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The map label for this gene is rfaY [H]

Identifier: 78046832

GI number: 78046832

Start: 1433241

End: 1434434

Strand: Reverse

Name: rfaY [H]

Synonym: XCV1276

Alternate gene names: 78046832

Gene position: 1434434-1433241 (Counterclockwise)

Preceding gene: 78046833

Following gene: 78046831

Centisome position: 27.7

GC content: 67.92

Gene sequence:

>1194_bases
ATGAACGCCGACACGCTGAATCTGATGTTGCAACGCGACCTGCCCAGCGCCGCGGCTGGCTGCCAGCAGGCTTACGGACG
CATCGTGCTTGCCTGCCAGAACACGGTGACTGCGATCGCGCTGGCGATCACCCGCGATCTCGCGGCCAGCGAAGACATTG
CCCAGGAGGCCTTCCTGCGTGCTTGGCAGCGGCTGGCGCAACTGCATCAGCCGGCCAGCTTCCTGCCCTGGCTTCGTCAG
ATCACCCGCAACCTGGCGCGCGACTGGCTGCGCGCCAACCGCCATCGTGCGCTCGGTGGTGGGGCGGCGGAGCTTGCCAT
CGCGATGGCAGCCGACCCGGCGCCCTCGCCCGCCGACCAGTTGCTGCAGGTGGAAGAAGAGATCGCGGCGCTCGACATCA
TTTCTGCACTGCCGGAAGAAAGTCGCGAAACGCTGCTGTTGTATTACCGCGAAGGCCAGCGCTCGCAACAGGTTGCCTCG
CTGCTTGGACTCAGCGATGCAGCGGTGCGCAAGCGCCTGTCGCGCGCACGTGCCAGCGTACGCAGCGAGCTGCTGCGCCG
GTTCGGCGAATTCGCGCGCGGCAGCGCCCCCGGCGTGGCGTTCGCCAGCGCAGTAAGCTCGGCCAGCCTGTTGGGCGCGC
CGGGCAAGGCTAGCGCGGCCGTTGTGCTGACGGGCATCGGAGGCGCGGGCAAACTAGGCGCGAGCGGGTTGAGCGGCTCG
GCGCTTGGTGGGAGCGGCGCCGCGGGCGCACTCAGCCTCTGGCTCGGCATGCCGGCCCTGTTCGCTGCGTGCGCAGTGCT
GGTTGCCGGGATCGGCACCTACTGGTCGTACTGGTACCTGCTGCGCTTCGCACAGAGCGCCAGCGAGGCAGCGGCGATCC
GTCGGTTCGTGCACGTCACCACGCTGACCTCGGTGCTGGCGTGCGGCAGCACGCTGGTGCTGAAACACCTGCAGGCGGGC
GCATGGGCATCGGTTCTGGCGCTGTGCGCAGGCATGGCGGTGCTCAACTATCAATCCCTGCGCGTCCTGCCACGTGTCAT
GCGCCCCATGCTCAAGCGCGATGCGCGCAGACGCGGCGTCACCCGGGCACCGCTGTTATACCGCTGCATGTTCAGTCCAG
GCGCGATGCTGGTGAGCACTGCGGCTGTCATTGTGCCCGTCGTGCGGCACTACATGCAGTTGGGAATGCTCTGA

Upstream 100 bases:

>100_bases
GCCAGCGTGGCCATCCGCTGGTACGACAAGCATGCTCGTCGGCGCGGTCACATCCGTTGCCGGCCTGCGTCATGCTGGCA
CCAGGACATGGATTGCGCCG

Downstream 100 bases:

>100_bases
GCCGACCGGATATCACCGCAGGAGACGATGACACGCCGGTGCGGGCCAAGTGAGCGCAGACGGAGCAACCCTGCGTATGG
CAGCCTGGTGGCATGGGCGA

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MNADTLNLMLQRDLPSAAAGCQQAYGRIVLACQNTVTAIALAITRDLAASEDIAQEAFLRAWQRLAQLHQPASFLPWLRQ
ITRNLARDWLRANRHRALGGGAAELAIAMAADPAPSPADQLLQVEEEIAALDIISALPEESRETLLLYYREGQRSQQVAS
LLGLSDAAVRKRLSRARASVRSELLRRFGEFARGSAPGVAFASAVSSASLLGAPGKASAAVVLTGIGGAGKLGASGLSGS
ALGGSGAAGALSLWLGMPALFAACAVLVAGIGTYWSYWYLLRFAQSASEAAAIRRFVHVTTLTSVLACGSTLVLKHLQAG
AWASVLALCAGMAVLNYQSLRVLPRVMRPMLKRDARRRGVTRAPLLYRCMFSPGAMLVSTAAVIVPVVRHYMQLGML

