| Definition | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007494 |
| Length | 943,016 |
Click here to switch to the map view.
The map label for this gene is fadJ [H]
Identifier: 77465534
GI number: 77465534
Start: 617158
End: 619125
Strand: Direct
Name: fadJ [H]
Synonym: RSP_3535
Alternate gene names: 77465534
Gene position: 617158-619125 (Clockwise)
Preceding gene: 77465527
Following gene: 77465535
Centisome position: 65.45
GC content: 74.44
Gene sequence:
>1968_bases ATGACCAACGACCTCATCCGGCGCAGCGACTCCGACGGGATCGCGCTTCTGACCCTCGCCAACCCGCCGGTGAACGCGCT GAGCCTCGCGGTGCGCCAGAGGCTCGCCGCGCTGACGGCCGAGCTCGAGGCCGACGAGAGCGTGCGCGCCGTGGTGCTTG CGGCCGAGGGCCGGGTCTTCGTCGGCGGCGCGGACATCGCCGAGTTCGACCGCCCGCCCGAGGCGCCGCACCTGCCCGAT GTGATCGCCGCCATCGAGGCCTCGCGGAAGCCGTGGATCGCGGCGCTGAACGGCGCGGCCCTCGGCGGCGGGGCCGAGCT TGCGCTCGGCTGCCACTACCGGATCTTCGCGGATACCGCCCGGCTGGGCCTGCCGGAGACGAGCCTCGGCCTCATCCCCG GCGCGGGCGGCACGCAGCGCCTGCCGCGCCGGATCGGCCTTGCTCCCGCCATCGAGGTCATCACCGCCGGCCGCACCCTG TCGGCCGCCGAGGCGCGGGAGGCGGGCCTTGCGGACCGGATCGCCGCGGGCGAGCTGATCCCCGAGGCGCTGGCCTTCGC CCGCACCCTCGACGGCGCCCTGCCCCTGCCTGCCTCTGCGGCCCCGCTCGCCGATCCCGGGCCCGCCTTCTGGGACGAGG CCCGCGCGCGCATCGCCAGGGCGGCCCGAGGCAATCCCGCGCCCGCCGCGGCCCTCGAAGCGATCCGCGCGGGCGTGGCG GAAGGCTTCGCCGCGGGTCTCCGCGCCGAGCGCGAGACCTTCCTGCGGCTCCGCGCTTCGGACGAAGCCGCGGCCCTGCG CCATCTCTTCTTCGCCGAGCGTGCGGCCCTGCGCCCGGCCGCCCTTCGCGGCATCGAGCCTGTGCCCCTCACCCGCGCAG GCGTGATCGGCGGCGGCACGATGGGCAGCGGCATCGCGGCCGCCCTCGCCGCGGCCGGGCTGGAGGTGCGTCTCACTGAA ACCGGGCCCGAGTCGCTCGCGGCCGGCCTCGAGCGGGTCGAGGCCATCTTCGAGGCGCAGGTCAAGCGCGGGCTGACGGA TCGGGCCGGCGCGGCGGAGCGGATGGCCCGCGTCACCGGCACGGTCGGTCTCGGGGCGCTGGCGGACTGCGATCTGGTGA TCGAGGCGGTCTTCGAGGATCTCGCCGTCAAGCGCCGGGTGTTCGAAGAGCTGGTCCGTCTTTGCGGGCCCGAGGCGATC CTTGCCACCAACACCTCCTACCTCGATCCCGAACGGATCGTGGAGGGCCTGCCGCACCCCCACCGCTTCATCGCGCTGCA TTTCTTCAGCCCGGCGCAGGTGATGAAGCTGCTCGAGATCGTGCCGCTGGCCGCCACCGCGCCGCGCACCCTCGCCACCG GCGTCGCTCTGGCGGCGCGGCTCGGCAAGATCCCGGTACAGGCGGGCAACGGCGAGGGTTTCATCGGCAACCGCATCCTC AAGCGCTACCGCGCCGAGGCCGAGGCTCTGCTGCTCGCAGGAGCCACCCCGACCGAGATCGACGAGGCCATGCGCGCCTT CGGCCTCGGCATGGGTCCGTTCGAGATGCAGGACATGGCCGGGCTCGACATCGCCTTCCGCGCGCGGGAGGCCGCCCGCG CGCTCGGGCAGGACCTGCCCGAAGGCCCCGGAGACCGGCTGGTGCGCGCAGGCCGCCTCGGCCGCAAGTCGGGCGGCGGC TGGTACGACTATGCGCCGGGCAGCCGCCTTCCCCAGCCGTCGCCGGAGGCAGCCGCTCTGATCGCGCCTCTGGTGACCCC CGGCCCGCGGCCGAGCGGCACCGAGATTGCCGACCGCCTCATCGCCGCCATGGCCGAGGAAGGCCAACGGATCTGCGACG AGGGCCTCGCGCAGAGCCCCTCGGACATCGATCTGGTCGAGGTGCATGGCTACGGCTTCCCCCGTCACAAGGGGGGACCG ATGTTTCACGCCGCGCGCAAGACCCGAAGCCGCACGGGCGGAGCATGA
Upstream 100 bases:
>100_bases ATGGCCTCGCAGCCGTGCTTATTCTGGCCGTGGCCGCCCTCTCGGGAGCGGCCGGGATCCGGCATCCTCCGCGGCAGATC ATCGAAAGGCCGAACCCATC
Downstream 100 bases:
>100_bases CCGGCGCGCTAGAGGCCGGCCGGAGCACATCCACGCAAGGAGGGGCCGATTCGGCCGCACCGACATGACCCAGGTCTTCA TCTGCGACTATATCCGCACG
Product: 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase
Products: NA
Alternate protein names: Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase; 3-hydroxyacyl-CoA dehydrogenase [H]
Number of amino acids: Translated: 655; Mature: 654
Protein sequence:
>655_residues MTNDLIRRSDSDGIALLTLANPPVNALSLAVRQRLAALTAELEADESVRAVVLAAEGRVFVGGADIAEFDRPPEAPHLPD VIAAIEASRKPWIAALNGAALGGGAELALGCHYRIFADTARLGLPETSLGLIPGAGGTQRLPRRIGLAPAIEVITAGRTL SAAEAREAGLADRIAAGELIPEALAFARTLDGALPLPASAAPLADPGPAFWDEARARIARAARGNPAPAAALEAIRAGVA EGFAAGLRAERETFLRLRASDEAAALRHLFFAERAALRPAALRGIEPVPLTRAGVIGGGTMGSGIAAALAAAGLEVRLTE TGPESLAAGLERVEAIFEAQVKRGLTDRAGAAERMARVTGTVGLGALADCDLVIEAVFEDLAVKRRVFEELVRLCGPEAI LATNTSYLDPERIVEGLPHPHRFIALHFFSPAQVMKLLEIVPLAATAPRTLATGVALAARLGKIPVQAGNGEGFIGNRIL KRYRAEAEALLLAGATPTEIDEAMRAFGLGMGPFEMQDMAGLDIAFRAREAARALGQDLPEGPGDRLVRAGRLGRKSGGG WYDYAPGSRLPQPSPEAAALIAPLVTPGPRPSGTEIADRLIAAMAEEGQRICDEGLAQSPSDIDLVEVHGYGFPRHKGGP MFHAARKTRSRTGGA
Sequences:
>Translated_655_residues MTNDLIRRSDSDGIALLTLANPPVNALSLAVRQRLAALTAELEADESVRAVVLAAEGRVFVGGADIAEFDRPPEAPHLPD VIAAIEASRKPWIAALNGAALGGGAELALGCHYRIFADTARLGLPETSLGLIPGAGGTQRLPRRIGLAPAIEVITAGRTL SAAEAREAGLADRIAAGELIPEALAFARTLDGALPLPASAAPLADPGPAFWDEARARIARAARGNPAPAAALEAIRAGVA EGFAAGLRAERETFLRLRASDEAAALRHLFFAERAALRPAALRGIEPVPLTRAGVIGGGTMGSGIAAALAAAGLEVRLTE TGPESLAAGLERVEAIFEAQVKRGLTDRAGAAERMARVTGTVGLGALADCDLVIEAVFEDLAVKRRVFEELVRLCGPEAI LATNTSYLDPERIVEGLPHPHRFIALHFFSPAQVMKLLEIVPLAATAPRTLATGVALAARLGKIPVQAGNGEGFIGNRIL KRYRAEAEALLLAGATPTEIDEAMRAFGLGMGPFEMQDMAGLDIAFRAREAARALGQDLPEGPGDRLVRAGRLGRKSGGG WYDYAPGSRLPQPSPEAAALIAPLVTPGPRPSGTEIADRLIAAMAEEGQRICDEGLAQSPSDIDLVEVHGYGFPRHKGGP MFHAARKTRSRTGGA >Mature_654_residues TNDLIRRSDSDGIALLTLANPPVNALSLAVRQRLAALTAELEADESVRAVVLAAEGRVFVGGADIAEFDRPPEAPHLPDV IAAIEASRKPWIAALNGAALGGGAELALGCHYRIFADTARLGLPETSLGLIPGAGGTQRLPRRIGLAPAIEVITAGRTLS AAEAREAGLADRIAAGELIPEALAFARTLDGALPLPASAAPLADPGPAFWDEARARIARAARGNPAPAAALEAIRAGVAE GFAAGLRAERETFLRLRASDEAAALRHLFFAERAALRPAALRGIEPVPLTRAGVIGGGTMGSGIAAALAAAGLEVRLTET GPESLAAGLERVEAIFEAQVKRGLTDRAGAAERMARVTGTVGLGALADCDLVIEAVFEDLAVKRRVFEELVRLCGPEAIL ATNTSYLDPERIVEGLPHPHRFIALHFFSPAQVMKLLEIVPLAATAPRTLATGVALAARLGKIPVQAGNGEGFIGNRILK RYRAEAEALLLAGATPTEIDEAMRAFGLGMGPFEMQDMAGLDIAFRAREAARALGQDLPEGPGDRLVRAGRLGRKSGGGW YDYAPGSRLPQPSPEAAALIAPLVTPGPRPSGTEIADRLIAAMAEEGQRICDEGLAQSPSDIDLVEVHGYGFPRHKGGPM FHAARKTRSRTGGA
Specific function: Catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities [H]
COG id: COG1250
COG function: function code I; 3-hydroxyacyl-CoA dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: In the central section; belongs to the 3-hydroxyacyl- CoA dehydrogenase family [H]
Homologues:
Organism=Homo sapiens, GI68989263, Length=667, Percent_Identity=38.3808095952024, Blast_Score=421, Evalue=1e-117, Organism=Homo sapiens, GI261878539, Length=577, Percent_Identity=38.9948006932409, Blast_Score=380, Evalue=1e-105, Organism=Homo sapiens, GI20127408, Length=689, Percent_Identity=29.8984034833091, Blast_Score=276, Evalue=6e-74, Organism=Homo sapiens, GI296179429, Length=293, Percent_Identity=33.4470989761092, Blast_Score=148, Evalue=2e-35, Organism=Homo sapiens, GI296179427, Length=310, Percent_Identity=31.6129032258064, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI194097323, Length=197, Percent_Identity=35.0253807106599, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI115430219, Length=230, Percent_Identity=28.2608695652174, Blast_Score=88, Evalue=2e-17, Organism=Homo sapiens, GI4502327, Length=157, Percent_Identity=40.1273885350318, Blast_Score=81, Evalue=4e-15, Organism=Homo sapiens, GI62530384, Length=179, Percent_Identity=34.0782122905028, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI70995211, Length=168, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=5e-12, Organism=Homo sapiens, GI295842266, Length=177, Percent_Identity=31.0734463276836, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI31542718, Length=191, Percent_Identity=28.7958115183246, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1788682, Length=665, Percent_Identity=35.187969924812, Blast_Score=291, Evalue=9e-80, Organism=Escherichia coli, GI1790281, Length=657, Percent_Identity=31.9634703196347, Blast_Score=263, Evalue=3e-71, Organism=Escherichia coli, GI1787661, Length=283, Percent_Identity=37.8091872791519, Blast_Score=162, Evalue=7e-41, Organism=Escherichia coli, GI1787659, Length=264, Percent_Identity=35.9848484848485, Blast_Score=120, Evalue=4e-28, Organism=Escherichia coli, GI221142681, Length=191, Percent_Identity=32.9842931937173, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1787660, Length=191, Percent_Identity=34.0314136125654, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17508953, Length=688, Percent_Identity=31.3953488372093, Blast_Score=281, Evalue=6e-76, Organism=Caenorhabditis elegans, GI17508951, Length=688, Percent_Identity=31.3953488372093, Blast_Score=281, Evalue=6e-76, Organism=Caenorhabditis elegans, GI17558304, Length=669, Percent_Identity=31.390134529148, Blast_Score=281, Evalue=7e-76, Organism=Caenorhabditis elegans, GI25144276, Length=641, Percent_Identity=31.0452418096724, Blast_Score=256, Evalue=2e-68, Organism=Caenorhabditis elegans, GI71985923, Length=364, Percent_Identity=30.7692307692308, Blast_Score=203, Evalue=2e-52, Organism=Caenorhabditis elegans, GI71985930, Length=364, Percent_Identity=31.043956043956, Blast_Score=192, Evalue=5e-49, Organism=Caenorhabditis elegans, GI17553560, Length=282, Percent_Identity=36.8794326241135, Blast_Score=159, Evalue=5e-39, Organism=Caenorhabditis elegans, GI17549919, Length=301, Percent_Identity=33.5548172757475, Blast_Score=137, Evalue=1e-32, Organism=Caenorhabditis elegans, GI17563036, Length=295, Percent_Identity=33.8983050847458, Blast_Score=132, Evalue=5e-31, Organism=Caenorhabditis elegans, GI17554946, Length=201, Percent_Identity=36.81592039801, Blast_Score=111, Evalue=1e-24, Organism=Caenorhabditis elegans, GI25145438, Length=201, Percent_Identity=36.81592039801, Blast_Score=107, Evalue=2e-23, Organism=Caenorhabditis elegans, GI17540714, Length=201, Percent_Identity=34.8258706467662, Blast_Score=105, Evalue=7e-23, Organism=Caenorhabditis elegans, GI17560910, Length=200, Percent_Identity=29, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI19921000, Length=680, Percent_Identity=32.0588235294118, Blast_Score=265, Evalue=5e-71, Organism=Drosophila melanogaster, GI24583077, Length=689, Percent_Identity=31.7851959361393, Blast_Score=265, Evalue=7e-71, Organism=Drosophila melanogaster, GI24583079, Length=689, Percent_Identity=31.7851959361393, Blast_Score=265, Evalue=7e-71, Organism=Drosophila melanogaster, GI20129971, Length=182, Percent_Identity=36.8131868131868, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI24653477, Length=182, Percent_Identity=36.8131868131868, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI24653139, Length=183, Percent_Identity=38.7978142076503, Blast_Score=100, Evalue=4e-21, Organism=Drosophila melanogaster, GI24583165, Length=203, Percent_Identity=33.0049261083744, Blast_Score=95, Evalue=2e-19, Organism=Drosophila melanogaster, GI19921018, Length=200, Percent_Identity=33, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI45549573, Length=232, Percent_Identity=27.5862068965517, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI24650670, Length=160, Percent_Identity=32.5, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI21357171, Length=188, Percent_Identity=31.3829787234043, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI45550169, Length=203, Percent_Identity=26.6009852216749, Blast_Score=72, Evalue=1e-12, Organism=Drosophila melanogaster, GI20129993, Length=224, Percent_Identity=27.2321428571429, Blast_Score=71, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006180 - InterPro: IPR006176 - InterPro: IPR006108 - InterPro: IPR008927 - InterPro: IPR001753 - InterPro: IPR013328 - InterPro: IPR012802 - InterPro: IPR016040 [H]
Pfam domain/function: PF00725 3HCDH; PF02737 3HCDH_N; PF00378 ECH [H]
EC number: =4.2.1.17; =5.1.2.3; =1.1.1.35 [H]
Molecular weight: Translated: 68239; Mature: 68108
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: PS00166 ENOYL_COA_HYDRATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNDLIRRSDSDGIALLTLANPPVNALSLAVRQRLAALTAELEADESVRAVVLAAEGRVF CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEE VGGADIAEFDRPPEAPHLPDVIAAIEASRKPWIAALNGAALGGGAELALGCHYRIFADTA ECCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECEEEEEECHH RLGLPETSLGLIPGAGGTQRLPRRIGLAPAIEVITAGRTLSAAEAREAGLADRIAAGELI HCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH PEALAFARTLDGALPLPASAAPLADPGPAFWDEARARIARAARGNPAPAAALEAIRAGVA HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH EGFAAGLRAERETFLRLRASDEAAALRHLFFAERAALRPAALRGIEPVPLTRAGVIGGGT HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCC MGSGIAAALAAAGLEVRLTETGPESLAAGLERVEAIFEAQVKRGLTDRAGAAERMARVTG CHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC TVGLGALADCDLVIEAVFEDLAVKRRVFEELVRLCGPEAILATNTSYLDPERIVEGLPHP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCC HRFIALHFFSPAQVMKLLEIVPLAATAPRTLATGVALAARLGKIPVQAGNGEGFIGNRIL CEEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHH KRYRAEAEALLLAGATPTEIDEAMRAFGLGMGPFEMQDMAGLDIAFRAREAARALGQDLP HHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC EGPGDRLVRAGRLGRKSGGGWYDYAPGSRLPQPSPEAAALIAPLVTPGPRPSGTEIADRL CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH IAAMAEEGQRICDEGLAQSPSDIDLVEVHGYGFPRHKGGPMFHAARKTRSRTGGA HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure TNDLIRRSDSDGIALLTLANPPVNALSLAVRQRLAALTAELEADESVRAVVLAAEGRVF CCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEE VGGADIAEFDRPPEAPHLPDVIAAIEASRKPWIAALNGAALGGGAELALGCHYRIFADTA ECCCCHHHCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCEEEEECEEEEEECHH RLGLPETSLGLIPGAGGTQRLPRRIGLAPAIEVITAGRTLSAAEAREAGLADRIAAGELI HCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHH PEALAFARTLDGALPLPASAAPLADPGPAFWDEARARIARAARGNPAPAAALEAIRAGVA HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH EGFAAGLRAERETFLRLRASDEAAALRHLFFAERAALRPAALRGIEPVPLTRAGVIGGGT HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCC MGSGIAAALAAAGLEVRLTETGPESLAAGLERVEAIFEAQVKRGLTDRAGAAERMARVTG CHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHC TVGLGALADCDLVIEAVFEDLAVKRRVFEELVRLCGPEAILATNTSYLDPERIVEGLPHP CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCCCC HRFIALHFFSPAQVMKLLEIVPLAATAPRTLATGVALAARLGKIPVQAGNGEGFIGNRIL CEEEEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHH KRYRAEAEALLLAGATPTEIDEAMRAFGLGMGPFEMQDMAGLDIAFRAREAARALGQDLP HHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCC EGPGDRLVRAGRLGRKSGGGWYDYAPGSRLPQPSPEAAALIAPLVTPGPRPSGTEIADRL CCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH IAAMAEEGQRICDEGLAQSPSDIDLVEVHGYGFPRHKGGPMFHAARKTRSRTGGA HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA