| Definition | Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_007494 |
| Length | 943,016 |
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The map label for this gene is gsiB [H]
Identifier: 77465525
GI number: 77465525
Start: 604763
End: 606370
Strand: Reverse
Name: gsiB [H]
Synonym: RSP_3525
Alternate gene names: 77465525
Gene position: 606370-604763 (Counterclockwise)
Preceding gene: 77465528
Following gene: 77465524
Centisome position: 64.3
GC content: 66.11
Gene sequence:
>1608_bases ATGAACAAATCGCACCACCTGCTGATGGACGATCTGGTCACGCGGCTGCGGCGCGGACAGCTGTCGCGTCGCGAGTTTCT GGCCCGCAGTTCGGCGCTGCTGGCGGCCGGCGCCATGAGCGGCCTGCCCGGTGCGGCGCTTGCCCAGCAGGCGGCACCGA AGGCCGGCGGCTTCATGCGGCTCGGCCTGCACAATGCCTCGCAGAACGACAACCTCGATCCCGGCAGCTGGTCGACGAGT TGGACCGGCGCCTCGTTCAACGGCGGCGTCTACAACAACCTCGTCGAGATCCTGCCCGACGGCTCGGTCGCGGGCGATCT GGCCGAGAGCTGGGAGGCGGAGCCCGGCGCGAAGGTCTGGCGCTTCAAGCTGCGCTCGGGCGTGACCTTCCACAACGGCA AGAGCCTCGAGGCGGAAGACGTGCGCCAGTCGCTCGAGCATCACATGAAGCCGGACTCGACCTCGGGCGCGCGCGCCATC GTCGAGCAGATCGAGACCATCGACATCGAAGGGTCCGACACCGTCCGCATCACCCTCTCGGAGGGCAATGCCGACCTGCC CTACCTCCTGTCGGATTATCACCTCTCGATCTATCCGGCGCTGGAGGGCGGCGGGATCGACATGGAGAGCGCCAACGGCA CCGGCGCCTTCCTCCTCGAGAGCTTCGAGCCGGGCATCGCCACCCGCCTCAAGCGGAACCCGAACTACCACAAGAACAAC AAGCCCTATCTCGACGAGGTCGAGTTCATCAACATCACCGACGCCACGGCGCGGCTGAACGCGCTGCTGACCGGCGAGGT CGATTTCATCCAGGATCTCGACATCCGCAACGTGGCGATGGTCGAGCGCAGCGGCGATTTCTCGGTTCAGCGCGTGCCGA GCCTGCGCCACTTCACCTTCGACATGGACACCCGCGTCGCGCCCTTCGACAATCCCGATGTGCGGCTGGCGCTGAAATAT GCGCTCGACCGGGATGACGTGATCGAGAAGGTGTTCCTTGGCGAGGCCACGAAGGGGAACGACAACCCGGTCGCCTCGAT CCAGAAATTCTACCACGACATGCCCGCGCGCGAATACAGCATCGCGAAGGCCAAGGAGCATCTGGCCAAGGCCGGGCTCG ATCAGGTGAGCGTCGATCTGTCGGTGGCCGAGAATGCGTTTGCGGGCGCCATCGAGGCGGCGACGCTCTACCAGCGCCAT GCGGCCGAGGCCGGCATCAACATCAACATCGTGCAGGAGGCGGCCGACGGCTACTGGGAGAACGTCTGGCGCAAGAAGCC CTTCTGCGCGGTCGACTACTTCGGCCGCGCCACCGTCGACTGGCTGTTCTCGACGAGCTATGTCACCGGCGCGCCGTGGA ATTCGGGCTGGTCGAACGCGCGGTTCGACGAGCTGCACCAGACGGCGCGGGCCGAGACCGACGAGGCCAAGCGCGCCGCC TGCTACGCCGAAATGCAGGAGATCCTGCGCGACGACGGCAACGTCATCACCGTGGCCTTCGTGAGCTGGCGCAACGCCGT CTCGAACCGCATCGGCTTCGGCGAGGTCGGCGGGCTGATGCCGCTCGACAACATGCGGATGTGCGAGCGCTGGTGGGTCA AGGACTGA
Upstream 100 bases:
>100_bases CGTGATTTCCATAAGGATCACCGGCAGGTCGGAAGGCTGCGCAAGACAGCTGCATCCCGGCGGGACATCCAAGGATAACC AAACCTGACAGGGTGAACAC
Downstream 100 bases:
>100_bases GGTCGGCAGGCCCGGTCTCAGACGGCCCGGAGCGCGAGGCGCGCCCCGGGCGACATTCCGACATTTTCGTTCAGGGCGGA GAAAACCTGATGCGCTACCC
Product: ABC peptide transporter, periplasmic binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 535; Mature: 535
