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The map label for this gene is tapC [H]

Identifier: 77761128

GI number: 77761128

Start: 1272464

End: 1273663

Strand: Reverse

Name: tapC [H]

Synonym: XC_1057

Alternate gene names: 77761128

Gene position: 1273663-1272464 (Counterclockwise)

Preceding gene: 66767389

Following gene: 66767384

Centisome position: 24.74

GC content: 47.75

Gene sequence:

>1200_bases
ATGGTCCCATTTGTCTGGGAGGGTACGGACAAGCGCGGCATCAAGATGAAGGGGGAACAACCTGCTCGCAACGCGAACAT
GCTCCGCGCTGAGCTTCGGCGGCAGGGCATCACACCTTTAGTTGTAAAGACGAAGCCTAAGCCGCTTTTCGGCGCCGCTG
GCAAGAAAATTTCTTCAAAAGATATCGCATTTTTCAGTCGCCAGATGGCAACAATGATGAAGTCGGGCGTACCTATTGTT
GGATCGCTTGAAATCATCGGAGAGGGGCACAAAAATCCCCGCATGAAAAAAATGGTTGGTCAAATTAGGACCGACATTGA
AGGAGGGTCTTCACTCCATGAAGCAATTTCTAGGCATCCAGTCCAATTCGACGACCTCTATCGAAATTTGGTACGAGCAG
GCGAAGGTGCCGGCGTTCTAGAAACCGTTTTAGACACAGTTGCAAATTACAAAGAAAACATTGAAGCACTGAAGGGAAAA
ATAAAGAAAGCTTTATTTTATCCTGCAATGGTAATGGCCGTTGCAATTATTGTGAGCGGAATATTACTTGTATTTGTTGT
CCCGCAATTTGAAGACGTATTCAAAGGATTCGGAGCAGAACTACCAGCTTTCACTCAGATGATCGTCGCGGCGTCGCGTT
TCATGGTGTCTTATTGGTGGCTTATGCTACTTGGTAGCATCGCAGCAATTGCAGGATTCATTTTTGCTTACAAGCGCTCG
CCTCGCATGCGACATGGAATGGATAGATTGGTCTTGAAGGTCCCAGTCATTGGCCAGATCATGCATAATAGCTCTATCGC
CCGATTTGCGCGAACCACTGCCGTTACGTTCAAAGCTGGCGTTCCTTTAGTTGAAGCCTTGAGCATTGTGGCTGGCGCCA
CCGGTAATAAAGTTTATGAGGAAGCTGTGCTTCGTATGCGCGATGATGTCTCGGTAGGCTACCCTGTCAACATGGCGATG
AAGCAGGTCAATCTTTTCCCACACATGGTGGTTCAGATGACCTCGATCGGCGAAGAAGCTGGCGCCCTGGATGCCATGTT
GTTCAAAGTGGCTGAATATTTCGAGCAAGAAGTTAATAACGCCGTGGATGCATTGAGCAGCTTACTGGAACCATTGATCA
TGGTTTTTATTGGCACAATTGTGGGCGGCATGGTCATTGGCATGTATCTTCCCATCTTCAAACTTGGCTCAGTGGTCTAA

Upstream 100 bases:

>100_bases
CTATTGGCGAGCACCGGCCTGGGGATGGTCGCGGGGAATAGTTATGTCAATCGCTCGTAGCAGCATGAAGAAGCAGCCGA
TAGACCGGAACGTAAACGAG

Downstream 100 bases:

>100_bases
AACGTAATGGCATTTCTCGACCAGCATCCCGGTCTCGGCTTTCCCGCCGCGGCCGGACTGGGACTGCTGATCGGCAGCTT
CCTGAATGTAGTGATCCTGC

Product: fimbrial assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MVPFVWEGTDKRGIKMKGEQPARNANMLRAELRRQGITPLVVKTKPKPLFGAAGKKISSKDIAFFSRQMATMMKSGVPIV
GSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISRHPVQFDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGK
IKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSIAAIAGFIFAYKRS
PRMRHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAM
KQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGSVV

Sequences:

>Translated_399_residues
MVPFVWEGTDKRGIKMKGEQPARNANMLRAELRRQGITPLVVKTKPKPLFGAAGKKISSKDIAFFSRQMATMMKSGVPIV
GSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISRHPVQFDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGK
IKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSIAAIAGFIFAYKRS
PRMRHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAM
KQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGSVV
>Mature_399_residues
MVPFVWEGTDKRGIKMKGEQPARNANMLRAELRRQGITPLVVKTKPKPLFGAAGKKISSKDIAFFSRQMATMMKSGVPIV
GSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISRHPVQFDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGK
IKKALFYPAMVMAVAIIVSGILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSIAAIAGFIFAYKRS
PRMRHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYEEAVLRMRDDVSVGYPVNMAM
KQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGSVV

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=398, Percent_Identity=28.1407035175879, Blast_Score=194, Evalue=9e-51,
Organism=Escherichia coli, GI1786295, Length=395, Percent_Identity=28.6075949367089, Blast_Score=170, Evalue=1e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 43722; Mature: 43722

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPFVWEGTDKRGIKMKGEQPARNANMLRAELRRQGITPLVVKTKPKPLFGAAGKKISSK
CCCCEECCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISRHP
HHHHHHHHHHHHHHCCCCCEEEHHEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCC
VQFDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSG
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSIAAIAGFIFAYKRS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRMRHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHH
EAVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNN
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
AVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGSVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MVPFVWEGTDKRGIKMKGEQPARNANMLRAELRRQGITPLVVKTKPKPLFGAAGKKISSK
CCCCEECCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
DIAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLHEAISRHP
HHHHHHHHHHHHHHCCCCCEEEHHEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCC
VQFDDLYRNLVRAGEGAGVLETVLDTVANYKENIEALKGKIKKALFYPAMVMAVAIIVSG
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILLVFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSYWWLMLLGSIAAIAGFIFAYKRS
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PRMRHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNKVYE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHH
EAVLRMRDDVSVGYPVNMAMKQVNLFPHMVVQMTSIGEEAGALDAMLFKVAEYFEQEVNN
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
AVDALSSLLEPLIMVFIGTIVGGMVIGMYLPIFKLGSVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]