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The map label for this gene is yciR [C]

Identifier: 78048529

GI number: 78048529

Start: 3380798

End: 3383203

Strand: Reverse

Name: yciR [C]

Synonym: XCV2973

Alternate gene names: 78048529

Gene position: 3383203-3380798 (Counterclockwise)

Preceding gene: 78048530

Following gene: 78048528

Centisome position: 65.33

GC content: 65.05

Gene sequence:

>2406_bases
ATGGCGCAAGCAGTACGCGGCAAGGGCGGTGGGCAGACCATGCACCTGGTGCGTGGCTGGCTGACGCTTCCTCTGGCGCT
GTTGATCGGTATCGCCGTCTGTATGACGGTGGTGTCGGCGCTGGTGATCGAAGTGCAGTCCGGCGCGACCGCCTGGATCG
TCGGCCAAAGCCATTGGTCCAACGCCCAGCAGGAATCGGTGTACTGGATGGAGCGCTATCTGGGCAGCGGGGATACGGCC
GATCTGCAGGCCGCCTGCCGCGCGCTGGAAGTGCCGCTGGGCGACCGCGCCGCACGCTTGGCGATCGAACAGCCGGTGAT
CGATTGGGACGCGGTCTACGCCGGTCTGACCGCTGGGCGTAATGCCCATGAAGACATGCCGCAAATGGTGCGGCTGTATC
GCTACGGGCACCAATTTCCGTATCTCGGCGACGCCATCGCGCTGTGGAAGCGCACCGACGCCGGCATCCTGCAACTGAGC
GATCTGGCCGACCGCGCCGCTTCGGTGCAGGCCGCCAACCGGCCCGACCCGCGCGCGCTGCAGGCACTGCGCGATGAACT
GCATCTGCTGGACGGCCGCATGCGTCACGACGCGTCCGAATTCCTGGCCTACCTGACCCGCTGCGCGCGGCTGCTGCACG
ATGTGATGGTGGTCTGCAGCCTGGCCACCTTGCTGCTGGTGTTGATCACCTGCGTACTGGCGATGCGGCGCATTCGCGAT
TATCTGCTGTCGCATGAAGGCCGCTTCCGTACCGCGTTTCAGCAGGCGGCGCTGGGCATGGTCAAGTTCGATCTGCGCGG
CAACGTGCTGGATGCCAATGCGTCGATGGCCAACGTGCTGCTCTACCGGCCCGAAGAATTGCAGGCCTGCACCTTGGCCG
AGGTGATGCATCCGGAAGACATCAAGCTGGACAGCCGCGGCATGCTCGATTGGCCCAAGCTGCTGCAGTCCGGCGAATTG
CGCTTCGTGCGTGCCGACGGCGGGGTGATGTGGGGCCGCTGGAGCGCGTCGTTGGTCGAGCCGGGGCCGGAAGAGCCGAC
CCTGGTGCTGGCGGTGATCGAAGATGTCTCGCACGCGCATGAGCTGGCCGACGAAGTGGCCTTCCATGCGCGCCACGACG
CGATGACCGGGCTGATCAACCGGCATGAAATCGAACGCCGGCTGCTGCGCCTGATCGAGCTGCCGCAATCGCCGCAGATG
TGCCACGCGCTGTGCTTTGTCGACCTGGATCATTTCAAGCTGGTCAACGACACCTTCGGGCATGCGGTCGGCGACAAGTT
CCTGTGCCACTTCGCCGACGTGATCACCATGCAGCTGCGTTCTGGCGATTGGTTGGGGCGTCTGGGCGGCGATGAGTTCG
CCATCCTGCTGGCCAATACCGACCTGGCGCAGGCGCAGGCCGTGCTGGAACGCATGCACGGCGTGCTCGGTCAACCGTGG
AGCCATCAAGGCGGGCGACCGCTGACGCCCAGTTGCAGTTTTGGCGTGGTGGAGATTCGCCACGGCGTCAGCGACCTCAC
TACCTTGATGACCGCCGCCGATCTGGCTTGTCATGCGGCCAAGGAAGAAGGGCGCAACCGCGTTCGCTGCTTCAACGAGA
ACGATCTGGCACTGGCGCAGCGCCGCCACGATGGTGGCTGGATCAGTGCGGTGCAACAGGCGATCGCCGAAGAGCGTTTG
CTGCTGTACGCGCAGAAAATCCAGGTGCTGAACGACCCGGGGCGCCTGCAGTACGAGGTGCTGGTGCGCATGCGCGCCAG
CGACGGGCGGGTGCTGAGCCCGGGTGAATTCTTGCCGGCAGTGGAGCGTTACGGCCTGGGGCGCATGGTCGATACTTATG
TGCTGGAAGCGCTGTGCGCGCAGTTGGCGGCCAATCCGATGCATGTGGCGATGCTGGACCTGTGCCACGTCAATCTGTCT
GCGCAATCGATCGCGCAGCCGGATTTTCTCGACGTCGTCTGCACCCTGTTCGAGCGCTACCCGGCACTGGTGCCGAAGCT
GTGCATGGAGATCACCGAGACCGCGGTCATCGGCGATCTGGAACACGCGCAGCGTTTCGTGCAGAGCGTGCGCGCACGCG
GGTGTCACGTGGCGCTGGACGATTTCGGCAGCGGCCTGGCCTCGTTCGGCTATCTCAAGCAATTCACCGTGGACGTGTTG
AAGATCGATTGCGGCTTCGTCCGCAACTATGCGCACGATGCAGTGGATCGCGCGGCGGTGCATTCGATCGCCCAGGTCGG
GCTGGCGCTGGGCATCGAGGTGGTCGCCGAAGGCGTGGAATCGGAGGCCGACATCCCCGGGCTGCGTGAGGCCGGCGTGG
GCCAGGTGCAGGGTTTCAGCCTGCATCGTCCATGCCCGCTGGAAGAACTGTTGCACACACCGCAGCTGGTGGCCGTCTCC
GGGTAG