Protein sequence:
>535_residues MNKSHHLLMDDLVTRLRRGQLSRREFLARSSALLAAGAMSGLPGAALAQQAAPKAGGFMRLGLHNASQNDNLDPGSWSTS WTGASFNGGVYNNLVEILPDGSVAGDLAESWEAEPGAKVWRFKLRSGVTFHNGKSLEAEDVRQSLEHHMKPDSTSGARAI VEQIETIDIEGSDTVRITLSEGNADLPYLLSDYHLSIYPALEGGGIDMESANGTGAFLLESFEPGIATRLKRNPNYHKNN KPYLDEVEFINITDATARLNALLTGEVDFIQDLDIRNVAMVERSGDFSVQRVPSLRHFTFDMDTRVAPFDNPDVRLALKY ALDRDDVIEKVFLGEATKGNDNPVASIQKFYHDMPAREYSIAKAKEHLAKAGLDQVSVDLSVAENAFAGAIEAATLYQRH AAEAGININIVQEAADGYWENVWRKKPFCAVDYFGRATVDWLFSTSYVTGAPWNSGWSNARFDELHQTARAETDEAKRAA CYAEMQEILRDDGNVITVAFVSWRNAVSNRIGFGEVGGLMPLDNMRMCERWWVKD
Sequences:
>Translated_535_residues MNKSHHLLMDDLVTRLRRGQLSRREFLARSSALLAAGAMSGLPGAALAQQAAPKAGGFMRLGLHNASQNDNLDPGSWSTS WTGASFNGGVYNNLVEILPDGSVAGDLAESWEAEPGAKVWRFKLRSGVTFHNGKSLEAEDVRQSLEHHMKPDSTSGARAI VEQIETIDIEGSDTVRITLSEGNADLPYLLSDYHLSIYPALEGGGIDMESANGTGAFLLESFEPGIATRLKRNPNYHKNN KPYLDEVEFINITDATARLNALLTGEVDFIQDLDIRNVAMVERSGDFSVQRVPSLRHFTFDMDTRVAPFDNPDVRLALKY ALDRDDVIEKVFLGEATKGNDNPVASIQKFYHDMPAREYSIAKAKEHLAKAGLDQVSVDLSVAENAFAGAIEAATLYQRH AAEAGININIVQEAADGYWENVWRKKPFCAVDYFGRATVDWLFSTSYVTGAPWNSGWSNARFDELHQTARAETDEAKRAA CYAEMQEILRDDGNVITVAFVSWRNAVSNRIGFGEVGGLMPLDNMRMCERWWVKD >Mature_535_residues MNKSHHLLMDDLVTRLRRGQLSRREFLARSSALLAAGAMSGLPGAALAQQAAPKAGGFMRLGLHNASQNDNLDPGSWSTS WTGASFNGGVYNNLVEILPDGSVAGDLAESWEAEPGAKVWRFKLRSGVTFHNGKSLEAEDVRQSLEHHMKPDSTSGARAI VEQIETIDIEGSDTVRITLSEGNADLPYLLSDYHLSIYPALEGGGIDMESANGTGAFLLESFEPGIATRLKRNPNYHKNN KPYLDEVEFINITDATARLNALLTGEVDFIQDLDIRNVAMVERSGDFSVQRVPSLRHFTFDMDTRVAPFDNPDVRLALKY ALDRDDVIEKVFLGEATKGNDNPVASIQKFYHDMPAREYSIAKAKEHLAKAGLDQVSVDLSVAENAFAGAIEAATLYQRH AAEAGININIVQEAADGYWENVWRKKPFCAVDYFGRATVDWLFSTSYVTGAPWNSGWSNARFDELHQTARAETDEAKRAA CYAEMQEILRDDGNVITVAFVSWRNAVSNRIGFGEVGGLMPLDNMRMCERWWVKD
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787495, Length=562, Percent_Identity=25.0889679715303, Blast_Score=102, Evalue=7e-23, Organism=Escherichia coli, GI1787762, Length=513, Percent_Identity=25.3411306042885, Blast_Score=101, Evalue=1e-22, Organism=Escherichia coli, GI1789966, Length=475, Percent_Identity=24, Blast_Score=101, Evalue=1e-22, Organism=Escherichia coli, GI1787052, Length=403, Percent_Identity=25.5583126550869, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787551, Length=514, Percent_Identity=22.7626459143969, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1789887, Length=294, Percent_Identity=25.5102040816327, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1789397, Length=339, Percent_Identity=25.0737463126844, Blast_Score=72, Evalue=7e-14,
Paralogues:
None
Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 59144; Mature: 59144
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKSHHLLMDDLVTRLRRGQLSRREFLARSSALLAAGAMSGLPGAALAQQAAPKAGGFMR CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEE LGLHNASQNDNLDPGSWSTSWTGASFNGGVYNNLVEILPDGSVAGDLAESWEAEPGAKVW EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEE RFKLRSGVTFHNGKSLEAEDVRQSLEHHMKPDSTSGARAIVEQIETIDIEGSDTVRITLS EEEHHCCCEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEEEEE EGNADLPYLLSDYHLSIYPALEGGGIDMESANGTGAFLLESFEPGIATRLKRNPNYHKNN CCCCCCCEEEECCCEEEEEEECCCCCEEECCCCCCEEEEECCCCCHHHHHCCCCCCCCCC KPYLDEVEFINITDATARLNALLTGEVDFIQDLDIRNVAMVERSGDFSVQRVPSLRHFTF CCCCCCEEEEEEECHHHHHEEEEECCCHHHHCCCCCCEEEEECCCCCCCEECCCCEEEEE DMDTRVAPFDNPDVRLALKYALDRDDVIEKVFLGEATKGNDNPVASIQKFYHDMPAREYS ECCCEECCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHH IAKAKEHLAKAGLDQVSVDLSVAENAFAGAIEAATLYQRHAAEAGININIVQEAADGYWE HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH NVWRKKPFCAVDYFGRATVDWLFSTSYVTGAPWNSGWSNARFDELHQTARAETDEAKRAA HHHCCCCCEEEECCCCCEEHHEEECCEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHH CYAEMQEILRDDGNVITVAFVSWRNAVSNRIGFGEVGGLMPLDNMRMCERWWVKD HHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHCCCC >Mature Secondary Structure MNKSHHLLMDDLVTRLRRGQLSRREFLARSSALLAAGAMSGLPGAALAQQAAPKAGGFMR CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEE LGLHNASQNDNLDPGSWSTSWTGASFNGGVYNNLVEILPDGSVAGDLAESWEAEPGAKVW EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCEE RFKLRSGVTFHNGKSLEAEDVRQSLEHHMKPDSTSGARAIVEQIETIDIEGSDTVRITLS EEEHHCCCEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEEEEE EGNADLPYLLSDYHLSIYPALEGGGIDMESANGTGAFLLESFEPGIATRLKRNPNYHKNN CCCCCCCEEEECCCEEEEEEECCCCCEEECCCCCCEEEEECCCCCHHHHHCCCCCCCCCC KPYLDEVEFINITDATARLNALLTGEVDFIQDLDIRNVAMVERSGDFSVQRVPSLRHFTF CCCCCCEEEEEEECHHHHHEEEEECCCHHHHCCCCCCEEEEECCCCCCCEECCCCEEEEE DMDTRVAPFDNPDVRLALKYALDRDDVIEKVFLGEATKGNDNPVASIQKFYHDMPAREYS ECCCEECCCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHH IAKAKEHLAKAGLDQVSVDLSVAENAFAGAIEAATLYQRHAAEAGININIVQEAADGYWE HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHH NVWRKKPFCAVDYFGRATVDWLFSTSYVTGAPWNSGWSNARFDELHQTARAETDEAKRAA HHHCCCCCEEEECCCCCEEHHEEECCEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHH CYAEMQEILRDDGNVITVAFVSWRNAVSNRIGFGEVGGLMPLDNMRMCERWWVKD HHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA