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The map label for this gene is yeaT [C]

Identifier: 21243565

GI number: 21243565

Start: 3327429

End: 3328343

Strand: Direct

Name: yeaT [C]

Synonym: XAC2838

Alternate gene names: 21243565

Gene position: 3327429-3328343 (Clockwise)

Preceding gene: 21243561

Following gene: 77748675

Centisome position: 64.29

GC content: 69.4

Gene sequence:

>915_bases
ATGGACCGTCTTGGCGACATTGCCCTGTTCCTGCGCGTGCTCGACCTGGGCTCGATCACCGCGGGCGCGCGCAGCCTGGA
TCTGTCGGTGGCGGTGGCCAGCCAGCGTCTCAAGCGCCTGGAACGCGAGCTGGGCGTGCGCCTGCTGCACCGAACCACGC
GCCGCCTGCATCCCACTGCCGAAGGGCAGCGGCTGGCCGAGCGTGGCCGCGTGCTGGTGGAAGATCTGGACGCGCTGGCC
GAGGATCTGCGCGAAAGCGCGCACGATGTGGGTGGCGTGCTGCGCATGACCATGTCCGCCTCATTCGGGCGGCAATACGT
ATCGCCGCTGCTGCCGGAATTCCAGGCCCGCCATCCGCGCCTGCGCATCAGCGCGCACCTCAGCGACGACCTGGTGGACC
TGGTCAAACAGGGCTTCGATCTGGCGATCCGGATCGGCCCACTGGAGGACTCCGGGCTGGTGGCCCGGCGTATCGCCGAC
AACCGCCGTACCCTGGCGGCCTCGCCCGCCTATCTGCAGCGTCACGGCACGCCGCGCACGCCGGACGAGCTTGCACAGCA
CGCCGGCGTGTTGCTGATGGGCCGTGACGGCCGCCAGGACGTGTGGACACTGCAAACGCCCGACGGCGGGCTGGTGCGCG
TGCGCATGCAGAGCCGCTTCGAAAGCAACTTCGGCGAACTGGTGCGCGACGCCGTGGTCGCCGGCCAGGGCATCGCGGTG
CATTCGTATTGGCACATCGCCGACGAATTGCGCAGCGGCCGCCTGGTCCACGTCATGCCCGATTACCCGCCACCGGCCTC
GCAGATCAGCGCAGTGATGCCGGCGCGCCAGTTGCAACCGCCGCGCGTGCGCGCGTTCGTGGATTTCCTGCAGGAGCGGC
TAGGCGAGCAGCCGCCTTGGGAACTGGCGACATAG

Upstream 100 bases:

>100_bases
TGGGCAGGGCCAGGGAGGACTGCGCACAGCCTGCGCCCCGCGTTTACTTTCAAAAACCCCTGCTATGCTGATTCACTTTC
AATCAATCATTGAGAATCGG

Downstream 100 bases:

>100_bases
CGCCCGCCGCGGCGCGCATGGGACCGGGCGGCAGCGGCGGTTGCCGTGCGGATGGCCCCGCAGCGAGACGCGCGCGCCTG
TGCTGGACGCCGGCGTACGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MDRLGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQRLAERGRVLVEDLDALA
EDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAD
NRRTLAASPAYLQRHGTPRTPDELAQHAGVLLMGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV
HSYWHIADELRSGRLVHVMPDYPPPASQISAVMPARQLQPPRVRAFVDFLQERLGEQPPWELAT

Sequences:

>Translated_304_residues
MDRLGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQRLAERGRVLVEDLDALA
EDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAD
NRRTLAASPAYLQRHGTPRTPDELAQHAGVLLMGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV
HSYWHIADELRSGRLVHVMPDYPPPASQISAVMPARQLQPPRVRAFVDFLQERLGEQPPWELAT
>Mature_304_residues
MDRLGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTAEGQRLAERGRVLVEDLDALA
EDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPRLRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIAD
NRRTLAASPAYLQRHGTPRTPDELAQHAGVLLMGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV
HSYWHIADELRSGRLVHVMPDYPPPASQISAVMPARQLQPPRVRAFVDFLQERLGEQPPWELAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=296, Percent_Identity=36.1486486486487, Blast_Score=178, Evalue=4e-46,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=33.3333333333333, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=30.5084745762712, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=30.4054054054054, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=28.0405405405405, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787128, Length=295, Percent_Identity=27.1186440677966, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=27.2108843537415, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788706, Length=284, Percent_Identity=26.4084507042254, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789173, Length=280, Percent_Identity=26.4285714285714, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33886; Mature: 33886

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTA
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EGQRLAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIADNRRTLAASPAYLQRHGTPRT
EEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCEEECCCHHHHHCCCCCC
PDELAQHAGVLLMGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV
HHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEE
HSYWHIADELRSGRLVHVMPDYPPPASQISAVMPARQLQPPRVRAFVDFLQERLGEQPPW
HHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCC
ELAT
CCCC
>Mature Secondary Structure
MDRLGDIALFLRVLDLGSITAGARSLDLSVAVASQRLKRLERELGVRLLHRTTRRLHPTA
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
EGQRLAERGRVLVEDLDALAEDLRESAHDVGGVLRMTMSASFGRQYVSPLLPEFQARHPR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LRISAHLSDDLVDLVKQGFDLAIRIGPLEDSGLVARRIADNRRTLAASPAYLQRHGTPRT
EEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCEEECCCHHHHHCCCCCC
PDELAQHAGVLLMGRDGRQDVWTLQTPDGGLVRVRMQSRFESNFGELVRDAVVAGQGIAV
HHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCEEE
HSYWHIADELRSGRLVHVMPDYPPPASQISAVMPARQLQPPRVRAFVDFLQERLGEQPPW
HHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCC
ELAT
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]