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The map label for this gene is ttdA [C]

Identifier: 77465160

GI number: 77465160

Start: 195681

End: 196643

Strand: Reverse

Name: ttdA [C]

Synonym: RSP_3146

Alternate gene names: 77465160

Gene position: 196643-195681 (Counterclockwise)

Preceding gene: 77465161

Following gene: 77465159

Centisome position: 20.85

GC content: 66.56

Gene sequence:

>963_bases
ATGATCTCACTCGATCTGATCCAGCGGACGGCCGAGCGGCTGATGGAAAAGGCCGCCATCGAAATTCCCGAAGATTATCT
CGACGGGCTGAAGGCCACGGCGGCGGTCGAGGATGGCGACCTTTCCTCCTTCGTGCTGCAGGCCATGCTCGAGAATTACG
AGGCGGCCAAGGAGGACCGCCGCGCGATGTGCGGCGACACGGGCTGTCCGCGCTGGTATGTGAAGATGGGCAACGAGGCG
CATATCGAGGGCGGGCCCATCGCGCTCGAGGCGGCGCTGCGCCGTGCCACGGCGCGCGCCACGCATGACATCCCCCTGCG
GCCGAACCGGGTCCATCCGCTCTGGCGGACCGACCACGACAACAATGTGGGCATCGGCGCGCCCGAAATCGAATATGGCT
TCGAGCCGGGCGGCGACTGGATCGACCTCATCACCGTGCACAAGGGCGGGCTCTTCGGCACCGATTACCGGATGCTCTTC
CCCTCGGACGGGATCCAGGGGATCCGGCGCTTCTTCCTCGACAGCCTCGTGGCCTTCGGCAAGCGCGGCCTCGCCTGCCA
GCCCGCCATCATCGGCATCGGGCTCGGCGGGTCGAAGGATGCCTGCATGGTGCTGGGCAAGCGCGCGGCCTGCCTGCGCA
CCGTGGGCAGCCGCAACTCCGATCCGCGCATCGCGGCGCTCGAGGGCGAGCTGAAGGAACTCGGCAACTCGATCGGCATG
GGCGCCATGGGCTTCGTGGGCAAGTCCATGGTGGTCGATTGCAACATCGAGGTGGGCTACTGCCACACGGGCGGGATGCA
GATGAGCGTCCATGCCTTCTGCCTCTCCTCGCGCCGCGCCGTCGCGCGCCTCTGGGGGGACGGTCGCGTCGAATACCGCA
CCGACCCCGACTGGTTCACCGATTATCAACGCCGGGAGACAGTGGAATGGACCGTTCCGCAGGACCAAAACGAATTCGCC
TGA

Upstream 100 bases:

>100_bases
AGCTGCCCGTCACGCGCGAGCCCGTGCGCTTCACCATCGTGCGGCCCGGCGAGACGATCCTGCCGGCCGATGAACCCACC
ACACTGGTAAAGGCAGCGGA

Downstream 100 bases:

>100_bases
GCACCACCCCCTCGCGGGAGGATCTGGCCCGGCTGCACATCGGCGATGTCGTGCATCTGGACGGGCTGATCTATACCGCG
CGCGAGGGCGTCTACATGCG

Product: fumarase alpha subunit

Products: NA

Alternate protein names: Fumarase [H]

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MISLDLIQRTAERLMEKAAIEIPEDYLDGLKATAAVEDGDLSSFVLQAMLENYEAAKEDRRAMCGDTGCPRWYVKMGNEA
HIEGGPIALEAALRRATARATHDIPLRPNRVHPLWRTDHDNNVGIGAPEIEYGFEPGGDWIDLITVHKGGLFGTDYRMLF
PSDGIQGIRRFFLDSLVAFGKRGLACQPAIIGIGLGGSKDACMVLGKRAACLRTVGSRNSDPRIAALEGELKELGNSIGM
GAMGFVGKSMVVDCNIEVGYCHTGGMQMSVHAFCLSSRRAVARLWGDGRVEYRTDPDWFTDYQRRETVEWTVPQDQNEFA

Sequences:

>Translated_320_residues
MISLDLIQRTAERLMEKAAIEIPEDYLDGLKATAAVEDGDLSSFVLQAMLENYEAAKEDRRAMCGDTGCPRWYVKMGNEA
HIEGGPIALEAALRRATARATHDIPLRPNRVHPLWRTDHDNNVGIGAPEIEYGFEPGGDWIDLITVHKGGLFGTDYRMLF
PSDGIQGIRRFFLDSLVAFGKRGLACQPAIIGIGLGGSKDACMVLGKRAACLRTVGSRNSDPRIAALEGELKELGNSIGM
GAMGFVGKSMVVDCNIEVGYCHTGGMQMSVHAFCLSSRRAVARLWGDGRVEYRTDPDWFTDYQRRETVEWTVPQDQNEFA
>Mature_320_residues
MISLDLIQRTAERLMEKAAIEIPEDYLDGLKATAAVEDGDLSSFVLQAMLENYEAAKEDRRAMCGDTGCPRWYVKMGNEA
HIEGGPIALEAALRRATARATHDIPLRPNRVHPLWRTDHDNNVGIGAPEIEYGFEPGGDWIDLITVHKGGLFGTDYRMLF
PSDGIQGIRRFFLDSLVAFGKRGLACQPAIIGIGLGGSKDACMVLGKRAACLRTVGSRNSDPRIAALEGELKELGNSIGM
GAMGFVGKSMVVDCNIEVGYCHTGGMQMSVHAFCLSSRRAVARLWGDGRVEYRTDPDWFTDYQRRETVEWTVPQDQNEFA

Specific function: Unknown

COG id: COG1951

COG function: function code C; Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789442, Length=296, Percent_Identity=28.3783783783784, Blast_Score=118, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004646 [H]

Pfam domain/function: PF05681 Fumerase [H]

EC number: =4.2.1.2 [H]

Molecular weight: Translated: 35246; Mature: 35246

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLDLIQRTAERLMEKAAIEIPEDYLDGLKATAAVEDGDLSSFVLQAMLENYEAAKEDR
CCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHH
RAMCGDTGCPRWYVKMGNEAHIEGGPIALEAALRRATARATHDIPLRPNRVHPLWRTDHD
HHHCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NNVGIGAPEIEYGFEPGGDWIDLITVHKGGLFGTDYRMLFPSDGIQGIRRFFLDSLVAFG
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC
KRGLACQPAIIGIGLGGSKDACMVLGKRAACLRTVGSRNSDPRIAALEGELKELGNSIGM
CCCCEECCEEEEEECCCCCCHHHHHCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCC
GAMGFVGKSMVVDCNIEVGYCHTGGMQMSVHAFCLSSRRAVARLWGDGRVEYRTDPDWFT
CHHHHCCCCEEEEEEEEEEEEECCCCEEEHHHHHHHCCHHHHHHCCCCEEEECCCCCHHH
DYQRRETVEWTVPQDQNEFA
CHHHCCEEEEECCCCCCCCC
>Mature Secondary Structure
MISLDLIQRTAERLMEKAAIEIPEDYLDGLKATAAVEDGDLSSFVLQAMLENYEAAKEDR
CCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHH
RAMCGDTGCPRWYVKMGNEAHIEGGPIALEAALRRATARATHDIPLRPNRVHPLWRTDHD
HHHCCCCCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
NNVGIGAPEIEYGFEPGGDWIDLITVHKGGLFGTDYRMLFPSDGIQGIRRFFLDSLVAFG
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHC
KRGLACQPAIIGIGLGGSKDACMVLGKRAACLRTVGSRNSDPRIAALEGELKELGNSIGM
CCCCEECCEEEEEECCCCCCHHHHHCCHHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCC
GAMGFVGKSMVVDCNIEVGYCHTGGMQMSVHAFCLSSRRAVARLWGDGRVEYRTDPDWFT
CHHHHCCCCEEEEEEEEEEEEECCCCEEEHHHHHHHCCHHHHHHCCCCEEEECCCCCHHH
DYQRRETVEWTVPQDQNEFA
CHHHCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]