Upstream 100 bases:

>100_bases
AGCGGGCATAGCCATACAGACTCGGCCGTTGCGGCCGTTACTGCCTTCAGGCGCCCAGTGGGCGCCTGAATCGCATTGGG
GCGGCGAAGGACGGACGGCG

Downstream 100 bases:

>100_bases
CGCGCTTGACCCGGGCGATGTCGGGCAGCGTCAGGCCGGTGCTGCGTGTACAACGCGGCTGGCGACTGCCTGCTGCCGAT
TGCTGGCCCGGTCAGCCGGC

Product: putative signal transduction protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 801; Mature: 800

Protein sequence:

>801_residues
MAQAVRGKGGGQTMHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQSHWSNAQQESVYWMERYLGSGDTA
DLQAACRALEVPLGDRAARLAIEQPVIDWDAVYAGLTAGRNAHEDMPQMVRLYRYGHQFPYLGDAIALWKRTDAGILQLS
DLADRAASVQAANRPDPRALQALRDELHLLDGRMRHDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRD
YLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGEL
RFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQM
CHALCFVDLDHFKLVNDTFGHAVGDKFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPW
SHQGGRPLTPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNENDLALAQRRHDGGWISAVQQAIAEERL
LLYAQKIQVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLAANPMHVAMLDLCHVNLS
AQSIAQPDFLDVVCTLFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVL
KIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHTPQLVAVS
G

Sequences:

>Translated_801_residues
MAQAVRGKGGGQTMHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQSHWSNAQQESVYWMERYLGSGDTA
DLQAACRALEVPLGDRAARLAIEQPVIDWDAVYAGLTAGRNAHEDMPQMVRLYRYGHQFPYLGDAIALWKRTDAGILQLS
DLADRAASVQAANRPDPRALQALRDELHLLDGRMRHDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRD
YLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGEL
RFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQM
CHALCFVDLDHFKLVNDTFGHAVGDKFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPW
SHQGGRPLTPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNENDLALAQRRHDGGWISAVQQAIAEERL
LLYAQKIQVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLAANPMHVAMLDLCHVNLS
AQSIAQPDFLDVVCTLFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVL
KIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHTPQLVAVS
G
>Mature_800_residues
AQAVRGKGGGQTMHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQSHWSNAQQESVYWMERYLGSGDTAD
LQAACRALEVPLGDRAARLAIEQPVIDWDAVYAGLTAGRNAHEDMPQMVRLYRYGHQFPYLGDAIALWKRTDAGILQLSD
LADRAASVQAANRPDPRALQALRDELHLLDGRMRHDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRDY
LLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPEDIKLDSRGMLDWPKLLQSGELR
FVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAHELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQMC
HALCFVDLDHFKLVNDTFGHAVGDKFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPWS
HQGGRPLTPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNENDLALAQRRHDGGWISAVQQAIAEERLL
LYAQKIQVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPAVERYGLGRMVDTYVLEALCAQLAANPMHVAMLDLCHVNLSA
QSIAQPDFLDVVCTLFERYPALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVLK
IDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFSLHRPCPLEELLHTPQLVAVSG

