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The map label for this gene is intR [C]

Identifier: 78045014

GI number: 78045014

Start: 1518067

End: 1519182

Strand: Direct

Name: intR [C]

Synonym: CHY_1702

Alternate gene names: 78045014

Gene position: 1518067-1519182 (Clockwise)

Preceding gene: 78043569

Following gene: 78042795

Centisome position: 63.21

GC content: 37.28

Gene sequence:

>1116_bases
TTGCGCGGACACATAAGAAAAAGAGGCAATTACTATTCGGTCGTTCTCTACTTAGGTAAGGATGAAAACGGCAAGAAAAA
ATACAAATGGATTGGAGGATTCAAAACCAAAAAAGAGGCCGAGAAAGTTTTGGCGGAAATGATAAACAAGGTAGAGACCA
ACAATTTTATATTCCCTGAAAAGATTACCTTGAAGGAGTTTTTGAATTACTGGTTAGAGAACTATGTCCGTCCCAACCTC
TCACCTACTACTGCTTATGGCTACGAGGCCATTATTAATTTACACATTATTCCTTTTTTCAAAAACATCGAGCTTCAAAA
AGTACGGCCAATTGATATTCAGCAGTACTACAATTCAAAAAGGGATGAGTTATCAGGGAAAACGCTATTGCAGCACCACC
GGATACTACATAAAGCGTTTGACTTTGCTATGAAATTGCAATTAATCCCTAATAACCCAATCGACTTTGTCGATAGCCCG
AAAGCTAAGAAGTATAAAGCAAAAATCCTTGATTTGAAAGAAATTAAAACCTTGCTAAACGCTTTAAAAGATACTGACTT
AGAAGTTCCAATAAACTTAGCACTTTCATTAGGTCTAAGACGCGGCGAATTGCTTGCTTTAAAGTGGGAAGATGTTAATT
GGGAAGAAGGTACGATCCAAATTAGAAGAAACTTGGTCCGGGCAGGCACGAAACTAATTTTAAAAGAACCTAAGAGCGAA
ACCAGTATCAGGACCTTGAAACTTTCTAAAACACTTCTAACCATGTTAAAAAATCACCGCAAAAAACAAATAGAACTTAA
ACTAATGCTTGGCAATGAATACAAAGACACTGGATTTATTTGTTGTAAAAACAATGGTGAAATGATAAACCCAAGCACTT
TTAGCCATCAATTCTCTGATTTCCTAAAAAAGCACGGGCTTCCAGACATTCGTCTGCATGATCTGCGACATACAAACGCC
ACACTAATGCTCAAAAGTAATATTCCTGCCAAAATTGCAAGCTCCAGGCTTGGCCACTCAACAGTAGCCATCACTCTTGA
CTTATATTCGCACGTTTTAACCGACATGGATGAAGAAGTCGCAAATAAAATTGATGACATCATTTACCAAAAATAA

Upstream 100 bases:

>100_bases
AAAAATCCTTCTTTTTTGAAAAATTTTTATGTTAAATTTTTTGTTAGTGGGGAATTTTTTATTTTCTTTTCTTTCGAACA
TTTGTTTTGGAGGTGTTACT

Downstream 100 bases:

>100_bases
CCCTGCAAATCCAGTGCAAATCCAAGAGATAAAATTAGATAAAAAATGCAGTGAAAAGATAAAAAGTTAAAATAGTCGTA
GTGCTTGATATTCCTGAGTT

Product: prophage LambdaCh01, site-specific recombinase phage integrase family protein protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MRGHIRKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPEKITLKEFLNYWLENYVRPNL
SPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSKRDELSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSP
KAKKYKAKILDLKEIKTLLNALKDTDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEPKSE
TSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQFSDFLKKHGLPDIRLHDLRHTNA
TLMLKSNIPAKIASSRLGHSTVAITLDLYSHVLTDMDEEVANKIDDIIYQK

Sequences:

>Translated_371_residues
MRGHIRKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPEKITLKEFLNYWLENYVRPNL
SPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSKRDELSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSP
KAKKYKAKILDLKEIKTLLNALKDTDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEPKSE
TSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQFSDFLKKHGLPDIRLHDLRHTNA
TLMLKSNIPAKIASSRLGHSTVAITLDLYSHVLTDMDEEVANKIDDIIYQK
>Mature_371_residues
MRGHIRKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPEKITLKEFLNYWLENYVRPNL
SPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSKRDELSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSP
KAKKYKAKILDLKEIKTLLNALKDTDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEPKSE
TSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQFSDFLKKHGLPDIRLHDLRHTNA
TLMLKSNIPAKIASSRLGHSTVAITLDLYSHVLTDMDEEVANKIDDIIYQK

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=270, Percent_Identity=27.037037037037, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43076; Mature: 43076

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGHIRKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPE
CCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCC
KITLKEFLNYWLENYVRPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSK
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEECCCCCHHHHHCCC
RDELSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSPKAKKYKAKILDLKEIKTLLN
HHHCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHH
ALKDTDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEPKSE
HHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCC
TSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQFSD
CCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCEECCCHHHHHHHH
FLKKHGLPDIRLHDLRHTNATLMLKSNIPAKIASSRLGHSTVAITLDLYSHVLTDMDEEV
HHHHCCCCCCEEEECCCCCEEEEEECCCCHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHH
ANKIDDIIYQK
HHHHHHHHCCC
>Mature Secondary Structure
MRGHIRKRGNYYSVVLYLGKDENGKKKYKWIGGFKTKKEAEKVLAEMINKVETNNFIFPE
CCCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEECCC
KITLKEFLNYWLENYVRPNLSPTTAYGYEAIINLHIIPFFKNIELQKVRPIDIQQYYNSK
CCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEECCCCCHHHHHCCC
RDELSGKTLLQHHRILHKAFDFAMKLQLIPNNPIDFVDSPKAKKYKAKILDLKEIKTLLN
HHHCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHH
ALKDTDLEVPINLALSLGLRRGELLALKWEDVNWEEGTIQIRRNLVRAGTKLILKEPKSE
HHCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCC
TSIRTLKLSKTLLTMLKNHRKKQIELKLMLGNEYKDTGFICCKNNGEMINPSTFSHQFSD
CCEEEEHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCEECCCHHHHHHHH
FLKKHGLPDIRLHDLRHTNATLMLKSNIPAKIASSRLGHSTVAITLDLYSHVLTDMDEEV
HHHHCCCCCCEEEECCCCCEEEEEECCCCHHHHHHCCCCCEEEEEHHHHHHHHHCCHHHH
ANKIDDIIYQK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]