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The map label for this gene is ycdC [C]

Identifier: 21243572

GI number: 21243572

Start: 3337365

End: 3337985

Strand: Direct

Name: ycdC [C]

Synonym: XAC2845

Alternate gene names: 21243572

Gene position: 3337365-3337985 (Clockwise)

Preceding gene: 77748675

Following gene: 21243580

Centisome position: 64.48

GC content: 64.09

Gene sequence:

>621_bases
ATGCGGGTCAGAACAGAAGAAAAGCGCGAGGCCATCGTCCAGGCGGCCAGCGAGGTCTTCCTCGAGCTGGGCTTCGAAGG
CGCGTCGATGTCGCAGATCGCCGCCCGCGTGGGCGGCTCCAAGCGCACGCTGTACGGCTATTTTCCGTCAAAGGAAGAGC
TGTTCGTGGCCGTCGCCAACGACATGTCGGACCGCTATTTCGACCCGTTGCTGCATGCGCTTTCGCAAAGCAGCGGCCCG
GTCGATGAGGCGCTGCAGCGCTTCGGCGAGGATGTGCTGACGTTCCTGTGCGCCCCGCCCAATATCACCAGCTGGCAGAC
CATCATCGGGGTATCCGGCAGATCTGCGGTCGGCGCGCTGTATTTCAGCGCCGGCCAGGAGGAAGGCATACAACGCTTCG
CCGAATACCTGCAGGCACAGGTGGACTGCGGCCTGCTCCACTGCGAAGACACCCTGCTTGCCGCCCACCAGTACGCTGGC
TTGCTGGAATCGGAAACCTTGATGCCCTGCCTGTTTGGCGCACTCAAGGACCCCACGCCCGAGTTCCTGCGCGAAGCGAC
GCGACGTGCGGTGCAGACGTTTCTGGCCGCGTACGGCGGCAAGGCAGGCAAAGCGGCGTGA

Upstream 100 bases:

>100_bases
TTAAATCTAAACGGTACGGTTTGGTATCCTAATAAGCGCATCCAGAGCCGTCAAGCATTTCTACCCAGTCGGTATACTTA
TGAATTATTGGGAGAACCTG

Downstream 100 bases:

>100_bases
CGTCGGTTGCGACTTCACTGCATTGCTGCGCGACGACGCGCAGTGCGCGCGTACAGACGCCAAGCCTGCGGTCCACTCGG
GCGTCTACCCTACCCCGCCG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcription Regulator Protein; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; TetR-Type Transcriptional Regulator; Transcriptional Regulator TetR/AcrR Family; Transcription Regulator Protein TetR Family; Transcriptional Regulator Protein Tetr Family; TetR-Like Virulence Regulator; TetR Family Transcriptional RegulatoR; Regulatory Protein Tetr; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; Transcriptional Regulator Protein; Transcription Regulator Protein Tetr Family; TetR Family Regulatory Protein; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVANDMSDRYFDPLLHALSQSSGP
VDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGALYFSAGQEEGIQRFAEYLQAQVDCGLLHCEDTLLAAHQYAG
LLESETLMPCLFGALKDPTPEFLREATRRAVQTFLAAYGGKAGKAA

Sequences:

>Translated_206_residues
MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVANDMSDRYFDPLLHALSQSSGP
VDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGALYFSAGQEEGIQRFAEYLQAQVDCGLLHCEDTLLAAHQYAG
LLESETLMPCLFGALKDPTPEFLREATRRAVQTFLAAYGGKAGKAA
>Mature_206_residues
MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVANDMSDRYFDPLLHALSQSSGP
VDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGALYFSAGQEEGIQRFAEYLQAQVDCGLLHCEDTLLAAHQYAG
LLESETLMPCLFGALKDPTPEFLREATRRAVQTFLAAYGGKAGKAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22412; Mature: 22412

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVAN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEHHH
DMSDRYFDPLLHALSQSSGPVDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGAL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHH
YFSAGQEEGIQRFAEYLQAQVDCGLLHCEDTLLAAHQYAGLLESETLMPCLFGALKDPTP
HHHCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH
EFLREATRRAVQTFLAAYGGKAGKAA
HHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRVRTEEKREAIVQAASEVFLELGFEGASMSQIAARVGGSKRTLYGYFPSKEELFVAVAN
CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEECCCCCCEEEEHHH
DMSDRYFDPLLHALSQSSGPVDEALQRFGEDVLTFLCAPPNITSWQTIIGVSGRSAVGAL
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHH
YFSAGQEEGIQRFAEYLQAQVDCGLLHCEDTLLAAHQYAGLLESETLMPCLFGALKDPTP
HHHCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCH
EFLREATRRAVQTFLAAYGGKAGKAA
HHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA