Click here to switch to the map view.

The map label for this gene is sigZ [H]

Identifier: 78042795

GI number: 78042795

Start: 1523276

End: 1523836

Strand: Direct

Name: sigZ [H]

Synonym: CHY_1709

Alternate gene names: 78042795

Gene position: 1523276-1523836 (Clockwise)

Preceding gene: 78045014

Following gene: 78042956

Centisome position: 63.43

GC content: 34.94

Gene sequence:

>561_bases
GTGATTCGATTGGCTAATATTTTTGAAGACTTCTCAAAAGAGTTTTACCAGCTTCTAAAAAATTTTATTAAAAAGCAGGT
TTCTCAGGAATCCGACGTGGAAGACATTCTTCAGGAAGTAATGATTAAGATTTATAAAAACATTGATAAATTAAACGATA
GCAGTAAACTCCAAAGTTGGATATACCAAATAGCCAAAAATACAATCATCGACTATTACCGTAAGCAAAGTAAATCTATC
TTTCTCCATGACAACCTTGTGTTTTACTCGAGTCCCGTTGAGTCTACATTTAATAAGGAAATTGCTCAGTGCTTAAAAAA
TATGATTGATCATCTTCCCGACCCGTATCGCCAAGCAATTTTACTCACCGAATATCATGGCTTTACCCAAAAAAAAGTTA
GTGAAAAACTGGGTCTTTCTGTTTCCGGAGTAAAATCTAGAGTACAGCGAGCACGCAAGATGCTTAAAAACATGCTTGAA
AACTGCTGCTACCTGGAATTTGATCGACTTGGCAATATAATTGATTACCAGCATAAAGACACAAACTGCAAATATTGTTG
A

Upstream 100 bases:

>100_bases
AGAAGATGATAACGGATGGCCGCTGAGATTGCAGGTACCATCATAAAATCGACTCCAGCCACTACCCGTAATATAATATC
ATTGGGAAATAATCTACGGG

Downstream 100 bases:

>100_bases
AAAAAGGACGTAAGGCAGATGCGTCCTTTTTTCTTTTTTACCGTCTTAATTAATAAAAATGTATTTTTAGGAGGAGGATT
TACTATGGGAGAAGATAAAA

Product: RNA polymerase sigma factor SigZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MIRLANIFEDFSKEFYQLLKNFIKKQVSQESDVEDILQEVMIKIYKNIDKLNDSSKLQSWIYQIAKNTIIDYYRKQSKSI
FLHDNLVFYSSPVESTFNKEIAQCLKNMIDHLPDPYRQAILLTEYHGFTQKKVSEKLGLSVSGVKSRVQRARKMLKNMLE
NCCYLEFDRLGNIIDYQHKDTNCKYC

Sequences:

>Translated_186_residues
MIRLANIFEDFSKEFYQLLKNFIKKQVSQESDVEDILQEVMIKIYKNIDKLNDSSKLQSWIYQIAKNTIIDYYRKQSKSI
FLHDNLVFYSSPVESTFNKEIAQCLKNMIDHLPDPYRQAILLTEYHGFTQKKVSEKLGLSVSGVKSRVQRARKMLKNMLE
NCCYLEFDRLGNIIDYQHKDTNCKYC
>Mature_186_residues
MIRLANIFEDFSKEFYQLLKNFIKKQVSQESDVEDILQEVMIKIYKNIDKLNDSSKLQSWIYQIAKNTIIDYYRKQSKSI
FLHDNLVFYSSPVESTFNKEIAQCLKNMIDHLPDPYRQAILLTEYHGFTQKKVSEKLGLSVSGVKSRVQRARKMLKNMLE
NCCYLEFDRLGNIIDYQHKDTNCKYC

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=143, Percent_Identity=28.6713286713287, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI1790746, Length=149, Percent_Identity=26.8456375838926, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014304
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22077; Mature: 22077

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLANIFEDFSKEFYQLLKNFIKKQVSQESDVEDILQEVMIKIYKNIDKLNDSSKLQSW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IYQIAKNTIIDYYRKQSKSIFLHDNLVFYSSPVESTFNKEIAQCLKNMIDHLPDPYRQAI
HHHHHHHHHHHHHHHHCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLTEYHGFTQKKVSEKLGLSVSGVKSRVQRARKMLKNMLENCCYLEFDRLGNIIDYQHKD
HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCC
TNCKYC
CCCCCC
>Mature Secondary Structure
MIRLANIFEDFSKEFYQLLKNFIKKQVSQESDVEDILQEVMIKIYKNIDKLNDSSKLQSW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH
IYQIAKNTIIDYYRKQSKSIFLHDNLVFYSSPVESTFNKEIAQCLKNMIDHLPDPYRQAI
HHHHHHHHHHHHHHHHCCEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLTEYHGFTQKKVSEKLGLSVSGVKSRVQRARKMLKNMLENCCYLEFDRLGNIIDYQHKD
HHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCC
TNCKYC
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]