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The map label for this gene is potC [H]

Identifier: 77465519

GI number: 77465519

Start: 597387

End: 598172

Strand: Direct

Name: potC [H]

Synonym: RSP_3518

Alternate gene names: 77465519

Gene position: 597387-598172 (Clockwise)

Preceding gene: 77465518

Following gene: 77465520

Centisome position: 63.35

GC content: 67.3

Gene sequence:

>786_bases
ATGGCCGCGCGTCTCGCCGTCCGGGCGCTTGCCCTCCTTACCCTCGCCTATCTGGCGCTGCCGCTCGTCGTGGTGATCGG
CGGCTCGCTGACCGAGACCAAGTTCCTGAGCTTCCCGCCGCAGGGCCTGACGCTCGACTGGTATCGGGTGGTGCTGCACG
ATCCGACCTATGTGCGCTCCTTCCTCACGAGCGCGGTGCTGGCGCTCGCCGCCACGCTCTTCGCGCTGGTGATCGGGCTG
CCCGCGGCCATCGCCATCGCCCGGCACAGCTTCCGCGGCAAGGGGCTCCTGAGCGCCCTCCTGCTGTCGCCGCTCGTGCT
GCCCCATATCGTGATCGGCGCGGCGCTGCTGCAATACGGTTCGGCCATCGGCCTCGTGCGGAATTTCCCGGCGCTCCTCG
TGGGGCATGTGGTGATCGTGACGCCCTTCGTGCTGCGCACGCTCTTGCCGCATTTCTCGCCGGGCCAGCGCGCGCTCGAA
GAGGCCTCGCGCGATCTGGGCGCTTCGGGATGGACCACCTTCCGCCTCGTCACCCTGCCGCTGATCCGGCCGGGGCTCGT
GTCGGGCGCGATCTTCGCCTTCATCACCTCGTTCATCAATGTCGAGCTGTCGATCTTCAACACGACGGCGGCGCTGAACA
CGATCCCGGTGCAGCTCTTCAACTACGTCCAGTATTCCGTCGATCCCTCGATCGCCGCGGTCTCGGCGCTCACGATCCTC
GCCGCCGCCGTGGGCATCGTGCTGATCGACCTTCTCATCGGTCTGGATCTCTTGCCCGACAAGTGA

Upstream 100 bases:

>100_bases
GGGGCGCTCTCGATCACGCTCCTCGTGCTGACGCTGGCGCTGATCGGACTGGCCTCGCGGATGACGCGCGGCAGGACGCC
CGGCGCGGGAGGACACTGAC

Downstream 100 bases:

>100_bases
TCCCGGCCCCTCCGCCCCAGCCATCATCCCACAGGAGACAGACATGCGCGTTCAGGACGTGTATAACGTGATCTATACCC
ATACGGAGGGCGAGCCGCTC

Product: ABC polyamine/opine transporter, inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MAARLAVRALALLTLAYLALPLVVVIGGSLTETKFLSFPPQGLTLDWYRVVLHDPTYVRSFLTSAVLALAATLFALVIGL
PAAIAIARHSFRGKGLLSALLLSPLVLPHIVIGAALLQYGSAIGLVRNFPALLVGHVVIVTPFVLRTLLPHFSPGQRALE
EASRDLGASGWTTFRLVTLPLIRPGLVSGAIFAFITSFINVELSIFNTTAALNTIPVQLFNYVQYSVDPSIAAVSALTIL
AAAVGIVLIDLLIGLDLLPDK

Sequences:

>Translated_261_residues
MAARLAVRALALLTLAYLALPLVVVIGGSLTETKFLSFPPQGLTLDWYRVVLHDPTYVRSFLTSAVLALAATLFALVIGL
PAAIAIARHSFRGKGLLSALLLSPLVLPHIVIGAALLQYGSAIGLVRNFPALLVGHVVIVTPFVLRTLLPHFSPGQRALE
EASRDLGASGWTTFRLVTLPLIRPGLVSGAIFAFITSFINVELSIFNTTAALNTIPVQLFNYVQYSVDPSIAAVSALTIL
AAAVGIVLIDLLIGLDLLPDK
>Mature_260_residues
AARLAVRALALLTLAYLALPLVVVIGGSLTETKFLSFPPQGLTLDWYRVVLHDPTYVRSFLTSAVLALAATLFALVIGLP
AAIAIARHSFRGKGLLSALLLSPLVLPHIVIGAALLQYGSAIGLVRNFPALLVGHVVIVTPFVLRTLLPHFSPGQRALEE
ASRDLGASGWTTFRLVTLPLIRPGLVSGAIFAFITSFINVELSIFNTTAALNTIPVQLFNYVQYSVDPSIAAVSALTILA
AAVGIVLIDLLIGLDLLPDK

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=225, Percent_Identity=37.3333333333333, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1787368, Length=207, Percent_Identity=28.9855072463768, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787081, Length=243, Percent_Identity=28.8065843621399, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787369, Length=192, Percent_Identity=31.25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788764, Length=167, Percent_Identity=31.1377245508982, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87082099, Length=153, Percent_Identity=33.9869281045752, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27677; Mature: 27546

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARLAVRALALLTLAYLALPLVVVIGGSLTETKFLSFPPQGLTLDWYRVVLHDPTYVRS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHH
FLTSAVLALAATLFALVIGLPAAIAIARHSFRGKGLLSALLLSPLVLPHIVIGAALLQYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAIGLVRNFPALLVGHVVIVTPFVLRTLLPHFSPGQRALEEASRDLGASGWTTFRLVTLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LIRPGLVSGAIFAFITSFINVELSIFNTTAALNTIPVQLFNYVQYSVDPSIAAVSALTIL
HHCCHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AAAVGIVLIDLLIGLDLLPDK
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AARLAVRALALLTLAYLALPLVVVIGGSLTETKFLSFPPQGLTLDWYRVVLHDPTYVRS
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHH
FLTSAVLALAATLFALVIGLPAAIAIARHSFRGKGLLSALLLSPLVLPHIVIGAALLQYG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAIGLVRNFPALLVGHVVIVTPFVLRTLLPHFSPGQRALEEASRDLGASGWTTFRLVTLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
LIRPGLVSGAIFAFITSFINVELSIFNTTAALNTIPVQLFNYVQYSVDPSIAAVSALTIL
HHCCHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AAAVGIVLIDLLIGLDLLPDK
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]