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=29.4252873563218, Blast_Score=165, Evalue=1e-41,
Organism=Escherichia coli, GI1788381, Length=447, Percent_Identity=27.9642058165548, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI1788849, Length=399, Percent_Identity=27.3182957393484, Blast_Score=147, Evalue=4e-36,
Organism=Escherichia coli, GI226510982, Length=307, Percent_Identity=35.5048859934853, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=25.8293838862559, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=31.8181818181818, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=27.9661016949153, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=36.5714285714286, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=32.7777777777778, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI87081977, Length=151, Percent_Identity=35.0993377483444, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI87081881, Length=314, Percent_Identity=28.9808917197452, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081980, Length=218, Percent_Identity=30.7339449541284, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=28.0487804878049, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1789650, Length=479, Percent_Identity=23.3820459290188, Blast_Score=90, Evalue=7e-19,
Organism=Escherichia coli, GI1787055, Length=254, Percent_Identity=26.3779527559055, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1788502, Length=224, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788085, Length=161, Percent_Identity=34.1614906832298, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=31.055900621118, Blast_Score=87, Evalue=6e-18,
Organism=Escherichia coli, GI1786507, Length=215, Percent_Identity=28.8372093023256, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081845, Length=213, Percent_Identity=26.2910798122066, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=31.6091954022989, Blast_Score=80, Evalue=7e-16,
Organism=Escherichia coli, GI1787802, Length=179, Percent_Identity=30.1675977653631, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=108, Percent_Identity=37.962962962963, Blast_Score=68, Evalue=3e-12,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=31.6455696202532, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 88241; Mature: 88109

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAVRGKGGGQTMHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQSHWS
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCC
NAQQESVYWMERYLGSGDTADLQAACRALEVPLGDRAARLAIEQPVIDWDAVYAGLTAGR
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCC
NAHEDMPQMVRLYRYGHQFPYLGDAIALWKRTDAGILQLSDLADRAASVQAANRPDPRAL
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCHHHH
QALRDELHLLDGRMRHDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRD
HHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPED
HHHCCCCHHHHHHHHHHHHHEEEECCCCEEECCCCHHHEEEECCCHHHHHHHHHHCCCCC
IKLDSRGMLDWPKLLQSGELRFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAH
CCCCCCCCCCHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHH
ELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH
HAVGDKFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPW
HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
SHQGGRPLTPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNENDLALAQ
CCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH
RRHDGGWISAVQQAIAEERLLLYAQKIQVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHH
VERYGLGRMVDTYVLEALCAQLAANPMHVAMLDLCHVNLSAQSIAQPDFLDVVCTLFERY
HHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHH
PALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHH
KIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC
LHRPCPLEELLHTPQLVAVSG
CCCCCCHHHHHCCCCEEEECC
>Mature Secondary Structure 
AQAVRGKGGGQTMHLVRGWLTLPLALLIGIAVCMTVVSALVIEVQSGATAWIVGQSHWS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCC
NAQQESVYWMERYLGSGDTADLQAACRALEVPLGDRAARLAIEQPVIDWDAVYAGLTAGR
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHCCC
NAHEDMPQMVRLYRYGHQFPYLGDAIALWKRTDAGILQLSDLADRAASVQAANRPDPRAL
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEHHHHHHHHHHCCCCCCCCHHHH
QALRDELHLLDGRMRHDASEFLAYLTRCARLLHDVMVVCSLATLLLVLITCVLAMRRIRD
HHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLLSHEGRFRTAFQQAALGMVKFDLRGNVLDANASMANVLLYRPEELQACTLAEVMHPED
HHHCCCCHHHHHHHHHHHHHEEEECCCCEEECCCCHHHEEEECCCHHHHHHHHHHCCCCC
IKLDSRGMLDWPKLLQSGELRFVRADGGVMWGRWSASLVEPGPEEPTLVLAVIEDVSHAH
CCCCCCCCCCHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHH
ELADEVAFHARHDAMTGLINRHEIERRLLRLIELPQSPQMCHALCFVDLDHFKLVNDTFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHH
HAVGDKFLCHFADVITMQLRSGDWLGRLGGDEFAILLANTDLAQAQAVLERMHGVLGQPW
HHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC
SHQGGRPLTPSCSFGVVEIRHGVSDLTTLMTAADLACHAAKEEGRNRVRCFNENDLALAQ
CCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH
RRHDGGWISAVQQAIAEERLLLYAQKIQVLNDPGRLQYEVLVRMRASDGRVLSPGEFLPA
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHEEEECCCCCEECCHHHHHH
VERYGLGRMVDTYVLEALCAQLAANPMHVAMLDLCHVNLSAQSIAQPDFLDVVCTLFERY
HHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHH
PALVPKLCMEITETAVIGDLEHAQRFVQSVRARGCHVALDDFGSGLASFGYLKQFTVDVL
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEHHHHCCHHHHHHHHHHHHHHHH
KIDCGFVRNYAHDAVDRAAVHSIAQVGLALGIEVVAEGVESEADIPGLREAGVGQVQGFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCC
LHRPCPLEELLHTPQLVAVSG
CCCCCCHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]