635, Length=258, Percent_Identity=23.6434108527132, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355319, Length=248, Percent_Identity=34.6774193548387, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=34.5238095238095, Blast_Score=120, Evalue=7e-28,
Organism=Drosophila melanogaster, GI24643142, Length=248, Percent_Identity=31.4516129032258, Blast_Score=110, Evalue=8e-25,
Organism=Drosophila melanogaster, GI21357041, Length=247, Percent_Identity=32.3886639676113, Blast_Score=108, Evalue=5e-24,
Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=32.520325203252, Blast_Score=107, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24639444, Length=252, Percent_Identity=30.952380952381, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24644339, Length=248, Percent_Identity=31.0483870967742, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=36, Blast_Score=100, Evalue=7e-22,
Organism=Drosophila melanogaster, GI21356301, Length=185, Percent_Identity=28.6486486486486, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24584752, Length=194, Percent_Identity=28.3505154639175, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364892, Length=199, Percent_Identity=25.1256281407035, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24584748, Length=194, Percent_Identity=29.3814432989691, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076933, Length=194, Percent_Identity=29.3814432989691, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=26.7326732673267, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI28574402, Length=192, Percent_Identity=28.6458333333333, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584744, Length=228, Percent_Identity=27.6315789473684, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24640442, Length=214, Percent_Identity=26.1682242990654, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=26.7326732673267, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007236, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI116007238, Length=148, Percent_Identity=31.7567567567568, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI116007234, Length=94, Percent_Identity=38.2978723404255, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281364494, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007232, Length=94, Percent_Identity=38.2978723404255, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=23.8461538461538, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI22024069, Length=202, Percent_Identity=28.2178217821782, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24580925, Length=191, Percent_Identity=29.8429319371728, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24586328, Length=202, Percent_Identity=27.7227722772277, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011284
- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.100 [H]

Molecular weight: Translated: 28174; Mature: 28043

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPE
CCCCEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCH
RELHGLAADVSDDEERRAILDWVEDHADGLHLLINNAGGNVTRAAIDYTEDEWRGIFETN
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHCCHHHHH
VFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAPYGMTKAALQQMTRNLAVEWA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
EDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS
CCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHH
YITGECIAVDGGFLRYGF
HHCCEEEEECCCEEECCC
>Mature Secondary Structure 
TTHRWRLDGQTALITGASAGIGLAIARELLGFGADLLMVARDADALAQARDELADEFPE
CCCEEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCH
RELHGLAADVSDDEERRAILDWVEDHADGLHLLINNAGGNVTRAAIDYTEDEWRGIFETN
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCHHHHCCHHHHH
VFSAFELSRYAHPLLTQHAASAIVNVGSVSGITHVRSGAPYGMTKAALQQMTRNLAVEWA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
EDGIRVNAVAPWYIRTRRTSGPLSDPDYYEQVIERTPMRRIGEPEEVAAAVGFLCLPAAS
CCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHH
YITGECIAVDGGFLRYGF
HHCCEEEEECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]