Sequences:

>Translated_397_residues
MNADTLNLMLQRDLPSAAAGCQQAYGRIVLACQNTVTAIALAITRDLAASEDIAQEAFLRAWQRLAQLHQPASFLPWLRQ
ITRNLARDWLRANRHRALGGGAAELAIAMAADPAPSPADQLLQVEEEIAALDIISALPEESRETLLLYYREGQRSQQVAS
LLGLSDAAVRKRLSRARASVRSELLRRFGEFARGSAPGVAFASAVSSASLLGAPGKASAAVVLTGIGGAGKLGASGLSGS
ALGGSGAAGALSLWLGMPALFAACAVLVAGIGTYWSYWYLLRFAQSASEAAAIRRFVHVTTLTSVLACGSTLVLKHLQAG
AWASVLALCAGMAVLNYQSLRVLPRVMRPMLKRDARRRGVTRAPLLYRCMFSPGAMLVSTAAVIVPVVRHYMQLGML
>Mature_397_residues
MNADTLNLMLQRDLPSAAAGCQQAYGRIVLACQNTVTAIALAITRDLAASEDIAQEAFLRAWQRLAQLHQPASFLPWLRQ
ITRNLARDWLRANRHRALGGGAAELAIAMAADPAPSPADQLLQVEEEIAALDIISALPEESRETLLLYYREGQRSQQVAS
LLGLSDAAVRKRLSRARASVRSELLRRFGEFARGSAPGVAFASAVSSASLLGAPGKASAAVVLTGIGGAGKLGASGLSGS
ALGGSGAAGALSLWLGMPALFAACAVLVAGIGTYWSYWYLLRFAQSASEAAAIRRFVHVTTLTSVLACGSTLVLKHLQAG
AWASVLALCAGMAVLNYQSLRVLPRVMRPMLKRDARRRGVTRAPLLYRCMFSPGAMLVSTAAVIVPVVRHYMQLGML

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in lipopolysaccharide biosynthesis and pathogenicity [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 42076; Mature: 42076

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNADTLNLMLQRDLPSAAAGCQQAYGRIVLACQNTVTAIALAITRDLAASEDIAQEAFLR
CCCCHHHHHHHCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWQRLAQLHQPASFLPWLRQITRNLARDWLRANRHRALGGGAAELAIAMAADPAPSPADQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCHHH
LLQVEEEIAALDIISALPEESRETLLLYYREGQRSQQVASLLGLSDAAVRKRLSRARASV
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
RSELLRRFGEFARGSAPGVAFASAVSSASLLGAPGKASAAVVLTGIGGAGKLGASGLSGS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
ALGGSGAAGALSLWLGMPALFAACAVLVAGIGTYWSYWYLLRFAQSASEAAAIRRFVHVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTSVLACGSTLVLKHLQAGAWASVLALCAGMAVLNYQSLRVLPRVMRPMLKRDARRRGV
HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TRAPLLYRCMFSPGAMLVSTAAVIVPVVRHYMQLGML
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNADTLNLMLQRDLPSAAAGCQQAYGRIVLACQNTVTAIALAITRDLAASEDIAQEAFLR
CCCCHHHHHHHCCCCHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AWQRLAQLHQPASFLPWLRQITRNLARDWLRANRHRALGGGAAELAIAMAADPAPSPADQ
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEECCCCCCCHHH
LLQVEEEIAALDIISALPEESRETLLLYYREGQRSQQVASLLGLSDAAVRKRLSRARASV
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
RSELLRRFGEFARGSAPGVAFASAVSSASLLGAPGKASAAVVLTGIGGAGKLGASGLSGS
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCC
ALGGSGAAGALSLWLGMPALFAACAVLVAGIGTYWSYWYLLRFAQSASEAAAIRRFVHVT
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLTSVLACGSTLVLKHLQAGAWASVLALCAGMAVLNYQSLRVLPRVMRPMLKRDARRRGV
HHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TRAPLLYRCMFSPGAMLVSTAAVIVPVVRHYMQLGML
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12024217; 7579621 [H]