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The map label for this gene is yqhC [H]

Identifier: 77748675

GI number: 77748675

Start: 3329093

End: 3330001

Strand: Direct

Name: yqhC [H]

Synonym: XAC2839

Alternate gene names: 77748675

Gene position: 3329093-3330001 (Clockwise)

Preceding gene: 21243565

Following gene: 21243572

Centisome position: 64.32

GC content: 65.13

Gene sequence:

>909_bases
ATGTCTTCGCTGACCGAGTTGAGCACGATATTGCTGCGTCATGCGCCTGGCGACGGCATGCATCCCACGCAGATCGCCGG
GTTGCAGATCATGCGTAGCGCATCGCCGACCGTAGCCATGCCCACTGTCTACACACCCATGCTGTGCCTGGTGGCGCAAG
GCCGCAAGCAGGCAATGCTCGGCGCGCAGGCGTACTTCTATCACCCGCAGATGTACCTGGTGGCGTCGGTGGATCTGCCC
ATCGTCGGCTCGGTAATCGAAGCCAGCGGCGCGCAACCGTATCTATGCTTCTGCCTGGACCTGGACACCGCGGTGCTCAG
CGAGCTGGCGATCAACCATCCGGAACTGGTGGACACGCAGCGCGATGCGGCATCGGCCGGGCTGTTACTCAATCGCAGCA
CGCCGCAGTTGCAGGACGCGGCGCTACGGCTGGCGCGCCTGCTCGATCAACCGCATGAAATTGCCGCGCTCGCGCCCTTG
ATCGTGCGCGAACTGCTGTACCGCCTGATGGCCGACCCGGCCAATGCGGCGGTGCGCCAGATGGCCATCGCCGACAGCCG
GCTCAACCAGATTTCCAGGGCCATCGTGTGGTTGCGCGAACACTATGCGCAGCGCTTCAGCATCGAGCAGATCGCCGATC
TCTCGGCGATGAGCCGCTCCACCTTCCATGCGCATTTCAAGGCGGTGACCACGATGACGCCGCTGGACTACCGTTCGCAG
CTGCGCGTGCACGAAGCACGCCGCCTGATGGTGGCCGATGCGCTGACCGCTGCCGACGCCGGCTTCCGGGTTGGTTACGA
GAGCGCGTCGCAGTTCAGCCGCGACTACGCACGCATTCTCGGCATCTCGCCTGCGCGCGATGCGCAACGGCTGCGTGCCA
ACGCGCAGGACGCCACCGAAGCGGCGTGA

Upstream 100 bases:

>100_bases
CGCGACCCGCGCAGCGGACCTTGCCGCCCGTACCACCTGCACTCTTGTACGATCGGTGCCTTCGCGGCTGGACCGCATTG
CACCGTCGACGGGTTGTTGC

Downstream 100 bases:

>100_bases
GGTCTGCCATGCTCAGCACGGGCCGCACAGCGGCCCCTGCAATCCGCCGCCGCGTTCGCTCGCGCTGAGACGGCACCATC
GCCGCGCCAGCATCGGCATC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSSLTELSTILLRHAPGDGMHPTQIAGLQIMRSASPTVAMPTVYTPMLCLVAQGRKQAMLGAQAYFYHPQMYLVASVDLP
IVGSVIEASGAQPYLCFCLDLDTAVLSELAINHPELVDTQRDAASAGLLLNRSTPQLQDAALRLARLLDQPHEIAALAPL
IVRELLYRLMADPANAAVRQMAIADSRLNQISRAIVWLREHYAQRFSIEQIADLSAMSRSTFHAHFKAVTTMTPLDYRSQ
LRVHEARRLMVADALTAADAGFRVGYESASQFSRDYARILGISPARDAQRLRANAQDATEAA

Sequences:

>Translated_302_residues
MSSLTELSTILLRHAPGDGMHPTQIAGLQIMRSASPTVAMPTVYTPMLCLVAQGRKQAMLGAQAYFYHPQMYLVASVDLP
IVGSVIEASGAQPYLCFCLDLDTAVLSELAINHPELVDTQRDAASAGLLLNRSTPQLQDAALRLARLLDQPHEIAALAPL
IVRELLYRLMADPANAAVRQMAIADSRLNQISRAIVWLREHYAQRFSIEQIADLSAMSRSTFHAHFKAVTTMTPLDYRSQ
LRVHEARRLMVADALTAADAGFRVGYESASQFSRDYARILGISPARDAQRLRANAQDATEAA
>Mature_301_residues
SSLTELSTILLRHAPGDGMHPTQIAGLQIMRSASPTVAMPTVYTPMLCLVAQGRKQAMLGAQAYFYHPQMYLVASVDLPI
VGSVIEASGAQPYLCFCLDLDTAVLSELAINHPELVDTQRDAASAGLLLNRSTPQLQDAALRLARLLDQPHEIAALAPLI
VRELLYRLMADPANAAVRQMAIADSRLNQISRAIVWLREHYAQRFSIEQIADLSAMSRSTFHAHFKAVTTMTPLDYRSQL
RVHEARRLMVADALTAADAGFRVGYESASQFSRDYARILGISPARDAQRLRANAQDATEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=266, Percent_Identity=31.203007518797, Blast_Score=149, Evalue=3e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33111; Mature: 32979

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLTELSTILLRHAPGDGMHPTQIAGLQIMRSASPTVAMPTVYTPMLCLVAQGRKQAML
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCHHHHH
GAQAYFYHPQMYLVASVDLPIVGSVIEASGAQPYLCFCLDLDTAVLSELAINHPELVDTQ
HHHHEEECCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCCHHHCCH
RDAASAGLLLNRSTPQLQDAALRLARLLDQPHEIAALAPLIVRELLYRLMADPANAAVRQ
HHHHHHCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MAIADSRLNQISRAIVWLREHYAQRFSIEQIADLSAMSRSTFHAHFKAVTTMTPLDYRSQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LRVHEARRLMVADALTAADAGFRVGYESASQFSRDYARILGISPARDAQRLRANAQDATE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHCC
AA
CC
>Mature Secondary Structure 
SSLTELSTILLRHAPGDGMHPTQIAGLQIMRSASPTVAMPTVYTPMLCLVAQGRKQAML
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEECCHHHHHHHHHHHCCCHHHHH
GAQAYFYHPQMYLVASVDLPIVGSVIEASGAQPYLCFCLDLDTAVLSELAINHPELVDTQ
HHHHEEECCCEEEEEECCCCHHHHHHHCCCCCCEEEEEEECCHHHHHHHHCCCCHHHCCH
RDAASAGLLLNRSTPQLQDAALRLARLLDQPHEIAALAPLIVRELLYRLMADPANAAVRQ
HHHHHHCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
MAIADSRLNQISRAIVWLREHYAQRFSIEQIADLSAMSRSTFHAHFKAVTTMTPLDYRSQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LRVHEARRLMVADALTAADAGFRVGYESASQFSRDYARILGISPARDAQRLRANAQDATE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHCC
AA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]