Definition Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome.
Accession NC_007503
Length 2,401,520

Click here to switch to the map view.

The map label for this gene is ycbL [C]

Identifier: 78044793

GI number: 78044793

Start: 517219

End: 518037

Strand: Direct

Name: ycbL [C]

Synonym: CHY_0600

Alternate gene names: 78044793

Gene position: 517219-518037 (Clockwise)

Preceding gene: 78043603

Following gene: 78043983

Centisome position: 21.54

GC content: 39.32

Gene sequence:

>819_bases
ATGTTAAAAACAAAGGTATTTCGGGAAGTTTTAGCAATTAAAATGGGAAGAACCATCTTTGGCAAATTATTGTATCCCGT
TCATGCTTTTTATTTTGATGGGGTATTAATCGATACCGGTTGCTGGCACTGCCGCTTTGAATTTAGTTCTTTTCTCAAGG
AATTAAATATTGATAAGGTTATTTTAACCCACGCCCATGAAGACCATTTTGGCAATGTTTGGGCTGCAGAAAAATGGCAA
ATTCCAGTGTATGTGGAAGAAAAGGGCCTACCTTTTTTACAGGAACCGCGAAGATTAAAGATGGAGCTCTACCGGAAGAT
AACTTGGGGGGAACCGGCAAAAGCCAAAGCCCTACCTTTACCCCAATTGGTAGAAACGCAGCATTTTACCCTGGAAGTAA
TAAAAACCCCCGGGCACAGTCCGGACCATGTCTGTTTTTATGAACCGGAAAACGGTTACTTATTTTCCGGAGACCTGTAC
TTAGGGGAACGCCAGAACTTGTTAATGTATACTGAAAATTTTTGGGAAATTAGAAATTCTTTAAAAAAGGTGTTAGCTTT
AAACCCTAAAATCCTTTTTTGCGGTTTAAACGGGTATGTCCCCGGGGCTTCAGAAAAATTAAGAGCAAAACTTAACTACT
GGGATGATTTAGCCGGTAAGGTCTTAGATTTGGCAGACAGGGGATTTAGTTTGAAGGAAATCAACCAACTAATGTTTAAA
AAGAAACATTTTATTTCCATAGTTTCCGGCGGTTCTTTTTCTTCATTAAACCTTGTCCGGTCAATAATTAGAGACCGGAA
GGACGGGGAAGAAATTTAA

Upstream 100 bases:

>100_bases
TCTCATGGCGGTAGCGAGAGCCCGGGAGAGGTCGCGGTGGTTCCCCTCAGAACCCCCGGGCTTTAGCCCTGGGGAGGCTC
AGAAAAGAGGTAATATCGCG

Downstream 100 bases:

>100_bases
CAAAAATTTACCTGGACCCGTTACTGGGTCCTTTTAATTTTTATTACCCGTGTAAGAAATTTGTAAGAAATGAAAGTTAT
TATTATAACAAACATAGTTA

Product: metallo-beta-lactamase family protein

Products: NA

Alternate protein names: Metallo-Beta-Lactamase Family Protein; Beta-Lactamase Domain-Containing Protein; Zn-Dependent Hydrolase

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLKTKVFREVLAIKMGRTIFGKLLYPVHAFYFDGVLIDTGCWHCRFEFSSFLKELNIDKVILTHAHEDHFGNVWAAEKWQ
IPVYVEEKGLPFLQEPRRLKMELYRKITWGEPAKAKALPLPQLVETQHFTLEVIKTPGHSPDHVCFYEPENGYLFSGDLY
LGERQNLLMYTENFWEIRNSLKKVLALNPKILFCGLNGYVPGASEKLRAKLNYWDDLAGKVLDLADRGFSLKEINQLMFK
KKHFISIVSGGSFSSLNLVRSIIRDRKDGEEI

Sequences:

>Translated_272_residues
MLKTKVFREVLAIKMGRTIFGKLLYPVHAFYFDGVLIDTGCWHCRFEFSSFLKELNIDKVILTHAHEDHFGNVWAAEKWQ
IPVYVEEKGLPFLQEPRRLKMELYRKITWGEPAKAKALPLPQLVETQHFTLEVIKTPGHSPDHVCFYEPENGYLFSGDLY
LGERQNLLMYTENFWEIRNSLKKVLALNPKILFCGLNGYVPGASEKLRAKLNYWDDLAGKVLDLADRGFSLKEINQLMFK
KKHFISIVSGGSFSSLNLVRSIIRDRKDGEEI
>Mature_272_residues
MLKTKVFREVLAIKMGRTIFGKLLYPVHAFYFDGVLIDTGCWHCRFEFSSFLKELNIDKVILTHAHEDHFGNVWAAEKWQ
IPVYVEEKGLPFLQEPRRLKMELYRKITWGEPAKAKALPLPQLVETQHFTLEVIKTPGHSPDHVCFYEPENGYLFSGDLY
LGERQNLLMYTENFWEIRNSLKKVLALNPKILFCGLNGYVPGASEKLRAKLNYWDDLAGKVLDLADRGFSLKEINQLMFK
KKHFISIVSGGSFSSLNLVRSIIRDRKDGEEI

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31515; Mature: 31515

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTKVFREVLAIKMGRTIFGKLLYPVHAFYFDGVLIDTGCWHCRFEFSSFLKELNIDKV
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHHCCCCEE
ILTHAHEDHFGNVWAAEKWQIPVYVEEKGLPFLQEPRRLKMELYRKITWGEPAKAKALPL
EEEECCCCCCCCEEECCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
PQLVETQHFTLEVIKTPGHSPDHVCFYEPENGYLFSGDLYLGERQNLLMYTENFWEIRNS
HHHHCCCCEEEEEEECCCCCCCEEEEEECCCCEEEECEEEECCCCCEEEEHHHHHHHHHH
LKKVLALNPKILFCGLNGYVPGASEKLRAKLNYWDDLAGKVLDLADRGFSLKEINQLMFK
HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KKHFISIVSGGSFSSLNLVRSIIRDRKDGEEI
HHHEEEEECCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLKTKVFREVLAIKMGRTIFGKLLYPVHAFYFDGVLIDTGCWHCRFEFSSFLKELNIDKV
CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHHCCCCEE
ILTHAHEDHFGNVWAAEKWQIPVYVEEKGLPFLQEPRRLKMELYRKITWGEPAKAKALPL
EEEECCCCCCCCEEECCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
PQLVETQHFTLEVIKTPGHSPDHVCFYEPENGYLFSGDLYLGERQNLLMYTENFWEIRNS
HHHHCCCCEEEEEEECCCCCCCEEEEEECCCCEEEECEEEECCCCCEEEEHHHHHHHHHH
LKKVLALNPKILFCGLNGYVPGASEKLRAKLNYWDDLAGKVLDLADRGFSLKEINQLMFK
HHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
KKHFISIVSGGSFSSLNLVRSIIRDRKDGEEI
HHHEEEEECCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA