| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is fyuA [H]
Identifier: 77748574
GI number: 77748574
Start: 1460452
End: 1462821
Strand: Direct
Name: fyuA [H]
Synonym: XAC1276
Alternate gene names: 77748574
Gene position: 1460452-1462821 (Clockwise)
Preceding gene: 21242027
Following gene: 77748575
Centisome position: 28.22
GC content: 64.3
Gene sequence:
>2370_bases ATGCCGTTGTACTCGCCTGTCTTTTCGTTGCCGGTGTCCGCTATTGCACAGGTCGCTGCGCGCCGCCGCACCGCCTTGCA GCGCACGCCGCTCGCGCGTGCCTGCGCGTGCCTGTTGCTAGCCTCGTTGGCGGCAACCGCGTCTGCGCAGCAAGCGCCGG CGGCCCAGGGCGAAGCCAGCCCCACCGCGCTGGACACGGTCACCGTCACTGCCGAGCACCGCGAGCAGAACCTGCAGGAC GTGCCGGTCTCGGTCGGCGTGGTGCAGGGCGCAGCGATGCGCGACTACACCGCCGGTGGCGACGACACGCTGCTGGCGCT TTCCGGCCGCGTACCGGGCTTCTACGCCGAAACCACCACCGGGCGCATCTTCCCGCGCTTCTATATCCGTGGCCTGGGCA ATATCGATTTCTACCTGGGTGCCTCGCAGCCGGTGTCCATCATCCAGGACGATGTGGTGCTGGAGCATGTCGTGCTCAAA TCCAATCCGGTCTATGACGTGGACCAGGTCGAAGTGCTGCGCGGCCCGCAAGGCACGCTGTTCGGGCGCAACACCACCGC CGGCATCGTCAAGTTCGATACGGTCAAGCCCAGCGACACCTACACCGGTCGCGTCAACGCCAGCTACGGCAGCTACAACA CTCTCTCGCTGGATGGCGGCTTCGGTGGCCCCATCAACGATGTGCTGTCGTTCCGTGTGTCCGCGTTGTACCAGCACCGC GACGATTGGGTGGACAACACCTTTGCCGGTAGCAGCGCCGACGGCACGCGCACGCCGCGCAAGGACGCGATGGGCGGTTA CAACGACCGCAATGCGCGCTTGCAGGTCTCGCTCAAGCCCAACGATGCGTTCTCGCTGCTGGGCTCGGTGCACACGCGCG ATTACGACGGCACGTCCACCTTGTTCCTGCGCAACGCGATCACGCGTGGCAGCGACAAGGTGGACGTGCCGCGCGACCGC GTGGCCTACGACGAAGGGCACGACAACCCGCAGGCGTATCAAACCGATGGCGGCTCGCTCAAGGCGATTTACGACTTCGG TGGCGTGTCGCTGACCTCCATCACCGCCTACGAAACCACTTCCGGCTACAGCCGTGGCGACACCGATGGCGGTGCTGCCG CCAATTACCCGGTCAATGGCGTGCCGAACGGCTTTGGCCAGTCGATGGGGCAGATCCGCGACCTGGACCAGTACACGCAG GAATTGCGCCTGGCCAGCGAAGGCGACGACGCCCTGCAGTGGCAGGTGGGCGCGTTCTATTTCGACGGCCGCGACATCAC CGATTTCTATCAGCGTGCCTATTTCCTGCAGACCGCCGCGCGCAACCCGAACAACTGGGTGCGCCTGCGCAATACCAATA CCTCGTGGGCCGGCTTCGGTCAGCTCAGCTACAAGGCGACCGACGCGCTGACGCTGACTGCCGGCATCCGCCAGACCAAG GACACCAAGCAAACCCGCCTGCTCAAGACCGCCGATACCGCGGCCGGTGTGGTGACCTACCGCGGCCGGCGCGATGTGCG CATGTCCGATACCCAGCCCAGCTGGGATCTGAGCGCGATGTATGAGATCGATCCGCAGCTGAGTGTGTATGCACGCGTTG CGCGCGGCTTCCGCGGCCCCACCATCCAGGGCCGCAGCGCAGTGTTCAATTCCGATTTCACCACTGCCGATTCGGAAACC ATCCTGTCCTGGGAAGCCGGCATCAAGAGCAGCCTGTTCGAGAACCGTCTGCGCCTGAATGTCAGCGGCTTCACCTACAC GGTCGACGATATCCAGCTCAACGGCAACGACTCGGACGGCAATGGCGTGCTGTTCAATGCCGACAAGGCCAAGGCCTACG GCATGGAAGCGGATCTGGACTGGCGCCCGATCTCCAACCTGTCGATCACCGCCGGCCTGAGCCTGTTGCATAGCGAAATC CACGACGAGCGCGTCTACGCCCAGGTCTGCGCGCTCAATGGCGTGGTGGTGTGCACGGTCAACGACCCGACCATTCGCGT AGGTGCCAACACCTTCGCCCAGATCGACGGCAACCCGCTGCCCAACGCGCCCAAGTACAACCTCAACCTGGCCGCGCGCT ACGACATCCCGGTCGGCAACGACGGCGCGTTCTTCGTGTCCACCGACTGGAACAAGCAGGGCCAGACCAGCTTCGTGCTG TACGACTCCACCGAATTCCGCTCCGACGGCAATTTCGAAGGTGGCCTCAAGCTGGGCTACACCGGTGGCTACGGTGCGTG GGAAGTGGCGGCGTTCGCGCGCAACATCACCAACGAAAAGAACCTCAAGGGCGTGATCGAAAACTACATGGCCGCGGTCT ACAACGAGCCGCGTGTCGTCGGGGTGTCGGTCAACGTCAACTGGCAGTGA
Upstream 100 bases:
>100_bases CGGCGCCACGCGGCGCCACGCGGCGCCGCCAGCAGGCATGCCATGCCAAATGGCTTCGACGCTGTGTCATCACCTCGTAT CACTTCTAGGATCAGTCCGC
Downstream 100 bases:
>100_bases CGGGTTGATCGCCTGATTGCAGTCACTGCGGCGTCTGCGCCGCAGTGATGTTTCCTGCAGGTGGGCAGGCCAGCTGCGTG CATGCGCAGCTGACCTTCGT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: IPR65; IRPC [H]
Number of amino acids: Translated: 789; Mature: 788
Protein sequence:
>789_residues MPLYSPVFSLPVSAIAQVAARRRTALQRTPLARACACLLLASLAATASAQQAPAAQGEASPTALDTVTVTAEHREQNLQD VPVSVGVVQGAAMRDYTAGGDDTLLALSGRVPGFYAETTTGRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLK SNPVYDVDQVEVLRGPQGTLFGRNTTAGIVKFDTVKPSDTYTGRVNASYGSYNTLSLDGGFGGPINDVLSFRVSALYQHR DDWVDNTFAGSSADGTRTPRKDAMGGYNDRNARLQVSLKPNDAFSLLGSVHTRDYDGTSTLFLRNAITRGSDKVDVPRDR VAYDEGHDNPQAYQTDGGSLKAIYDFGGVSLTSITAYETTSGYSRGDTDGGAAANYPVNGVPNGFGQSMGQIRDLDQYTQ ELRLASEGDDALQWQVGAFYFDGRDITDFYQRAYFLQTAARNPNNWVRLRNTNTSWAGFGQLSYKATDALTLTAGIRQTK DTKQTRLLKTADTAAGVVTYRGRRDVRMSDTQPSWDLSAMYEIDPQLSVYARVARGFRGPTIQGRSAVFNSDFTTADSET ILSWEAGIKSSLFENRLRLNVSGFTYTVDDIQLNGNDSDGNGVLFNADKAKAYGMEADLDWRPISNLSITAGLSLLHSEI HDERVYAQVCALNGVVVCTVNDPTIRVGANTFAQIDGNPLPNAPKYNLNLAARYDIPVGNDGAFFVSTDWNKQGQTSFVL YDSTEFRSDGNFEGGLKLGYTGGYGAWEVAAFARNITNEKNLKGVIENYMAAVYNEPRVVGVSVNVNWQ
Sequences:
>Translated_789_residues MPLYSPVFSLPVSAIAQVAARRRTALQRTPLARACACLLLASLAATASAQQAPAAQGEASPTALDTVTVTAEHREQNLQD VPVSVGVVQGAAMRDYTAGGDDTLLALSGRVPGFYAETTTGRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLK SNPVYDVDQVEVLRGPQGTLFGRNTTAGIVKFDTVKPSDTYTGRVNASYGSYNTLSLDGGFGGPINDVLSFRVSALYQHR DDWVDNTFAGSSADGTRTPRKDAMGGYNDRNARLQVSLKPNDAFSLLGSVHTRDYDGTSTLFLRNAITRGSDKVDVPRDR VAYDEGHDNPQAYQTDGGSLKAIYDFGGVSLTSITAYETTSGYSRGDTDGGAAANYPVNGVPNGFGQSMGQIRDLDQYTQ ELRLASEGDDALQWQVGAFYFDGRDITDFYQRAYFLQTAARNPNNWVRLRNTNTSWAGFGQLSYKATDALTLTAGIRQTK DTKQTRLLKTADTAAGVVTYRGRRDVRMSDTQPSWDLSAMYEIDPQLSVYARVARGFRGPTIQGRSAVFNSDFTTADSET ILSWEAGIKSSLFENRLRLNVSGFTYTVDDIQLNGNDSDGNGVLFNADKAKAYGMEADLDWRPISNLSITAGLSLLHSEI HDERVYAQVCALNGVVVCTVNDPTIRVGANTFAQIDGNPLPNAPKYNLNLAARYDIPVGNDGAFFVSTDWNKQGQTSFVL YDSTEFRSDGNFEGGLKLGYTGGYGAWEVAAFARNITNEKNLKGVIENYMAAVYNEPRVVGVSVNVNWQ >Mature_788_residues PLYSPVFSLPVSAIAQVAARRRTALQRTPLARACACLLLASLAATASAQQAPAAQGEASPTALDTVTVTAEHREQNLQDV PVSVGVVQGAAMRDYTAGGDDTLLALSGRVPGFYAETTTGRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLKS NPVYDVDQVEVLRGPQGTLFGRNTTAGIVKFDTVKPSDTYTGRVNASYGSYNTLSLDGGFGGPINDVLSFRVSALYQHRD DWVDNTFAGSSADGTRTPRKDAMGGYNDRNARLQVSLKPNDAFSLLGSVHTRDYDGTSTLFLRNAITRGSDKVDVPRDRV AYDEGHDNPQAYQTDGGSLKAIYDFGGVSLTSITAYETTSGYSRGDTDGGAAANYPVNGVPNGFGQSMGQIRDLDQYTQE LRLASEGDDALQWQVGAFYFDGRDITDFYQRAYFLQTAARNPNNWVRLRNTNTSWAGFGQLSYKATDALTLTAGIRQTKD TKQTRLLKTADTAAGVVTYRGRRDVRMSDTQPSWDLSAMYEIDPQLSVYARVARGFRGPTIQGRSAVFNSDFTTADSETI LSWEAGIKSSLFENRLRLNVSGFTYTVDDIQLNGNDSDGNGVLFNADKAKAYGMEADLDWRPISNLSITAGLSLLHSEIH DERVYAQVCALNGVVVCTVNDPTIRVGANTFAQIDGNPLPNAPKYNLNLAARYDIPVGNDGAFFVSTDWNKQGQTSFVLY DSTEFRSDGNFEGGLKLGYTGGYGAWEVAAFARNITNEKNLKGVIENYMAAVYNEPRVVGVSVNVNWQ
Specific function: Receptor for the bacteriocin pesticin and for the siderophore yersiniabactin [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 85774; Mature: 85643
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLYSPVFSLPVSAIAQVAARRRTALQRTPLARACACLLLASLAATASAQQAPAAQGEAS CCCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCC PTALDTVTVTAEHREQNLQDVPVSVGVVQGAAMRDYTAGGDDTLLALSGRVPGFYAETTT CCEEEEEEEEEHHHHCCCCCCCEEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEECCC GRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLKSNPVYDVDQVEVLRGPQGTL CCCCHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHEECCCCCCCCCHHHEEECCCCCE FGRNTTAGIVKFDTVKPSDTYTGRVNASYGSYNTLSLDGGFGGPINDVLSFRVSALYQHR EECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH DDWVDNTFAGSSADGTRTPRKDAMGGYNDRNARLQVSLKPNDAFSLLGSVHTRDYDGTST CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEE LFLRNAITRGSDKVDVPRDRVAYDEGHDNPQAYQTDGGSLKAIYDFGGVSLTSITAYETT EEEEHHHHCCCCCCCCCHHHCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEEEEEEECC SGYSRGDTDGGAAANYPVNGVPNGFGQSMGQIRDLDQYTQELRLASEGDDALQWQVGAFY CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEE FDGRDITDFYQRAYFLQTAARNPNNWVRLRNTNTSWAGFGQLSYKATDALTLTAGIRQTK ECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEECCEEEEECCCEEEEECCCCCCC DTKQTRLLKTADTAAGVVTYRGRRDVRMSDTQPSWDLSAMYEIDPQLSVYARVARGFRGP CHHHHHEEEECCCCCCEEEECCCCCCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCCC TIQGRSAVFNSDFTTADSETILSWEAGIKSSLFENRLRLNVSGFTYTVDDIQLNGNDSDG CCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHCCCEEEEECCEEEEEEEEEECCCCCCC NGVLFNADKAKAYGMEADLDWRPISNLSITAGLSLLHSEIHDERVYAQVCALNGVVVCTV CEEEEECCCCHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE NDPTIRVGANTFAQIDGNPLPNAPKYNLNLAARYDIPVGNDGAFFVSTDWNKQGQTSFVL CCCEEEECCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEE YDSTEFRSDGNFEGGLKLGYTGGYGAWEVAAFARNITNEKNLKGVIENYMAAVYNEPRVV EECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE GVSVNVNWQ EEEEEEECC >Mature Secondary Structure PLYSPVFSLPVSAIAQVAARRRTALQRTPLARACACLLLASLAATASAQQAPAAQGEAS CCCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHCCCCCCCCCC PTALDTVTVTAEHREQNLQDVPVSVGVVQGAAMRDYTAGGDDTLLALSGRVPGFYAETTT CCEEEEEEEEEHHHHCCCCCCCEEEEEECCCEEECCCCCCCCEEEEEECCCCCEEEECCC GRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLKSNPVYDVDQVEVLRGPQGTL CCCCHHHHEECCCCEEEEECCCCCHHHHHHHHHHHHHEECCCCCCCCCHHHEEECCCCCE FGRNTTAGIVKFDTVKPSDTYTGRVNASYGSYNTLSLDGGFGGPINDVLSFRVSALYQHR EECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH DDWVDNTFAGSSADGTRTPRKDAMGGYNDRNARLQVSLKPNDAFSLLGSVHTRDYDGTST CCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEE LFLRNAITRGSDKVDVPRDRVAYDEGHDNPQAYQTDGGSLKAIYDFGGVSLTSITAYETT EEEEHHHHCCCCCCCCCHHHCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEEEEEEECC SGYSRGDTDGGAAANYPVNGVPNGFGQSMGQIRDLDQYTQELRLASEGDDALQWQVGAFY CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEEEE FDGRDITDFYQRAYFLQTAARNPNNWVRLRNTNTSWAGFGQLSYKATDALTLTAGIRQTK ECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEECCEEEEECCCEEEEECCCCCCC DTKQTRLLKTADTAAGVVTYRGRRDVRMSDTQPSWDLSAMYEIDPQLSVYARVARGFRGP CHHHHHEEEECCCCCCEEEECCCCCCEECCCCCCCCCEEEEEECCCHHHHHHHHCCCCCC TIQGRSAVFNSDFTTADSETILSWEAGIKSSLFENRLRLNVSGFTYTVDDIQLNGNDSDG CCCCCCEEECCCCCCCCCCEEEEECCCHHHHHHCCCEEEEECCEEEEEEEEEECCCCCCC NGVLFNADKAKAYGMEADLDWRPISNLSITAGLSLLHSEIHDERVYAQVCALNGVVVCTV CEEEEECCCCHHCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE NDPTIRVGANTFAQIDGNPLPNAPKYNLNLAARYDIPVGNDGAFFVSTDWNKQGQTSFVL CCCEEEECCCEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEE YDSTEFRSDGNFEGGLKLGYTGGYGAWEVAAFARNITNEKNLKGVIENYMAAVYNEPRVV EECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEE GVSVNVNWQ EEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA