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The map label for this gene is jag [H]

Identifier: 78045166

GI number: 78045166

Start: 1662

End: 2282

Strand: Direct

Name: jag [H]

Synonym: CHY_0005

Alternate gene names: 78045166

Gene position: 1662-2282 (Clockwise)

Preceding gene: 78043134

Following gene: 78044593

Centisome position: 0.07

GC content: 42.19

Gene sequence:

>621_bases
ATGCGGGAGATTGAGGTTACCGGCAAGACTGTTGAGGAAGCGGTAAGTTTGGGTTTAGAGCAGCTCGGGGTAGATCGATC
GCTCGTTGAGATTGAAATTTTGGAGCAACCTTCCAAAGGTATTCTGGGTCTTTTTGGACAGAAACCGGCTAAGGTAAAGC
TTACTATTAAAAGTAAGGTTATGGAAAAGGCCAGAAAATTTTTGGATGATGTTATTTCGGCCATGGGTGTTAACGTTGGT
TACGAAGTATTAGAGAGGGACGATCATCTTTTAATTAACCTCTATGGCAGTGATGTTGGTATATTAATTGGGTACCGGGG
AGAAACTTTGGATGCGTTGCAATATATAACTAATTTAGCTGCCAATAAAAATGAAATAACTCCCCGGCGGATTATTTTAG
ATGCCCAGGGTTATCGCGAACGACGGGAAAAAACTTTAATCCGCCTTGCTGAAAAAGTGGCGGAAAAGGTTCGGCAAAAA
GGACGTCCTTTTGCTTTAGAACCTATGACCCCGCAGGAGAGACGAATCATCCACACCGCTTTACAAAATTTTGAAGGGGT
TTATACCTACAGTGAAGGCGAAGACCCAAATCGTAAAGTAATAATAGCACCTAAAAGATAG

Upstream 100 bases:

>100_bases
TTGGGTATTTACTGGGTGGTATTAAATATCATGGGCATTATTCAGCAGTATTTCGTCAATCAAAGCACCCACAAGATTGT
TGAAAGGGGTACCAAAGAAA

Downstream 100 bases:

>100_bases
GCAGGTTTAACACCTGCCTTTTTTCATCGATTAAATATTGTTATAATTTTTTAAAAAGCTTTTAGGAGTGAAGGAAATGA
TGGAAGATACCATCGCTGCC

Product: jag protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MREIEVTGKTVEEAVSLGLEQLGVDRSLVEIEILEQPSKGILGLFGQKPAKVKLTIKSKVMEKARKFLDDVISAMGVNVG
YEVLERDDHLLINLYGSDVGILIGYRGETLDALQYITNLAANKNEITPRRIILDAQGYRERREKTLIRLAEKVAEKVRQK
GRPFALEPMTPQERRIIHTALQNFEGVYTYSEGEDPNRKVIIAPKR

Sequences:

>Translated_206_residues
MREIEVTGKTVEEAVSLGLEQLGVDRSLVEIEILEQPSKGILGLFGQKPAKVKLTIKSKVMEKARKFLDDVISAMGVNVG
YEVLERDDHLLINLYGSDVGILIGYRGETLDALQYITNLAANKNEITPRRIILDAQGYRERREKTLIRLAEKVAEKVRQK
GRPFALEPMTPQERRIIHTALQNFEGVYTYSEGEDPNRKVIIAPKR
>Mature_206_residues
MREIEVTGKTVEEAVSLGLEQLGVDRSLVEIEILEQPSKGILGLFGQKPAKVKLTIKSKVMEKARKFLDDVISAMGVNVG
YEVLERDDHLLINLYGSDVGILIGYRGETLDALQYITNLAANKNEITPRRIILDAQGYRERREKTLIRLAEKVAEKVRQK
GRPFALEPMTPQERRIIHTALQNFEGVYTYSEGEDPNRKVIIAPKR

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23301; Mature: 23301

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: PS51061 R3H ; PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREIEVTGKTVEEAVSLGLEQLGVDRSLVEIEILEQPSKGILGLFGQKPAKVKLTIKSKV
CCEEECCCHHHHHHHHHCHHHHCCCCCEEEEEEECCCCCCCEECCCCCCCEEEEEHHHHH
MEKARKFLDDVISAMGVNVGYEVLERDDHLLINLYGSDVGILIGYRGETLDALQYITNLA
HHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHH
ANKNEITPRRIILDAQGYRERREKTLIRLAEKVAEKVRQKGRPFALEPMTPQERRIIHTA
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
LQNFEGVYTYSEGEDPNRKVIIAPKR
HHCCCCEEEECCCCCCCCEEEEECCC
>Mature Secondary Structure
MREIEVTGKTVEEAVSLGLEQLGVDRSLVEIEILEQPSKGILGLFGQKPAKVKLTIKSKV
CCEEECCCHHHHHHHHHCHHHHCCCCCEEEEEEECCCCCCCEECCCCCCCEEEEEHHHHH
MEKARKFLDDVISAMGVNVGYEVLERDDHLLINLYGSDVGILIGYRGETLDALQYITNLA
HHHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHH
ANKNEITPRRIILDAQGYRERREKTLIRLAEKVAEKVRQKGRPFALEPMTPQERRIIHTA
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
LQNFEGVYTYSEGEDPNRKVIIAPKR
HHCCCCEEEECCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]