Click here to switch to the map view.

The map label for this gene is ybbK [C]

Identifier: 78044579

GI number: 78044579

Start: 760717

End: 761496

Strand: Direct

Name: ybbK [C]

Synonym: CHY_0857

Alternate gene names: 78044579

Gene position: 760717-761496 (Clockwise)

Preceding gene: 78044964

Following gene: 78043827

Centisome position: 31.68

GC content: 47.82

Gene sequence:

>780_bases
ATGGAGATTATTGGTGCCCTTTTAGGGGCAATGGGCCCGCTTCTGGTTTTAATCCTGTTTTTTCTTTTCTCGGCCGTTAA
AGTTATTCGCGAGTACGAACGGGCGGTAATCTTTCGCCTGGGTAGAGTTATCGGTGCTAAAGGGCCGGGACTTATCATTG
TAATACCCATTATTGATAAGGTCTGGAAAGTTGACCTGCGGACGGTGGCTATGGATGTACCACCGCAGGAAGTAATCACC
CGGGATAACGTACCGATAAAAGTAGATGCGGTGGTGTATTTTCGGGTTATGGACCCGGTAAAAGCGGTGGTGGAAGTAGA
AAATTATATTTATGCCACCTCCCAGTTTTCTCAAACAACTTTAAGGTCGGTGCTGGGTCAGGCGGAACTGGATGACGTTT
TAACCAAACGGGAAGCGATAAACCACGAGCTTCAGAAAATCATCGATGAAGCTACGGATCCCTGGGGGATTAAGGTTACT
TCTGTGGAGTTAAAAGCGGTAGAACTGCCCGAAGGGATGAAGCGGGCCATGGCCAAACAGGCGGAGGCGGAACGGGAGCG
ACGGGCTAAAATTATCTCTGCCGAAGGGGAGTTTCAGGCTGCCGAAAAACTTACCGCTGCTGCAAGCTTGATCGGTCAGG
TACCAACTGCTTTACAACTGCGCTTTTTACAGACTCTGGTGGAAATTTCCGCCGAGAAAAATTCCACCGTTTTATTCCCC
TTCCCCATAGAGTTAGTAGAGCCTTTTCTGAAAAAAATGACGCAAAATCAGGACAAATAA

Upstream 100 bases:

>100_bases
ACCACGGGGTACACCGGTAAAGGTGATAGGGGTTAACGGGTTGACCCTGGTGGTGGATGAGGTTAACGAAAGTTAAAATA
ACTTTTCTGGAGGGATGTAA

Downstream 100 bases:

>100_bases
GCGGGGATTTTTACTGAATTTACAAGGCTGGCCGAAGTAGGCCAGTCTTATTTATTTCCATTAGATATTAATTTTCTTAC
CCGGAGGGGTTTTTTGCACC

Product: SPFH domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MEIIGALLGAMGPLLVLILFFLFSAVKVIREYERAVIFRLGRVIGAKGPGLIIVIPIIDKVWKVDLRTVAMDVPPQEVIT
RDNVPIKVDAVVYFRVMDPVKAVVEVENYIYATSQFSQTTLRSVLGQAELDDVLTKREAINHELQKIIDEATDPWGIKVT
SVELKAVELPEGMKRAMAKQAEAERERRAKIISAEGEFQAAEKLTAAASLIGQVPTALQLRFLQTLVEISAEKNSTVLFP
FPIELVEPFLKKMTQNQDK

Sequences:

>Translated_259_residues
MEIIGALLGAMGPLLVLILFFLFSAVKVIREYERAVIFRLGRVIGAKGPGLIIVIPIIDKVWKVDLRTVAMDVPPQEVIT
RDNVPIKVDAVVYFRVMDPVKAVVEVENYIYATSQFSQTTLRSVLGQAELDDVLTKREAINHELQKIIDEATDPWGIKVT
SVELKAVELPEGMKRAMAKQAEAERERRAKIISAEGEFQAAEKLTAAASLIGQVPTALQLRFLQTLVEISAEKNSTVLFP
FPIELVEPFLKKMTQNQDK
>Mature_259_residues
MEIIGALLGAMGPLLVLILFFLFSAVKVIREYERAVIFRLGRVIGAKGPGLIIVIPIIDKVWKVDLRTVAMDVPPQEVIT
RDNVPIKVDAVVYFRVMDPVKAVVEVENYIYATSQFSQTTLRSVLGQAELDDVLTKREAINHELQKIIDEATDPWGIKVT
SVELKAVELPEGMKRAMAKQAEAERERRAKIISAEGEFQAAEKLTAAASLIGQVPTALQLRFLQTLVEISAEKNSTVLFP
FPIELVEPFLKKMTQNQDK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI38016911, Length=248, Percent_Identity=50.8064516129032, Blast_Score=232, Evalue=2e-61,
Organism=Homo sapiens, GI221316744, Length=251, Percent_Identity=48.605577689243, Blast_Score=232, Evalue=3e-61,
Organism=Homo sapiens, GI21686995, Length=251, Percent_Identity=48.605577689243, Blast_Score=231, Evalue=5e-61,
Organism=Homo sapiens, GI7657615, Length=249, Percent_Identity=37.3493975903614, Blast_Score=167, Evalue=9e-42,
Organism=Homo sapiens, GI7305503, Length=167, Percent_Identity=40.7185628742515, Blast_Score=138, Evalue=5e-33,
Organism=Homo sapiens, GI20149563, Length=168, Percent_Identity=35.7142857142857, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI38016907, Length=58, Percent_Identity=53.448275862069, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI1786697, Length=190, Percent_Identity=38.9473684210526, Blast_Score=146, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI71987612, Length=246, Percent_Identity=52.4390243902439, Blast_Score=240, Evalue=4e-64,
Organism=Caenorhabditis elegans, GI25153583, Length=246, Percent_Identity=52.4390243902439, Blast_Score=240, Evalue=6e-64,
Organism=Caenorhabditis elegans, GI71987621, Length=253, Percent_Identity=51.3833992094862, Blast_Score=238, Evalue=3e-63,
Organism=Caenorhabditis elegans, GI17569493, Length=240, Percent_Identity=48.75, Blast_Score=236, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI193209764, Length=240, Percent_Identity=48.75, Blast_Score=235, Evalue=2e-62,
Organism=Caenorhabditis elegans, GI71989948, Length=238, Percent_Identity=50.4201680672269, Blast_Score=228, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI193210507, Length=254, Percent_Identity=49.6062992125984, Blast_Score=228, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17569499, Length=254, Percent_Identity=48.8188976377953, Blast_Score=228, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17570161, Length=254, Percent_Identity=49.6062992125984, Blast_Score=228, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI17570459, Length=237, Percent_Identity=49.3670886075949, Blast_Score=226, Evalue=1e-59,
Organism=Caenorhabditis elegans, GI17569497, Length=249, Percent_Identity=45.3815261044177, Blast_Score=225, Evalue=2e-59,
Organism=Caenorhabditis elegans, GI32566490, Length=237, Percent_Identity=49.789029535865, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI71989955, Length=185, Percent_Identity=51.8918918918919, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI71989963, Length=123, Percent_Identity=52.8455284552846, Blast_Score=136, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI32564147, Length=180, Percent_Identity=38.3333333333333, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI17542664, Length=178, Percent_Identity=30.3370786516854, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI45556022, Length=248, Percent_Identity=53.6290322580645, Blast_Score=259, Evalue=9e-70,
Organism=Drosophila melanogaster, GI18860517, Length=235, Percent_Identity=52.7659574468085, Blast_Score=239, Evalue=1e-63,
Organism=Drosophila melanogaster, GI62484448, Length=252, Percent_Identity=52.7777777777778, Blast_Score=236, Evalue=1e-62,
Organism=Drosophila melanogaster, GI24657857, Length=241, Percent_Identity=53.9419087136929, Blast_Score=235, Evalue=2e-62,
Organism=Drosophila melanogaster, GI281365664, Length=241, Percent_Identity=53.9419087136929, Blast_Score=235, Evalue=2e-62,
Organism=Drosophila melanogaster, GI62484274, Length=252, Percent_Identity=52.7777777777778, Blast_Score=234, Evalue=3e-62,
Organism=Drosophila melanogaster, GI21356845, Length=237, Percent_Identity=39.662447257384, Blast_Score=200, Evalue=7e-52,
Organism=Drosophila melanogaster, GI28573263, Length=241, Percent_Identity=41.9087136929461, Blast_Score=198, Evalue=3e-51,
Organism=Drosophila melanogaster, GI281361631, Length=238, Percent_Identity=38.2352941176471, Blast_Score=193, Evalue=9e-50,
Organism=Drosophila melanogaster, GI281361633, Length=238, Percent_Identity=38.2352941176471, Blast_Score=193, Evalue=1e-49,
Organism=Drosophila melanogaster, GI281361635, Length=185, Percent_Identity=38.9189189189189, Blast_Score=150, Evalue=9e-37,
Organism=Drosophila melanogaster, GI45550506, Length=188, Percent_Identity=37.7659574468085, Blast_Score=134, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28868; Mature: 28868

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIIGALLGAMGPLLVLILFFLFSAVKVIREYERAVIFRLGRVIGAKGPGLIIVIPIIDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
VWKVDLRTVAMDVPPQEVITRDNVPIKVDAVVYFRVMDPVKAVVEVENYIYATSQFSQTT
HHHHHHHHHEECCCHHHHHCCCCCCEEEHHEEEEHHHHHHHHHHHHHHHHEECCHHHHHH
LRSVLGQAELDDVLTKREAINHELQKIIDEATDPWGIKVTSVELKAVELPEGMKRAMAKQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHH
AEAERERRAKIISAEGEFQAAEKLTAAASLIGQVPTALQLRFLQTLVEISAEKNSTVLFP
HHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEE
FPIELVEPFLKKMTQNQDK
CCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEIIGALLGAMGPLLVLILFFLFSAVKVIREYERAVIFRLGRVIGAKGPGLIIVIPIIDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHH
VWKVDLRTVAMDVPPQEVITRDNVPIKVDAVVYFRVMDPVKAVVEVENYIYATSQFSQTT
HHHHHHHHHEECCCHHHHHCCCCCCEEEHHEEEEHHHHHHHHHHHHHHHHEECCHHHHHH
LRSVLGQAELDDVLTKREAINHELQKIIDEATDPWGIKVTSVELKAVELPEGMKRAMAKQ
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEECCCHHHHHHHHHH
AEAERERRAKIISAEGEFQAAEKLTAAASLIGQVPTALQLRFLQTLVEISAEKNSTVLFP
HHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEE
FPIELVEPFLKKMTQNQDK
CCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]